Wall clock time and date at job start Fri Apr 10 2020 18:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46895 * 110.99867 * 2 1 4 4 C 1.46902 * 110.99659 * 123.95367 * 2 1 3 5 5 H 1.09002 * 109.46826 * 194.58403 * 4 2 1 6 6 C 1.53001 * 109.47390 * 314.58096 * 4 2 1 7 7 N 1.46497 * 109.47023 * 295.00496 * 6 4 2 8 8 C 1.34952 * 126.03886 * 124.99956 * 7 6 4 9 9 C 1.35316 * 107.74363 * 179.76928 * 8 7 6 10 10 C 1.39861 * 107.92468 * 0.22428 * 9 8 7 11 11 N 1.30839 * 108.20181 * 0.02562 * 10 9 8 12 12 C 1.50704 * 109.47179 * 74.58276 * 4 2 1 13 13 O 1.21281 * 119.99657 * 342.40425 * 12 4 2 14 14 N 1.34773 * 119.99689 * 162.40621 * 12 4 2 15 15 C 1.46966 * 120.59581 * 359.71612 * 14 12 4 16 16 C 1.53809 * 108.39694 * 124.76150 * 15 14 12 17 17 N 1.46974 * 108.57989 * 49.63597 * 16 15 14 18 18 C 1.36936 * 120.58852 * 124.62658 * 17 16 15 19 19 H 1.08007 * 119.99376 * 217.04092 * 18 17 16 20 20 C 1.38809 * 120.00478 * 37.04222 * 18 17 16 21 21 N 1.31614 * 119.99826 * 12.23725 * 20 18 17 22 22 Si 1.86802 * 119.99820 * 192.23840 * 20 18 17 23 23 H 1.48497 * 109.47258 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47305 * 120.00144 * 22 20 18 25 25 H 1.48504 * 109.46726 * 239.99745 * 22 20 18 26 26 C 1.46959 * 118.81286 * 304.64987 * 17 16 15 27 27 C 1.46968 * 120.59044 * 180.02562 * 14 12 4 28 28 H 1.08996 * 109.47003 * 300.00356 * 1 2 3 29 29 H 1.09003 * 109.46490 * 59.99864 * 1 2 3 30 30 H 1.08996 * 109.47242 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46904 * 175.80441 * 3 2 1 32 32 H 1.09001 * 109.47440 * 295.80222 * 3 2 1 33 33 H 1.09001 * 109.47628 * 55.80506 * 3 2 1 34 34 H 1.08997 * 109.47520 * 175.00315 * 6 4 2 35 35 H 1.09007 * 109.46900 * 55.00257 * 6 4 2 36 36 H 1.07996 * 126.12823 * 0.03109 * 8 7 6 37 37 H 1.08004 * 126.03270 * 180.20656 * 9 8 7 38 38 H 1.07999 * 125.90099 * 180.02562 * 10 9 8 39 39 H 1.09000 * 109.61338 * 244.54283 * 15 14 12 40 40 H 1.08995 * 109.60972 * 5.05930 * 15 14 12 41 41 H 1.08998 * 109.74393 * 289.84988 * 16 15 14 42 42 H 1.08995 * 109.53615 * 169.29919 * 16 15 14 43 43 H 0.97008 * 119.99667 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.60945 * 295.48095 * 26 17 16 45 45 H 1.08996 * 109.61155 * 174.97209 * 26 17 16 46 46 H 1.09000 * 109.61256 * 354.94142 * 27 14 12 47 47 H 1.08993 * 109.61108 * 115.45836 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 1 3.0542 -0.5417 1.2679 6 6 1.2330 -0.3824 2.4074 7 7 1.4972 1.0220 2.7302 8 6 0.5677 1.9834 2.9115 9 6 1.2168 3.1359 3.1971 10 6 2.5900 2.8708 3.1851 11 7 2.7594 1.6048 2.9018 12 6 1.8228 -2.2397 0.8739 13 8 1.0465 -2.6163 0.0216 14 7 2.5311 -3.1390 1.5853 15 6 3.4798 -2.6968 2.6168 16 6 3.1100 -3.3831 3.9427 17 7 2.9518 -4.8234 3.6964 18 6 3.6722 -5.7370 4.4185 19 1 4.0422 -6.6322 3.9407 20 6 3.9268 -5.5128 5.7645 21 7 3.2846 -4.5596 6.4059 22 14 5.1810 -6.5639 6.6655 23 1 5.7589 -7.5587 5.7268 24 1 6.2632 -5.6969 7.1969 25 1 4.5172 -7.2719 7.7896 26 6 2.0073 -5.2653 2.6609 27 6 2.3734 -4.5792 1.3385 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.0826 1.3433 0.0752 32 1 1.7081 1.8709 -0.9252 33 1 1.5865 1.9176 0.8500 34 1 1.5618 -1.0131 3.2333 35 1 0.1642 -0.5232 2.2459 36 1 -0.5025 1.8551 2.8451 37 1 0.7558 4.0916 3.3985 38 1 3.3750 3.5874 3.3765 39 1 4.4925 -2.9771 2.3269 40 1 3.4161 -1.6150 2.7329 41 1 2.1743 -2.9719 4.3217 42 1 3.9048 -3.2217 4.6708 43 1 3.4628 -4.4027 7.3464 44 1 0.9931 -4.9881 2.9486 45 1 2.0739 -6.3468 2.5426 46 1 1.5787 -4.7408 0.6102 47 1 3.3092 -4.9901 0.9598 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948751080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:45 Heat of formation + Delta-G solvation = 110.499645 kcal Electronic energy + Delta-G solvation = -29077.345625 eV Core-core repulsion = 25299.346980 eV Total energy + Delta-G solvation = -3777.998645 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.62141 -40.00976 -37.61277 -36.46419 -34.00217 -33.06548 -31.54577 -30.52235 -30.17413 -29.15805 -27.70072 -26.88800 -25.21744 -23.78026 -23.06932 -22.11476 -21.20084 -20.82310 -20.11002 -18.54567 -17.59411 -17.12409 -16.67452 -16.14940 -15.57084 -15.22388 -14.74709 -14.64494 -14.32903 -14.25588 -13.93633 -13.74222 -13.72067 -13.50359 -13.35240 -13.00808 -12.86447 -12.66855 -12.49713 -12.01062 -11.84092 -11.68588 -11.62225 -11.47026 -11.33650 -10.89770 -10.80654 -10.70835 -10.51962 -10.31814 -10.15391 -9.86681 -9.64568 -9.39726 -8.80577 -8.64006 -8.31739 -8.18382 -6.65510 -5.91755 -3.46046 1.78471 2.27866 2.76132 2.87034 3.20737 3.29680 3.38298 3.40276 3.97118 4.28569 4.39155 4.62953 4.66839 4.76532 4.89195 5.11270 5.18312 5.25465 5.26067 5.29807 5.35827 5.45150 5.57261 5.60268 5.65986 5.74975 5.80249 5.86985 5.89256 5.90325 6.00893 6.07603 6.15393 6.26332 6.38729 6.53713 6.71234 6.80243 6.83292 6.89487 6.94704 7.11257 7.31569 7.60715 7.70335 7.82280 8.36618 8.47710 9.07416 9.66924 10.28990 11.15647 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.015386 B = 0.004054 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.412416 B = 6904.620414 C = 8214.529605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.517 5.517 3 C 0.019 3.981 4 C 0.059 3.941 5 H 0.117 0.883 6 C 0.101 3.899 7 N -0.363 5.363 8 C 0.052 3.948 9 C -0.274 4.274 10 C 0.043 3.957 11 N -0.286 5.286 12 C 0.521 3.479 13 O -0.537 6.537 14 N -0.593 5.593 15 C 0.073 3.927 16 C 0.166 3.834 17 N -0.588 5.588 18 C -0.263 4.263 19 H 0.064 0.936 20 C 0.013 3.987 21 N -0.899 5.899 22 Si 0.903 3.097 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.288 1.288 26 C 0.132 3.868 27 C 0.096 3.904 28 H 0.019 0.981 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.169 0.831 37 H 0.145 0.855 38 H 0.182 0.818 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.023 0.977 42 H 0.089 0.911 43 H 0.255 0.745 44 H 0.023 0.977 45 H 0.068 0.932 46 H 0.083 0.917 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.534 14.227 -8.270 17.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.240 5.240 3 C -0.129 4.129 4 C -0.054 4.054 5 H 0.135 0.865 6 C -0.023 4.023 7 N -0.145 5.145 8 C -0.094 4.094 9 C -0.304 4.304 10 C -0.143 4.143 11 N -0.107 5.107 12 C 0.307 3.693 13 O -0.415 6.415 14 N -0.326 5.326 15 C -0.051 4.051 16 C 0.039 3.961 17 N -0.311 5.311 18 C -0.393 4.393 19 H 0.082 0.918 20 C -0.187 4.187 21 N -0.542 5.542 22 Si 0.733 3.267 23 H -0.200 1.200 24 H -0.214 1.214 25 H -0.215 1.215 26 C 0.005 3.995 27 C -0.028 4.028 28 H 0.038 0.962 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.186 0.814 37 H 0.163 0.837 38 H 0.199 0.801 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.041 0.959 42 H 0.107 0.893 43 H 0.065 0.935 44 H 0.041 0.959 45 H 0.086 0.914 46 H 0.101 0.899 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.957 12.720 -9.186 16.182 hybrid contribution -0.204 0.689 1.622 1.774 sum -4.161 13.410 -7.564 15.948 Atomic orbital electron populations 1.22635 0.86922 1.03864 0.99843 1.61842 1.08647 1.13581 1.39945 1.22634 1.00649 0.88436 1.01193 1.21971 1.01866 0.92910 0.88634 0.86541 1.22481 1.02451 0.78143 0.99206 1.48691 1.04163 1.08221 1.53444 1.22498 0.96270 0.89060 1.01531 1.21459 0.93589 0.99263 1.16059 1.23871 0.96948 0.93648 0.99847 1.77402 1.01381 1.09351 1.22611 1.19971 0.80970 0.86860 0.81514 1.90605 1.37237 1.80332 1.33281 1.48070 1.41145 1.06822 1.36552 1.22900 0.92502 0.98755 0.90943 1.21123 1.00051 0.83748 0.91202 1.43866 1.45124 1.01278 1.40848 1.19159 1.27233 1.02893 0.89995 0.91801 1.25306 0.98902 0.98210 0.96254 1.69987 1.41261 1.33557 1.09364 0.86221 0.80934 0.79943 0.79646 1.20025 1.21394 1.21517 1.21336 0.92798 0.97497 0.87835 1.22256 1.01611 0.79156 0.99740 0.96241 0.91411 0.89060 0.91517 0.91760 0.94054 0.87798 0.87571 0.81389 0.83707 0.80135 0.91462 0.90928 0.95893 0.89290 0.93464 0.95941 0.91405 0.89898 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 8.31 60.07 0.50 0.68 16 2 N -0.52 -7.04 4.70 -244.57 -1.15 -8.19 16 3 C 0.02 0.23 8.65 60.06 0.52 0.75 16 4 C 0.06 0.84 1.52 -68.86 -0.10 0.74 16 5 H 0.12 1.73 6.45 -51.93 -0.33 1.39 16 6 C 0.10 1.31 4.96 -4.04 -0.02 1.29 16 7 N -0.36 -4.47 2.13 -61.37 -0.13 -4.60 16 8 C 0.05 0.54 9.20 -17.22 -0.16 0.38 16 9 C -0.27 -2.65 10.60 -40.02 -0.42 -3.07 16 10 C 0.04 0.46 11.75 -17.37 -0.20 0.26 16 11 N -0.29 -3.78 11.36 30.62 0.35 -3.43 16 12 C 0.52 8.81 6.88 -10.98 -0.08 8.74 16 13 O -0.54 -10.25 13.83 5.56 0.08 -10.17 16 14 N -0.59 -10.40 2.94 -172.19 -0.51 -10.91 16 15 C 0.07 1.29 5.83 -3.37 -0.02 1.27 16 16 C 0.17 3.63 5.46 -3.36 -0.02 3.62 16 17 N -0.59 -13.96 2.92 -171.74 -0.50 -14.47 16 18 C -0.26 -6.89 9.50 -15.06 -0.14 -7.03 16 19 H 0.06 1.66 7.86 -52.48 -0.41 1.24 16 20 C 0.01 0.36 4.98 -17.43 -0.09 0.27 16 21 N -0.90 -25.05 11.56 55.49 0.64 -24.40 16 22 Si 0.90 20.87 29.57 -169.99 -5.03 15.84 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 26 C 0.13 2.69 6.67 -3.58 -0.02 2.67 16 27 C 0.10 1.72 6.59 -3.57 -0.02 1.70 16 28 H 0.02 0.21 5.43 -51.93 -0.28 -0.08 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.29 6.05 -51.93 -0.31 0.97 16 31 H 0.07 0.84 7.88 -51.92 -0.41 0.43 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.04 0.49 3.87 -51.93 -0.20 0.29 16 34 H 0.10 1.53 6.45 -51.93 -0.33 1.19 16 35 H 0.11 1.27 6.02 -51.93 -0.31 0.96 16 36 H 0.17 1.28 8.03 -52.49 -0.42 0.86 16 37 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 38 H 0.18 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.07 1.15 4.77 -51.93 -0.25 0.90 16 41 H 0.02 0.53 7.85 -51.93 -0.41 0.13 16 42 H 0.09 2.18 6.52 -51.93 -0.34 1.84 16 43 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 46 H 0.08 1.44 6.99 -51.93 -0.36 1.08 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -30.67 358.47 -8.02 -38.68 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -6.89 Total: 3.98 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: -0.28 Total: 12.25 kcal Atomic # 7 Polarization: -64.70 SS G_CDS: -1.30 Total: -65.99 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.67 -8.02 -38.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948751080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.184 kcal (2) G-P(sol) polarization free energy of solvation -30.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds