Wall clock time and date at job start Fri Apr 10 2020 18:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47154 * 2 1 4 4 N 1.46496 * 109.47048 * 179.97438 * 3 2 1 5 5 C 1.34815 * 126.59324 * 125.00712 * 4 3 2 6 6 C 1.36599 * 106.84056 * 179.97438 * 5 4 3 7 7 C 1.47524 * 125.76872 * 179.97438 * 6 5 4 8 8 O 1.21594 * 120.00283 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99652 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00063 * 179.97438 * 9 7 6 11 11 H 1.09005 * 110.63957 * 328.14482 * 10 9 7 12 12 C 1.54327 * 110.71866 * 91.47566 * 10 9 7 13 13 N 1.47024 * 107.26774 * 96.17335 * 12 10 9 14 14 C 1.36941 * 125.64618 * 179.20447 * 13 12 10 15 15 H 1.08005 * 119.99780 * 179.68989 * 14 13 12 16 16 C 1.38813 * 119.99913 * 359.69358 * 14 13 12 17 17 N 1.31616 * 119.99926 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99719 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47341 * 89.99896 * 18 16 14 20 20 H 1.48503 * 109.46756 * 209.99724 * 18 16 14 21 21 H 1.48496 * 109.46957 * 329.99498 * 18 16 14 22 22 C 1.47426 * 108.70449 * 358.94057 * 13 12 10 23 23 C 1.54912 * 104.83261 * 24.12870 * 22 13 12 24 24 C 1.53004 * 111.00325 * 81.06512 * 23 22 13 25 25 C 1.52998 * 111.00343 * 204.88065 * 23 22 13 26 26 N 1.34397 * 108.45492 * 0.23634 * 6 5 4 27 27 N 1.28764 * 109.52897 * 359.59146 * 26 6 5 28 28 H 1.08997 * 109.47486 * 60.00259 * 1 2 3 29 29 H 1.09003 * 109.47247 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47244 * 299.99354 * 1 2 3 31 31 H 1.09000 * 109.47230 * 240.00154 * 2 1 3 32 32 H 1.09003 * 109.47457 * 120.00205 * 2 1 3 33 33 H 1.09000 * 109.46926 * 59.99968 * 3 2 1 34 34 H 1.08997 * 109.46712 * 300.00214 * 3 2 1 35 35 H 1.08000 * 126.58159 * 359.97438 * 5 4 3 36 36 H 0.97005 * 120.00259 * 359.97438 * 9 7 6 37 37 H 1.08995 * 109.88184 * 336.75758 * 12 10 9 38 38 H 1.09002 * 109.88385 * 215.58765 * 12 10 9 39 39 H 0.97001 * 119.99407 * 180.02562 * 17 16 14 40 40 H 1.09002 * 110.36518 * 142.96440 * 22 13 12 41 41 H 1.08997 * 110.36787 * 265.28818 * 22 13 12 42 42 H 1.08994 * 109.46864 * 61.44984 * 24 23 22 43 43 H 1.09000 * 109.46578 * 181.45533 * 24 23 22 44 44 H 1.08996 * 109.46833 * 301.45173 * 24 23 22 45 45 H 1.08992 * 109.47271 * 58.54108 * 25 23 22 46 46 H 1.09003 * 109.47056 * 178.54990 * 25 23 22 47 47 H 1.09006 * 109.46578 * 298.54351 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.3090 2.0633 -0.8857 6 6 5.5944 1.7990 -0.5067 7 6 6.8108 2.2777 -1.1905 8 8 6.7164 2.9719 -2.1843 9 7 8.0268 1.9455 -0.7135 10 6 9.2348 2.4204 -1.3928 11 1 9.0617 2.5122 -2.4651 12 6 9.7053 3.7631 -0.7949 13 7 10.7435 3.4577 0.2003 14 6 11.4289 4.3787 0.9469 15 1 12.1727 4.0514 1.6583 16 6 11.1677 5.7329 0.7893 17 7 10.2616 6.1317 -0.0781 18 14 12.1032 6.9892 1.8071 19 1 13.3338 7.3959 1.0826 20 1 11.2456 8.1802 2.0336 21 1 12.4735 6.3901 3.1144 22 6 10.9200 1.9955 0.2660 23 6 10.4319 1.4750 -1.1090 24 6 11.5200 1.6332 -2.1730 25 6 9.9711 0.0193 -1.0121 26 7 5.5635 1.0243 0.5911 27 7 4.3404 0.7974 0.9235 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9968 2.6559 -1.7329 36 1 8.1022 1.3920 0.0795 37 1 8.8679 4.2684 -0.3140 38 1 10.1198 4.3941 -1.5812 39 1 10.0794 7.0780 -0.1884 40 1 11.9707 1.7466 0.4146 41 1 10.3127 1.5758 1.0679 42 1 12.3928 1.0448 -1.8902 43 1 11.1420 1.2839 -3.1338 44 1 11.8001 2.6835 -2.2527 45 1 9.1677 -0.0596 -0.2798 46 1 9.6096 -0.3129 -1.9853 47 1 10.8079 -0.6068 -0.7023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977412255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:25 Heat of formation + Delta-G solvation = 55.520890 kcal Electronic energy + Delta-G solvation = -27625.632244 eV Core-core repulsion = 23845.249541 eV Total energy + Delta-G solvation = -3780.382703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.24213 -41.08415 -39.30501 -36.92118 -35.68540 -34.51995 -33.54107 -32.59290 -31.96962 -29.78717 -28.18091 -27.81087 -27.38310 -25.55402 -24.32592 -23.61318 -22.53129 -22.07232 -21.22560 -20.23577 -19.00816 -18.66864 -17.37939 -17.28296 -17.18751 -16.61270 -16.14765 -15.79440 -15.68811 -15.49995 -15.41340 -15.17353 -14.74907 -14.42102 -13.97653 -13.76260 -13.64252 -13.43452 -13.21514 -13.13720 -12.98030 -12.94418 -12.81828 -12.68294 -12.56108 -12.49566 -12.24305 -12.11110 -11.84610 -11.74721 -11.72597 -11.51672 -11.29953 -11.27278 -11.19725 -10.72687 -10.39679 -9.93941 -8.87123 -7.81764 -5.18079 0.14343 0.61922 1.10121 1.44364 1.46928 1.55327 2.12802 2.29392 2.50325 3.17844 3.34936 3.36710 3.52080 3.73736 3.81761 3.83321 3.96258 3.98828 4.09393 4.15859 4.23087 4.41787 4.46767 4.51747 4.54413 4.67433 4.75828 4.83867 4.86908 4.89878 4.97354 5.06356 5.11925 5.15477 5.18221 5.19591 5.30709 5.33189 5.35950 5.47328 5.50259 5.58410 5.72503 5.75969 6.19631 6.47042 6.90138 7.10107 7.18140 7.79326 8.44191 9.27690 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.015274 B = 0.003118 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.745971 B = 8977.851004 C = 9997.398547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.109 3.891 4 N -0.347 5.347 5 C 0.110 3.890 6 C -0.123 4.123 7 C 0.600 3.400 8 O -0.572 6.572 9 N -0.689 5.689 10 C 0.136 3.864 11 H 0.089 0.911 12 C 0.194 3.806 13 N -0.620 5.620 14 C -0.236 4.236 15 H 0.085 0.915 16 C -0.071 4.071 17 N -0.953 5.953 18 Si 0.978 3.022 19 H -0.284 1.284 20 H -0.299 1.299 21 H -0.268 1.268 22 C 0.137 3.863 23 C -0.074 4.074 24 C -0.121 4.121 25 C -0.124 4.124 26 N -0.226 5.226 27 N -0.084 5.084 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.111 0.889 34 H 0.140 0.860 35 H 0.236 0.764 36 H 0.409 0.591 37 H -0.001 1.001 38 H 0.013 0.987 39 H 0.244 0.756 40 H 0.051 0.949 41 H 0.023 0.977 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.032 0.968 45 H 0.054 0.946 46 H 0.067 0.933 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.946 -15.279 -3.407 23.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C -0.009 4.009 4 N -0.132 5.132 5 C -0.048 4.048 6 C -0.263 4.263 7 C 0.385 3.615 8 O -0.451 6.451 9 N -0.339 5.339 10 C 0.030 3.970 11 H 0.107 0.893 12 C 0.067 3.933 13 N -0.347 5.347 14 C -0.365 4.365 15 H 0.103 0.897 16 C -0.263 4.263 17 N -0.602 5.602 18 Si 0.807 3.193 19 H -0.211 1.211 20 H -0.225 1.225 21 H -0.193 1.193 22 C 0.012 3.988 23 C -0.076 4.076 24 C -0.179 4.179 25 C -0.182 4.182 26 N -0.100 5.100 27 N -0.065 5.065 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.130 0.870 34 H 0.158 0.842 35 H 0.253 0.747 36 H 0.246 0.754 37 H 0.017 0.983 38 H 0.031 0.969 39 H 0.053 0.947 40 H 0.069 0.931 41 H 0.041 0.959 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.051 0.949 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.987 -15.474 -2.794 23.891 hybrid contribution 0.423 1.750 0.151 1.807 sum -17.564 -13.724 -2.643 22.446 Atomic orbital electron populations 1.21677 0.92202 1.03141 1.03271 1.21779 0.98201 0.94081 1.03072 1.22685 0.69819 1.00830 1.07616 1.50847 1.10099 1.33721 1.18531 1.23816 0.89010 0.95822 0.96194 1.21407 0.94999 1.09832 1.00057 1.17066 0.82489 0.79010 0.82917 1.90767 1.87119 1.39797 1.27422 1.45715 1.04605 1.52399 1.31154 1.22199 0.83890 0.94459 0.96428 0.89315 1.21106 0.89908 0.91713 0.90554 1.44692 1.43442 1.01495 1.45033 1.19467 1.14955 0.87004 1.15059 0.89678 1.25676 1.00540 0.99027 1.01071 1.70227 1.36801 1.13851 1.39312 0.85076 0.77374 0.78342 0.78543 1.21126 1.22548 1.19273 1.21889 0.98739 0.83438 0.94754 1.21982 0.93994 0.95500 0.96087 1.21577 0.97576 1.01202 0.97525 1.21644 1.01594 0.92533 1.02398 1.74609 1.13883 1.10937 1.10525 1.81841 0.93343 1.18418 1.12880 0.90908 0.91709 0.91541 0.91613 0.91831 0.87043 0.84164 0.74741 0.75383 0.98280 0.96864 0.94704 0.93111 0.95896 0.90589 0.91055 0.94866 0.92746 0.91407 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 71.98 0.71 0.02 16 2 C -0.13 -1.20 6.14 30.59 0.19 -1.02 16 3 C 0.11 0.98 6.54 86.38 0.56 1.55 16 4 N -0.35 -6.74 3.69 -347.10 -1.28 -8.02 16 5 C 0.11 2.43 11.27 83.85 0.95 3.37 16 6 C -0.12 -3.83 6.99 40.82 0.29 -3.54 16 7 C 0.60 22.48 7.82 86.69 0.68 23.16 16 8 O -0.57 -24.29 16.51 -4.01 -0.07 -24.36 16 9 N -0.69 -25.71 4.41 -440.08 -1.94 -27.65 16 10 C 0.14 5.50 2.59 46.18 0.12 5.62 16 11 H 0.09 3.65 7.45 -2.38 -0.02 3.63 16 12 C 0.19 10.27 4.73 86.73 0.41 10.68 16 13 N -0.62 -32.71 3.38 -691.96 -2.34 -35.05 16 14 C -0.24 -13.58 10.28 84.03 0.86 -12.71 16 15 H 0.09 4.64 7.83 -2.91 -0.02 4.62 16 16 C -0.07 -4.18 5.49 84.86 0.47 -3.72 16 17 N -0.95 -60.51 10.31 21.65 0.22 -60.28 16 18 Si 0.98 47.62 29.55 68.60 2.03 49.65 16 19 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 20 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 22 C 0.14 5.57 6.12 86.86 0.53 6.10 16 23 C -0.07 -2.49 0.83 -50.79 -0.04 -2.54 16 24 C -0.12 -3.80 8.61 71.98 0.62 -3.18 16 25 C -0.12 -3.14 8.35 71.98 0.60 -2.54 16 26 N -0.23 -7.18 12.04 -49.99 -0.60 -7.78 16 27 N -0.08 -2.31 13.65 37.02 0.51 -1.80 16 28 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.14 0.34 8.08 -2.39 -0.02 0.32 16 35 H 0.24 3.49 8.06 -2.91 -0.02 3.47 16 36 H 0.41 14.35 6.74 -92.70 -0.62 13.73 16 37 H 0.00 -0.06 7.41 -2.39 -0.02 -0.08 16 38 H 0.01 0.80 7.38 -2.39 -0.02 0.78 16 39 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 40 H 0.05 1.98 8.05 -2.39 -0.02 1.96 16 41 H 0.02 0.93 8.04 -2.39 -0.02 0.91 16 42 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.03 1.27 7.81 -2.39 -0.02 1.25 16 45 H 0.05 1.40 6.27 -2.39 -0.02 1.38 16 46 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -79.88 383.38 3.81 -76.07 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.34 Total: 17.98 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: 6.94 Total: 21.25 kcal Atomic # 7 Polarization: -135.16 SS G_CDS: -5.44 Total: -140.59 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.07 Total: -24.36 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -79.88 3.81 -76.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977412255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.594 kcal (2) G-P(sol) polarization free energy of solvation -79.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds