Wall clock time and date at job start Fri Apr 10 2020 18:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36598 * 126.58305 * 2 1 4 4 C 1.47521 * 125.76630 * 0.03645 * 3 2 1 5 5 O 1.21594 * 120.00480 * 359.72538 * 4 3 2 6 6 N 1.34777 * 119.99809 * 179.71533 * 4 3 2 7 7 C 1.47025 * 125.64857 * 0.03087 * 6 4 3 8 8 C 1.54317 * 107.27266 * 180.79065 * 7 6 4 9 9 C 1.55158 * 102.94173 * 22.19050 * 8 7 6 10 10 H 1.09007 * 110.99733 * 82.61322 * 9 8 7 11 11 N 1.46500 * 111.00593 * 206.42180 * 9 8 7 12 12 C 1.46503 * 119.99652 * 59.99939 * 11 9 8 13 13 C 1.36939 * 120.00385 * 240.00441 * 11 9 8 14 14 H 1.08005 * 119.99565 * 23.24548 * 13 11 9 15 15 C 1.38812 * 120.00110 * 203.24868 * 13 11 9 16 16 N 1.31621 * 119.99616 * 13.76816 * 15 13 11 17 17 Si 1.86799 * 119.99757 * 193.76830 * 15 13 11 18 18 H 1.48502 * 109.47105 * 90.00289 * 17 15 13 19 19 H 1.48503 * 109.46777 * 210.00139 * 17 15 13 20 20 H 1.48497 * 109.47388 * 329.99813 * 17 15 13 21 21 C 1.47420 * 125.65036 * 179.71468 * 6 4 3 22 22 N 1.34394 * 108.45813 * 179.77897 * 3 2 1 23 23 N 1.28765 * 109.52575 * 0.22514 * 22 3 2 24 24 N 1.34822 * 126.57761 * 180.16696 * 2 1 3 25 25 C 1.46497 * 126.59404 * 359.97438 * 24 2 1 26 26 C 1.52999 * 109.47119 * 120.24535 * 25 24 2 27 27 C 1.52999 * 109.46744 * 240.24014 * 25 24 2 28 28 H 1.08997 * 109.47512 * 90.02617 * 1 2 3 29 29 H 1.09002 * 109.46787 * 210.02956 * 1 2 3 30 30 H 1.08997 * 109.46843 * 330.02254 * 1 2 3 31 31 H 1.08998 * 109.88091 * 300.21267 * 7 6 4 32 32 H 1.09001 * 109.88016 * 61.21509 * 7 6 4 33 33 H 1.09000 * 110.72173 * 140.55634 * 8 7 6 34 34 H 1.09002 * 110.71876 * 263.64990 * 8 7 6 35 35 H 1.09002 * 109.46771 * 95.16351 * 12 11 9 36 36 H 1.08997 * 109.47427 * 215.15710 * 12 11 9 37 37 H 1.08995 * 109.47520 * 335.16257 * 12 11 9 38 38 H 0.97006 * 119.99558 * 180.02562 * 16 15 13 39 39 H 1.08994 * 110.37169 * 274.98058 * 21 6 4 40 40 H 1.09005 * 110.36497 * 37.30343 * 21 6 4 41 41 H 1.08998 * 109.47235 * 0.24176 * 25 24 2 42 42 H 1.08999 * 109.47034 * 180.02562 * 26 25 24 43 43 H 1.09008 * 109.46949 * 299.99053 * 26 25 24 44 44 H 1.08998 * 109.47836 * 59.99483 * 26 25 24 45 45 H 1.08996 * 109.47225 * 60.00196 * 27 25 24 46 46 H 1.09001 * 109.47038 * 180.02562 * 27 25 24 47 47 H 1.08998 * 109.47387 * 300.00069 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5026 0.0008 5 8 0.6860 2.7628 -0.0036 6 7 2.7818 3.4987 0.0065 7 6 4.2419 3.3271 0.0117 8 6 4.8689 4.7369 0.0376 9 6 3.7276 5.6142 0.6166 10 1 3.7068 5.5596 1.7051 11 7 3.8519 7.0024 0.1655 12 6 3.8136 7.3139 -1.2655 13 6 4.0042 8.0090 1.0815 14 1 4.4018 7.7914 2.0618 15 6 3.6474 9.3089 0.7500 16 7 2.9206 9.5384 -0.3231 17 14 4.1987 10.7321 1.8269 18 1 5.5117 11.2349 1.3488 19 1 3.1948 11.8242 1.7561 20 1 4.3277 10.2689 3.2318 21 6 2.4753 4.9407 0.0019 22 7 3.5984 0.6788 0.0049 23 7 3.6299 -0.6085 0.0032 24 7 2.3104 -1.0827 -0.0032 25 6 1.8863 -2.4849 -0.0067 26 6 2.4337 -3.1801 -1.2549 27 6 2.4245 -3.1836 1.2435 28 1 -0.3634 -0.0005 -1.0276 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5135 31 1 4.5465 2.7695 0.8974 32 1 4.5559 2.7956 -0.8867 33 1 5.7414 4.7590 0.6905 34 1 5.1341 5.0596 -0.9692 35 1 2.7979 7.5885 -1.5504 36 1 4.4868 8.1452 -1.4746 37 1 4.1272 6.4398 -1.8361 38 1 2.6716 10.4469 -0.5550 39 1 2.3177 5.2919 -1.0178 40 1 1.5965 5.1436 0.6140 41 1 0.7975 -2.5352 -0.0108 42 1 2.1177 -4.2233 -1.2578 43 1 2.0502 -2.6824 -2.1457 44 1 3.5225 -3.1299 -1.2509 45 1 2.0346 -2.6883 2.1328 46 1 2.1093 -4.2270 1.2407 47 1 3.5133 -3.1333 1.2476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972636700.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:51 Heat of formation + Delta-G solvation = 67.028648 kcal Electronic energy + Delta-G solvation = -27600.178214 eV Core-core repulsion = 23820.294525 eV Total energy + Delta-G solvation = -3779.883689 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.35313 -40.87032 -38.87141 -37.37329 -36.55363 -34.02620 -33.52106 -32.08328 -31.22116 -29.62740 -28.58483 -28.26688 -28.04574 -25.69406 -24.97702 -24.03026 -23.05867 -21.28613 -20.94207 -20.33255 -18.93389 -18.44038 -17.61253 -17.33612 -17.15540 -16.77922 -16.27122 -15.62539 -15.36421 -15.25853 -15.00483 -14.80829 -14.40444 -14.30164 -14.15723 -14.02646 -13.98142 -13.83703 -13.41094 -13.21184 -13.18903 -13.17424 -12.90130 -12.77060 -12.54725 -12.52227 -12.38975 -12.32542 -12.16266 -12.04569 -11.90847 -11.77140 -11.43296 -11.15568 -11.11379 -10.62958 -10.24749 -9.64695 -8.78707 -7.82301 -5.32797 0.10331 0.61109 1.04275 1.49211 1.49922 1.59007 1.89986 2.17091 2.52439 3.10196 3.26603 3.30132 3.50446 3.55195 3.66262 3.82059 3.94628 3.97186 4.00358 4.13102 4.21806 4.36168 4.41813 4.51766 4.58930 4.63050 4.64587 4.70454 4.73337 4.76316 4.81117 4.86467 4.94186 5.02005 5.12040 5.18234 5.19253 5.23028 5.24370 5.31228 5.43040 5.57449 5.66106 5.71215 6.32467 6.45361 6.82807 7.07248 7.14290 7.84023 8.29230 9.20359 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.032080 B = 0.002542 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.603707 B =11012.689950 C =11286.579471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.132 3.868 3 C -0.128 4.128 4 C 0.609 3.391 5 O -0.569 6.569 6 N -0.602 5.602 7 C 0.126 3.874 8 C -0.140 4.140 9 C 0.168 3.832 10 H 0.074 0.926 11 N -0.599 5.599 12 C 0.176 3.824 13 C -0.266 4.266 14 H 0.075 0.925 15 C -0.052 4.052 16 N -0.936 5.936 17 Si 0.972 3.028 18 H -0.285 1.285 19 H -0.297 1.297 20 H -0.268 1.268 21 C 0.103 3.897 22 N -0.217 5.217 23 N -0.083 5.083 24 N -0.345 5.345 25 C 0.131 3.869 26 C -0.159 4.159 27 C -0.160 4.160 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.004 0.996 36 H 0.018 0.982 37 H 0.033 0.967 38 H 0.249 0.751 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.142 0.858 42 H 0.113 0.887 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.113 0.887 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.734 -29.984 -0.076 30.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.007 4.007 3 C -0.267 4.267 4 C 0.397 3.603 5 O -0.449 6.449 6 N -0.334 5.334 7 C 0.004 3.996 8 C -0.180 4.180 9 C 0.059 3.941 10 H 0.093 0.907 11 N -0.320 5.320 12 C 0.031 3.969 13 C -0.396 4.396 14 H 0.092 0.908 15 C -0.247 4.247 16 N -0.582 5.582 17 Si 0.800 3.200 18 H -0.211 1.211 19 H -0.224 1.224 20 H -0.192 1.192 21 C -0.022 4.022 22 N -0.090 5.090 23 N -0.063 5.063 24 N -0.132 5.132 25 C 0.032 3.968 26 C -0.216 4.216 27 C -0.217 4.217 28 H 0.123 0.877 29 H 0.131 0.869 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.022 0.978 36 H 0.037 0.963 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.159 0.841 42 H 0.132 0.868 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.132 0.868 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.948 -30.190 -0.135 30.253 hybrid contribution -0.757 1.603 0.235 1.788 sum -2.705 -28.587 0.100 28.715 Atomic orbital electron populations 1.20821 0.82568 1.06117 1.05663 1.22272 0.97368 0.85790 0.95282 1.21014 0.89963 0.94637 1.21088 1.16709 0.84424 0.82834 0.76303 1.90726 1.16452 1.84010 1.53686 1.48283 1.08170 1.05928 1.71028 1.22020 0.77707 0.97172 1.02748 1.23115 0.99112 0.93096 1.02630 1.21574 0.91670 0.83621 0.97246 0.90734 1.44025 1.84006 1.01352 1.02656 1.20515 0.97994 0.95428 0.82929 1.19573 1.35328 0.87883 0.96842 0.90767 1.25846 0.98531 1.00776 0.99540 1.70248 1.39509 1.19651 1.28835 0.85197 0.77056 0.78869 0.78878 1.21143 1.22362 1.19233 1.22707 1.00117 0.78775 1.00628 1.74688 1.19312 1.04614 1.10430 1.81814 0.98080 1.02915 1.23453 1.50964 1.05136 1.08423 1.48632 1.22215 1.02444 0.73007 0.99122 1.22159 1.02051 1.02487 0.94946 1.22170 1.02125 1.02477 0.94952 0.87748 0.86881 0.89104 0.90426 0.90716 0.88952 0.90901 0.97768 0.96295 0.94900 0.94211 0.92622 0.92771 0.84086 0.86827 0.92398 0.92398 0.92369 0.86830 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.41 9.40 71.24 0.67 -0.74 16 2 C 0.13 2.92 7.02 41.72 0.29 3.21 16 3 C -0.13 -3.81 6.85 40.82 0.28 -3.53 16 4 C 0.61 21.74 7.85 86.69 0.68 22.42 16 5 O -0.57 -22.38 14.98 -4.01 -0.06 -22.44 16 6 N -0.60 -21.79 3.33 -815.58 -2.71 -24.50 16 7 C 0.13 3.95 5.52 86.73 0.48 4.43 16 8 C -0.14 -4.69 6.49 31.78 0.21 -4.48 16 9 C 0.17 6.98 3.53 46.38 0.16 7.15 16 10 H 0.07 3.14 7.96 -2.38 -0.02 3.12 16 11 N -0.60 -30.19 2.96 -695.01 -2.06 -32.25 16 12 C 0.18 8.81 7.57 127.77 0.97 9.78 16 13 C -0.27 -14.64 9.60 84.03 0.81 -13.84 16 14 H 0.07 3.94 7.87 -2.91 -0.02 3.91 16 15 C -0.05 -2.90 5.08 84.86 0.43 -2.47 16 16 N -0.94 -56.04 10.77 21.65 0.23 -55.81 16 17 Si 0.97 45.40 29.58 68.60 2.03 47.42 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 19 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 C 0.10 4.23 6.46 86.85 0.56 4.79 16 22 N -0.22 -6.46 9.77 -50.00 -0.49 -6.95 16 23 N -0.08 -2.14 13.67 37.02 0.51 -1.63 16 24 N -0.34 -6.45 3.28 -313.39 -1.03 -7.48 16 25 C 0.13 1.13 3.68 44.99 0.17 1.30 16 26 C -0.16 -1.15 9.47 71.98 0.68 -0.47 16 27 C -0.16 -1.15 9.47 71.98 0.68 -0.47 16 28 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.11 0.76 7.19 -2.39 -0.02 0.75 16 30 H 0.09 1.90 6.43 -2.39 -0.02 1.89 16 31 H 0.08 2.32 7.63 -2.39 -0.02 2.30 16 32 H 0.07 2.25 7.71 -2.39 -0.02 2.23 16 33 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.07 2.50 6.47 -2.39 -0.02 2.48 16 35 H 0.00 0.22 7.33 -2.39 -0.02 0.21 16 36 H 0.02 1.00 7.38 -2.39 -0.02 0.98 16 37 H 0.03 1.41 6.38 -2.39 -0.02 1.40 16 38 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 39 H 0.06 2.44 6.96 -2.39 -0.02 2.42 16 40 H 0.05 2.42 8.04 -2.38 -0.02 2.40 16 41 H 0.14 0.35 6.79 -2.39 -0.02 0.33 16 42 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 44 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 47 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -73.18 375.23 4.45 -68.73 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 0.97 Total: 7.84 kcal Atomic # 6 Polarization: 20.00 SS G_CDS: 7.07 Total: 27.07 kcal Atomic # 7 Polarization: -123.07 SS G_CDS: -5.55 Total: -128.62 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.06 Total: -22.44 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -73.18 4.45 -68.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972636700.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.756 kcal (2) G-P(sol) polarization free energy of solvation -73.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds