Wall clock time and date at job start Fri Apr 10 2020 18:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46895 * 110.99867 * 2 1 4 4 C 1.46902 * 110.99659 * 123.95367 * 2 1 3 5 5 H 1.09002 * 109.46826 * 194.58403 * 4 2 1 6 6 C 1.53001 * 109.47390 * 314.58096 * 4 2 1 7 7 N 1.46497 * 109.47023 * 295.00496 * 6 4 2 8 8 C 1.34952 * 126.03886 * 124.99956 * 7 6 4 9 9 C 1.35316 * 107.74363 * 179.76928 * 8 7 6 10 10 C 1.39861 * 107.92468 * 0.22428 * 9 8 7 11 11 N 1.30839 * 108.20181 * 0.02562 * 10 9 8 12 12 C 1.50704 * 109.47179 * 74.58276 * 4 2 1 13 13 O 1.21281 * 119.99657 * 342.40425 * 12 4 2 14 14 N 1.34773 * 119.99689 * 162.40621 * 12 4 2 15 15 C 1.46966 * 120.59581 * 359.71612 * 14 12 4 16 16 C 1.53809 * 108.39694 * 124.76150 * 15 14 12 17 17 N 1.46974 * 108.57989 * 49.63597 * 16 15 14 18 18 C 1.36936 * 120.58852 * 124.62658 * 17 16 15 19 19 H 1.08007 * 119.99376 * 217.04092 * 18 17 16 20 20 C 1.38809 * 120.00478 * 37.04222 * 18 17 16 21 21 N 1.31614 * 119.99826 * 12.23725 * 20 18 17 22 22 Si 1.86802 * 119.99820 * 192.23840 * 20 18 17 23 23 H 1.48497 * 109.47258 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47305 * 120.00144 * 22 20 18 25 25 H 1.48504 * 109.46726 * 239.99745 * 22 20 18 26 26 C 1.46959 * 118.81286 * 304.64987 * 17 16 15 27 27 C 1.46968 * 120.59044 * 180.02562 * 14 12 4 28 28 H 1.08996 * 109.47003 * 300.00356 * 1 2 3 29 29 H 1.09003 * 109.46490 * 59.99864 * 1 2 3 30 30 H 1.08996 * 109.47242 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46904 * 175.80441 * 3 2 1 32 32 H 1.09001 * 109.47440 * 295.80222 * 3 2 1 33 33 H 1.09001 * 109.47628 * 55.80506 * 3 2 1 34 34 H 1.08997 * 109.47520 * 175.00315 * 6 4 2 35 35 H 1.09007 * 109.46900 * 55.00257 * 6 4 2 36 36 H 1.07996 * 126.12823 * 0.03109 * 8 7 6 37 37 H 1.08004 * 126.03270 * 180.20656 * 9 8 7 38 38 H 1.07999 * 125.90099 * 180.02562 * 10 9 8 39 39 H 1.09000 * 109.61338 * 244.54283 * 15 14 12 40 40 H 1.08995 * 109.60972 * 5.05930 * 15 14 12 41 41 H 1.08998 * 109.74393 * 289.84988 * 16 15 14 42 42 H 1.08995 * 109.53615 * 169.29919 * 16 15 14 43 43 H 0.97008 * 119.99667 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.60945 * 295.48095 * 26 17 16 45 45 H 1.08996 * 109.61155 * 174.97209 * 26 17 16 46 46 H 1.09000 * 109.61256 * 354.94142 * 27 14 12 47 47 H 1.08993 * 109.61108 * 115.45836 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 1 3.0542 -0.5417 1.2679 6 6 1.2330 -0.3824 2.4074 7 7 1.4972 1.0220 2.7302 8 6 0.5677 1.9834 2.9115 9 6 1.2168 3.1359 3.1971 10 6 2.5900 2.8708 3.1851 11 7 2.7594 1.6048 2.9018 12 6 1.8228 -2.2397 0.8739 13 8 1.0465 -2.6163 0.0216 14 7 2.5311 -3.1390 1.5853 15 6 3.4798 -2.6968 2.6168 16 6 3.1100 -3.3831 3.9427 17 7 2.9518 -4.8234 3.6964 18 6 3.6722 -5.7370 4.4185 19 1 4.0422 -6.6322 3.9407 20 6 3.9268 -5.5128 5.7645 21 7 3.2846 -4.5596 6.4059 22 14 5.1810 -6.5639 6.6655 23 1 5.7589 -7.5587 5.7268 24 1 6.2632 -5.6969 7.1969 25 1 4.5172 -7.2719 7.7896 26 6 2.0073 -5.2653 2.6609 27 6 2.3734 -4.5792 1.3385 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.0826 1.3433 0.0752 32 1 1.7081 1.8709 -0.9252 33 1 1.5865 1.9176 0.8500 34 1 1.5618 -1.0131 3.2333 35 1 0.1642 -0.5232 2.2459 36 1 -0.5025 1.8551 2.8451 37 1 0.7558 4.0916 3.3985 38 1 3.3750 3.5874 3.3765 39 1 4.4925 -2.9771 2.3269 40 1 3.4161 -1.6150 2.7329 41 1 2.1743 -2.9719 4.3217 42 1 3.9048 -3.2217 4.6708 43 1 3.4628 -4.4027 7.3464 44 1 0.9931 -4.9881 2.9486 45 1 2.0739 -6.3468 2.5426 46 1 1.5787 -4.7408 0.6102 47 1 3.3092 -4.9901 0.9598 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948751080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:44 Heat of formation + Delta-G solvation = 90.441312 kcal Electronic energy + Delta-G solvation = -29078.215420 eV Core-core repulsion = 25299.346980 eV Total energy + Delta-G solvation = -3778.868440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.52644 -41.29244 -38.95815 -37.87389 -35.68566 -34.11050 -33.23742 -32.07093 -31.18527 -30.25900 -28.78303 -28.44049 -26.31111 -25.45061 -24.61399 -23.38715 -22.11139 -21.96707 -21.32193 -20.05331 -18.82318 -18.34710 -17.94137 -17.59158 -16.87945 -16.64841 -16.31324 -15.91425 -15.55670 -15.52518 -15.25577 -15.11974 -15.05485 -14.75413 -14.68261 -14.20773 -13.96848 -13.80621 -13.53689 -13.35146 -13.22495 -12.94246 -12.81960 -12.72489 -12.64796 -12.57016 -12.52311 -12.22212 -12.06703 -11.96831 -11.64893 -11.54862 -10.80784 -10.61811 -10.52447 -9.85735 -9.63331 -9.19140 -8.58028 -7.91656 -5.50050 0.95225 1.29466 1.45785 1.48760 1.58463 1.61134 1.88992 2.00396 2.48145 2.87713 3.23954 3.24755 3.46381 3.55640 3.61081 3.95305 4.02794 4.10399 4.17753 4.20125 4.24994 4.28432 4.35930 4.43935 4.51107 4.58870 4.62527 4.67040 4.69801 4.74391 4.80618 4.89633 4.95132 5.03191 5.05669 5.18084 5.18200 5.44590 5.54244 5.63590 5.74858 5.79454 5.95945 6.04763 6.37985 6.40206 6.78936 7.08441 7.10386 7.74031 8.32453 9.12751 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.015386 B = 0.004054 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.412416 B = 6904.620414 C = 8214.529605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.531 5.531 3 C 0.027 3.973 4 C 0.072 3.928 5 H 0.111 0.889 6 C 0.111 3.889 7 N -0.375 5.375 8 C 0.046 3.954 9 C -0.271 4.271 10 C 0.042 3.958 11 N -0.326 5.326 12 C 0.523 3.477 13 O -0.557 6.557 14 N -0.598 5.598 15 C 0.095 3.905 16 C 0.176 3.824 17 N -0.606 5.606 18 C -0.271 4.271 19 H 0.065 0.935 20 C -0.035 4.035 21 N -0.931 5.931 22 Si 0.966 3.034 23 H -0.265 1.265 24 H -0.288 1.288 25 H -0.292 1.292 26 C 0.134 3.866 27 C 0.107 3.893 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.117 0.883 36 H 0.194 0.806 37 H 0.170 0.830 38 H 0.205 0.795 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.003 0.997 42 H 0.060 0.940 43 H 0.252 0.748 44 H 0.012 0.988 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.671 15.638 -9.097 18.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.255 5.255 3 C -0.121 4.121 4 C -0.042 4.042 5 H 0.128 0.872 6 C -0.014 4.014 7 N -0.157 5.157 8 C -0.099 4.099 9 C -0.301 4.301 10 C -0.144 4.144 11 N -0.147 5.147 12 C 0.310 3.690 13 O -0.435 6.435 14 N -0.330 5.330 15 C -0.029 4.029 16 C 0.049 3.951 17 N -0.329 5.329 18 C -0.401 4.401 19 H 0.083 0.917 20 C -0.232 4.232 21 N -0.575 5.575 22 Si 0.794 3.206 23 H -0.189 1.189 24 H -0.215 1.215 25 H -0.219 1.219 26 C 0.008 3.992 27 C -0.017 4.017 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.135 0.865 36 H 0.211 0.789 37 H 0.188 0.812 38 H 0.222 0.778 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.021 0.979 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.030 0.970 45 H 0.091 0.909 46 H 0.109 0.891 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.100 14.147 -10.042 17.826 hybrid contribution -0.230 0.311 1.853 1.893 sum -4.330 14.457 -8.189 17.170 Atomic orbital electron populations 1.22588 0.86059 1.02933 1.01324 1.61855 1.09588 1.14480 1.39541 1.22578 1.00022 0.87527 1.01946 1.21755 1.01763 0.90983 0.89654 0.87156 1.22227 1.02674 0.78848 0.97607 1.48593 1.04543 1.07950 1.54619 1.23041 0.97277 0.88720 1.00820 1.21805 0.93119 1.00091 1.15039 1.24410 0.98320 0.93253 0.98435 1.77375 1.02247 1.10704 1.24421 1.20421 0.79972 0.87876 0.80731 1.90598 1.37862 1.80961 1.34081 1.48099 1.41364 1.06901 1.36672 1.22566 0.92424 0.99308 0.88631 1.20894 0.98031 0.83458 0.92723 1.44114 1.45821 1.01678 1.41317 1.19452 1.27081 1.03202 0.90391 0.91717 1.25996 1.00701 0.99485 0.97014 1.70126 1.42827 1.35198 1.09319 0.85243 0.78609 0.78491 0.78288 1.18946 1.21494 1.21918 1.21385 0.91563 0.98173 0.88119 1.22076 1.02134 0.79332 0.98176 0.94547 0.90069 0.91149 0.92408 0.90538 0.93646 0.89992 0.86542 0.78933 0.81209 0.77803 0.91195 0.89017 0.97851 0.92191 0.93898 0.97024 0.90852 0.89107 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 8.31 127.69 1.06 1.48 16 2 N -0.53 -13.67 4.70 -927.69 -4.36 -18.03 16 3 C 0.03 0.59 8.65 127.69 1.10 1.70 16 4 C 0.07 1.98 1.52 44.17 0.07 2.04 16 5 H 0.11 3.20 6.45 -2.39 -0.02 3.18 16 6 C 0.11 2.81 4.96 86.38 0.43 3.24 16 7 N -0.37 -8.70 2.13 -348.06 -0.74 -9.44 16 8 C 0.05 0.83 9.20 83.54 0.77 1.60 16 9 C -0.27 -4.48 10.60 21.99 0.23 -4.24 16 10 C 0.04 0.81 11.75 85.23 1.00 1.81 16 11 N -0.33 -8.22 11.36 -57.03 -0.65 -8.87 16 12 C 0.52 17.37 6.88 87.66 0.60 17.97 16 13 O -0.56 -20.84 13.83 -3.03 -0.04 -20.88 16 14 N -0.60 -20.75 2.94 -817.08 -2.40 -23.15 16 15 C 0.09 3.35 5.83 86.56 0.50 3.86 16 16 C 0.18 7.92 5.46 86.56 0.47 8.39 16 17 N -0.61 -29.18 2.92 -697.28 -2.03 -31.21 16 18 C -0.27 -14.31 9.50 84.03 0.80 -13.51 16 19 H 0.07 3.35 7.86 -2.91 -0.02 3.32 16 20 C -0.04 -1.88 4.98 84.86 0.42 -1.46 16 21 N -0.93 -53.07 11.56 21.65 0.25 -52.82 16 22 Si 0.97 43.26 29.57 68.60 2.03 45.28 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 26 C 0.13 5.47 6.67 86.43 0.58 6.05 16 27 C 0.11 3.76 6.59 86.43 0.57 4.33 16 28 H 0.04 0.69 5.43 -2.39 -0.01 0.67 16 29 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.07 1.91 6.05 -2.39 -0.01 1.89 16 31 H 0.06 1.37 7.88 -2.38 -0.02 1.35 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.05 0.97 3.87 -2.39 -0.01 0.96 16 34 H 0.08 2.44 6.45 -2.39 -0.02 2.43 16 35 H 0.12 2.66 6.02 -2.38 -0.01 2.64 16 36 H 0.19 2.33 8.03 -2.91 -0.02 2.31 16 37 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 38 H 0.21 2.68 8.06 -2.91 -0.02 2.65 16 39 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.09 2.91 4.77 -2.39 -0.01 2.90 16 41 H 0.00 0.17 7.85 -2.39 -0.02 0.15 16 42 H 0.06 3.05 6.52 -2.39 -0.02 3.03 16 43 H 0.25 13.93 8.31 -92.70 -0.77 13.16 16 44 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.07 2.87 7.93 -2.39 -0.02 2.85 16 46 H 0.09 3.09 6.99 -2.39 -0.02 3.07 16 47 H 0.07 2.39 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -65.97 358.47 1.64 -64.33 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.98 Total: 21.54 kcal Atomic # 6 Polarization: 24.65 SS G_CDS: 8.61 Total: 33.26 kcal Atomic # 7 Polarization: -133.60 SS G_CDS: -9.94 Total: -143.53 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.04 Total: -20.88 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -65.97 1.64 -64.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948751080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.774 kcal (2) G-P(sol) polarization free energy of solvation -65.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds