Wall clock time and date at job start Fri Apr 10 2020 18:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47154 * 2 1 4 4 N 1.46496 * 109.47048 * 179.97438 * 3 2 1 5 5 C 1.34815 * 126.59324 * 125.00712 * 4 3 2 6 6 C 1.36599 * 106.84056 * 179.97438 * 5 4 3 7 7 C 1.47524 * 125.76872 * 179.97438 * 6 5 4 8 8 O 1.21594 * 120.00283 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99652 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00063 * 179.97438 * 9 7 6 11 11 H 1.09005 * 110.63957 * 328.14482 * 10 9 7 12 12 C 1.54327 * 110.71866 * 91.47566 * 10 9 7 13 13 N 1.47024 * 107.26774 * 96.17335 * 12 10 9 14 14 C 1.36941 * 125.64618 * 179.20447 * 13 12 10 15 15 H 1.08005 * 119.99780 * 179.68989 * 14 13 12 16 16 C 1.38813 * 119.99913 * 359.69358 * 14 13 12 17 17 N 1.31616 * 119.99926 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99719 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47341 * 89.99896 * 18 16 14 20 20 H 1.48503 * 109.46756 * 209.99724 * 18 16 14 21 21 H 1.48496 * 109.46957 * 329.99498 * 18 16 14 22 22 C 1.47426 * 108.70449 * 358.94057 * 13 12 10 23 23 C 1.54912 * 104.83261 * 24.12870 * 22 13 12 24 24 C 1.53004 * 111.00325 * 81.06512 * 23 22 13 25 25 C 1.52998 * 111.00343 * 204.88065 * 23 22 13 26 26 N 1.34397 * 108.45492 * 0.23634 * 6 5 4 27 27 N 1.28764 * 109.52897 * 359.59146 * 26 6 5 28 28 H 1.08997 * 109.47486 * 60.00259 * 1 2 3 29 29 H 1.09003 * 109.47247 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47244 * 299.99354 * 1 2 3 31 31 H 1.09000 * 109.47230 * 240.00154 * 2 1 3 32 32 H 1.09003 * 109.47457 * 120.00205 * 2 1 3 33 33 H 1.09000 * 109.46926 * 59.99968 * 3 2 1 34 34 H 1.08997 * 109.46712 * 300.00214 * 3 2 1 35 35 H 1.08000 * 126.58159 * 359.97438 * 5 4 3 36 36 H 0.97005 * 120.00259 * 359.97438 * 9 7 6 37 37 H 1.08995 * 109.88184 * 336.75758 * 12 10 9 38 38 H 1.09002 * 109.88385 * 215.58765 * 12 10 9 39 39 H 0.97001 * 119.99407 * 180.02562 * 17 16 14 40 40 H 1.09002 * 110.36518 * 142.96440 * 22 13 12 41 41 H 1.08997 * 110.36787 * 265.28818 * 22 13 12 42 42 H 1.08994 * 109.46864 * 61.44984 * 24 23 22 43 43 H 1.09000 * 109.46578 * 181.45533 * 24 23 22 44 44 H 1.08996 * 109.46833 * 301.45173 * 24 23 22 45 45 H 1.08992 * 109.47271 * 58.54108 * 25 23 22 46 46 H 1.09003 * 109.47056 * 178.54990 * 25 23 22 47 47 H 1.09006 * 109.46578 * 298.54351 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.3090 2.0633 -0.8857 6 6 5.5944 1.7990 -0.5067 7 6 6.8108 2.2777 -1.1905 8 8 6.7164 2.9719 -2.1843 9 7 8.0268 1.9455 -0.7135 10 6 9.2348 2.4204 -1.3928 11 1 9.0617 2.5122 -2.4651 12 6 9.7053 3.7631 -0.7949 13 7 10.7435 3.4577 0.2003 14 6 11.4289 4.3787 0.9469 15 1 12.1727 4.0514 1.6583 16 6 11.1677 5.7329 0.7893 17 7 10.2616 6.1317 -0.0781 18 14 12.1032 6.9892 1.8071 19 1 13.3338 7.3959 1.0826 20 1 11.2456 8.1802 2.0336 21 1 12.4735 6.3901 3.1144 22 6 10.9200 1.9955 0.2660 23 6 10.4319 1.4750 -1.1090 24 6 11.5200 1.6332 -2.1730 25 6 9.9711 0.0193 -1.0121 26 7 5.5635 1.0243 0.5911 27 7 4.3404 0.7974 0.9235 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9968 2.6559 -1.7329 36 1 8.1022 1.3920 0.0795 37 1 8.8679 4.2684 -0.3140 38 1 10.1198 4.3941 -1.5812 39 1 10.0794 7.0780 -0.1884 40 1 11.9707 1.7466 0.4146 41 1 10.3127 1.5758 1.0679 42 1 12.3928 1.0448 -1.8902 43 1 11.1420 1.2839 -3.1338 44 1 11.8001 2.6835 -2.2527 45 1 9.1677 -0.0596 -0.2798 46 1 9.6096 -0.3129 -1.9853 47 1 10.8079 -0.6068 -0.7023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977412255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:26 Heat of formation + Delta-G solvation = 79.585996 kcal Electronic energy + Delta-G solvation = -27624.588703 eV Core-core repulsion = 23845.249541 eV Total energy + Delta-G solvation = -3779.339162 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.20146 -39.53356 -37.73613 -36.25788 -33.81872 -33.09921 -32.65391 -30.87549 -30.60305 -28.14350 -27.30564 -26.64127 -25.54936 -24.00545 -23.17437 -22.57068 -21.71232 -20.40504 -19.78663 -18.79829 -17.83988 -16.63525 -16.38486 -16.16279 -15.77755 -15.40888 -14.75292 -14.68964 -14.24488 -14.06114 -13.85693 -13.77799 -13.58719 -13.22625 -13.03550 -12.56682 -12.39579 -12.25479 -12.01132 -11.92476 -11.90827 -11.59377 -11.47278 -11.31452 -11.16933 -10.99263 -10.92185 -10.73025 -10.42824 -10.31998 -10.18188 -9.93897 -9.80644 -9.69114 -9.56500 -9.26920 -8.56988 -8.34884 -6.74852 -5.62455 -2.96499 1.11446 1.84646 1.91275 3.44912 3.49454 3.51384 3.51951 3.64792 4.00574 4.23285 4.28862 4.55711 4.56775 4.75007 4.78215 4.90009 5.00811 5.05592 5.08881 5.27056 5.37351 5.40954 5.46541 5.53945 5.60920 5.68663 5.70902 5.84658 5.90833 6.01313 6.12680 6.23845 6.26681 6.28816 6.35910 6.47511 6.66171 6.71216 6.75687 6.82036 7.03617 7.61895 7.70030 7.83875 7.91536 8.09406 8.32950 8.62176 9.29211 9.89990 10.55891 11.48407 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.015274 B = 0.003118 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.745971 B = 8977.851004 C = 9997.398547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.121 3.879 4 N -0.364 5.364 5 C 0.089 3.911 6 C -0.091 4.091 7 C 0.601 3.399 8 O -0.542 6.542 9 N -0.691 5.691 10 C 0.123 3.877 11 H 0.091 0.909 12 C 0.176 3.824 13 N -0.603 5.603 14 C -0.226 4.226 15 H 0.077 0.923 16 C -0.009 4.009 17 N -0.919 5.919 18 Si 0.910 3.090 19 H -0.289 1.289 20 H -0.292 1.292 21 H -0.282 1.282 22 C 0.143 3.857 23 C -0.089 4.089 24 C -0.125 4.125 25 C -0.132 4.132 26 N -0.204 5.204 27 N -0.068 5.068 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.204 0.796 36 H 0.404 0.596 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.252 0.748 40 H 0.041 0.959 41 H 0.017 0.983 42 H 0.053 0.947 43 H 0.047 0.953 44 H 0.068 0.932 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.862 -13.484 -3.432 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C 0.000 4.000 4 N -0.150 5.150 5 C -0.068 4.068 6 C -0.231 4.231 7 C 0.384 3.616 8 O -0.419 6.419 9 N -0.341 5.341 10 C 0.018 3.982 11 H 0.109 0.891 12 C 0.050 3.950 13 N -0.329 5.329 14 C -0.354 4.354 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.567 5.567 18 Si 0.741 3.259 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C 0.016 3.984 23 C -0.091 4.091 24 C -0.182 4.182 25 C -0.190 4.190 26 N -0.077 5.077 27 N -0.049 5.049 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.220 0.780 36 H 0.240 0.760 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.035 0.965 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.887 -13.608 -2.859 21.876 hybrid contribution 0.203 1.215 0.140 1.240 sum -16.684 -12.393 -2.719 20.960 Atomic orbital electron populations 1.21703 0.93930 1.02797 1.02347 1.21829 0.96864 0.94687 1.04219 1.22123 0.72773 0.99943 1.05123 1.50521 1.08669 1.35625 1.20145 1.23377 0.90211 0.97094 0.96077 1.21643 0.94856 1.07655 0.98945 1.16691 0.81789 0.79847 0.83276 1.90797 1.86581 1.38476 1.26014 1.45816 1.04874 1.52444 1.30983 1.22545 0.82218 0.96358 0.97056 0.89066 1.21527 0.91814 0.89538 0.92109 1.44438 1.43678 0.99395 1.45418 1.19027 1.15098 0.86169 1.15143 0.90493 1.24800 0.99254 0.96915 0.99530 1.69964 1.34977 1.14274 1.37469 0.86142 0.78897 0.81285 0.79574 1.21676 1.21814 1.20801 1.21651 0.97951 0.86219 0.92558 1.22011 0.95230 0.93925 0.97902 1.21590 0.97025 1.03032 0.96582 1.21689 1.00712 0.95286 1.01313 1.74644 1.12730 1.10241 1.10106 1.81934 0.93464 1.17643 1.11830 0.92236 0.91696 0.92078 0.91053 0.90021 0.88412 0.87754 0.77951 0.75989 0.93403 0.92693 0.93789 0.94059 0.96516 0.92837 0.93402 0.91265 0.92758 0.92942 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 9.91 37.16 0.37 -0.18 16 2 C -0.14 -0.76 6.14 -26.73 -0.16 -0.93 16 3 C 0.12 0.72 6.54 -4.04 -0.03 0.70 16 4 N -0.36 -3.89 3.69 -61.06 -0.23 -4.12 16 5 C 0.09 1.06 11.27 -16.83 -0.19 0.87 16 6 C -0.09 -1.43 6.99 -83.55 -0.58 -2.02 16 7 C 0.60 11.06 7.82 -12.48 -0.10 10.96 16 8 O -0.54 -11.25 16.51 5.28 0.09 -11.16 16 9 N -0.69 -12.68 4.41 -53.07 -0.23 -12.92 16 10 C 0.12 2.43 2.59 -66.10 -0.17 2.26 16 11 H 0.09 1.83 7.45 -51.93 -0.39 1.44 16 12 C 0.18 4.41 4.73 -3.06 -0.01 4.39 16 13 N -0.60 -15.43 3.38 -170.07 -0.58 -16.01 16 14 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 15 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 16 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 17 N -0.92 -27.77 10.31 55.49 0.57 -27.19 16 18 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 C 0.14 2.94 6.12 -2.53 -0.02 2.92 16 23 C -0.09 -1.55 0.83 -152.36 -0.13 -1.67 16 24 C -0.12 -2.04 8.61 37.16 0.32 -1.72 16 25 C -0.13 -1.87 8.35 37.16 0.31 -1.56 16 26 N -0.20 -3.25 12.04 32.85 0.40 -2.85 16 27 N -0.07 -0.96 13.65 60.35 0.82 -0.14 16 28 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 0.35 8.08 -51.93 -0.42 -0.07 16 35 H 0.20 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.40 7.05 6.74 -40.82 -0.28 6.77 16 37 H 0.05 1.38 7.41 -51.93 -0.38 1.00 16 38 H 0.06 1.54 7.38 -51.93 -0.38 1.15 16 39 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.04 0.83 8.05 -51.93 -0.42 0.41 16 41 H 0.02 0.35 8.04 -51.93 -0.42 -0.07 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 1.32 7.81 -51.93 -0.41 0.91 16 45 H 0.05 0.76 6.27 -51.93 -0.33 0.43 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 383.38 15.07 5.78 5.78 Total: -1.00 -34.43 383.38 -6.66 -41.09 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.61 Total: 2.75 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -0.64 Total: 7.17 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: 0.76 Total: -63.23 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.43 -6.66 -41.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977412255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.678 kcal (2) G-P(sol) polarization free energy of solvation -34.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds