Wall clock time and date at job start Fri Apr 10 2020 18:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46894 * 2 1 4 4 C 1.53001 * 109.47062 * 240.00034 * 2 1 3 5 5 N 1.46500 * 109.47241 * 119.99943 * 2 1 3 6 6 C 1.34814 * 126.59443 * 75.27752 * 5 2 1 7 7 C 1.36591 * 106.83945 * 180.10692 * 6 5 2 8 8 C 1.47526 * 125.76839 * 179.89750 * 7 6 5 9 9 O 1.21593 * 120.00105 * 6.13187 * 8 7 6 10 10 N 1.34776 * 119.99903 * 186.13301 * 8 7 6 11 11 C 1.48212 * 119.97191 * 175.21075 * 10 8 7 12 12 C 1.47140 * 110.34072 * 102.51586 * 11 10 8 13 13 C 1.53796 * 111.84268 * 58.30018 * 12 11 10 14 14 N 1.43472 * 107.95665 * 281.66527 * 13 12 11 15 15 C 1.36935 * 118.93928 * 273.60591 * 14 13 12 16 16 H 1.07997 * 119.99813 * 21.30791 * 15 14 13 17 17 C 1.38809 * 119.99666 * 201.29184 * 15 14 13 18 18 N 1.31623 * 119.99948 * 35.73022 * 17 15 14 19 19 Si 1.86797 * 119.99950 * 215.72158 * 17 15 14 20 20 H 1.48504 * 109.46992 * 180.02562 * 19 17 15 21 21 H 1.48497 * 109.47214 * 60.00643 * 19 17 15 22 22 H 1.48497 * 109.47562 * 300.00653 * 19 17 15 23 23 C 1.48857 * 122.11464 * 93.88905 * 14 13 12 24 24 C 1.43626 * 119.96971 * 355.24023 * 10 8 7 25 25 N 1.34397 * 108.46190 * 359.62913 * 7 6 5 26 26 N 1.28760 * 109.52049 * 0.23182 * 25 7 6 27 27 H 1.09007 * 109.46981 * 299.99466 * 1 2 3 28 28 H 1.08994 * 109.47495 * 60.00197 * 1 2 3 29 29 H 1.09004 * 109.46842 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46876 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47187 * 300.00181 * 3 2 1 32 32 H 1.08994 * 109.47345 * 60.00216 * 3 2 1 33 33 H 1.08997 * 109.46953 * 300.00312 * 4 2 1 34 34 H 1.09002 * 109.47000 * 59.99831 * 4 2 1 35 35 H 1.08992 * 109.47265 * 179.97438 * 4 2 1 36 36 H 1.08007 * 126.58202 * 359.96021 * 6 5 2 37 37 H 1.08996 * 109.32421 * 342.24981 * 11 10 8 38 38 H 1.09000 * 109.18534 * 222.69051 * 11 10 8 39 39 H 1.09005 * 109.00630 * 297.69110 * 12 11 10 40 40 H 1.08998 * 109.00511 * 178.91025 * 12 11 10 41 41 H 1.08997 * 109.76410 * 162.05043 * 13 12 11 42 42 H 1.08997 * 109.80452 * 41.30311 * 13 12 11 43 43 H 0.96999 * 120.00021 * 5.77750 * 18 17 15 44 44 H 1.09005 * 109.48100 * 80.34751 * 23 14 13 45 45 H 1.08999 * 109.47732 * 200.37501 * 23 14 13 46 46 H 1.08994 * 108.87344 * 31.41781 * 24 10 8 47 47 H 1.08998 * 108.87684 * 149.85788 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0184 -0.6906 1.1962 6 6 2.0269 -2.0219 1.4084 7 6 2.5639 -2.2215 2.6484 8 6 2.7664 -3.5294 3.3000 9 8 2.5488 -4.5554 2.6848 10 7 3.1926 -3.5871 4.5773 11 6 3.2943 -4.8958 5.2655 12 6 4.6969 -5.3371 5.3205 13 6 5.5902 -4.3157 6.0444 14 7 5.8670 -3.2444 5.1310 15 6 6.9269 -3.3631 4.2722 16 1 7.3224 -4.3395 4.0343 17 6 7.4927 -2.2285 3.7072 18 7 7.5728 -1.1156 4.4055 19 14 8.1406 -2.2810 1.9560 20 1 8.6915 -0.9508 1.5919 21 1 7.0341 -2.6295 1.0290 22 1 9.2118 -3.3044 1.8549 23 6 5.0427 -2.0056 5.0912 24 6 3.5472 -2.3803 5.2705 25 7 2.8819 -1.0253 3.1720 26 7 2.5722 -0.0944 2.3380 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1299 -0.7209 -1.2495 36 1 1.6745 -2.7842 0.7293 37 1 2.7046 -5.6351 4.7236 38 1 2.9069 -4.7983 6.2797 39 1 5.0661 -5.4741 4.3040 40 1 4.7488 -6.2901 5.8469 41 1 6.5227 -4.7914 6.3480 42 1 5.0719 -3.9278 6.9212 43 1 7.3143 -1.1100 5.3403 44 1 5.3522 -1.3371 5.8947 45 1 5.1803 -1.5082 4.1312 46 1 2.9312 -1.5636 4.8943 47 1 3.3444 -2.5115 6.3334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981293277.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:41 Heat of formation + Delta-G solvation = 102.742543 kcal Electronic energy + Delta-G solvation = -29275.856136 eV Core-core repulsion = 25497.521118 eV Total energy + Delta-G solvation = -3778.335018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.09510 -39.44788 -37.45688 -36.91784 -34.30790 -32.89356 -31.80230 -30.81677 -30.29703 -27.86849 -27.81236 -27.39023 -25.40328 -23.85056 -23.53766 -23.08060 -21.27274 -20.39826 -19.63621 -18.65495 -17.32119 -16.88520 -16.20777 -15.98060 -15.82396 -14.94810 -14.56892 -14.49926 -14.36551 -14.15617 -13.83893 -13.55462 -13.20810 -12.96631 -12.90636 -12.80817 -12.64245 -12.54847 -12.20829 -12.15847 -12.06538 -11.93431 -11.68952 -11.41812 -11.23392 -10.91735 -10.63052 -10.44221 -10.26577 -10.19425 -10.16017 -9.98309 -9.84738 -9.50212 -9.35323 -9.01159 -8.07984 -7.99739 -6.77846 -6.01923 -2.99376 1.36495 2.07948 2.09466 3.45454 3.54769 3.60407 3.75592 3.77238 4.07205 4.32407 4.42127 4.45795 4.71405 4.83443 5.03212 5.06673 5.16972 5.23524 5.25461 5.31045 5.33254 5.44325 5.48117 5.52626 5.61212 5.62380 5.72244 5.77883 5.81659 5.87357 5.96271 6.01711 6.20897 6.23515 6.45787 6.55306 6.55845 6.69025 6.85736 6.88733 7.07043 7.28564 7.37895 7.94911 8.18219 8.25248 8.64600 8.68759 9.27952 10.00429 10.40692 11.27607 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.012132 B = 0.005438 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.364531 B = 5147.584625 C = 6367.323924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.170 3.830 3 C -0.149 4.149 4 C -0.164 4.164 5 N -0.354 5.354 6 C 0.086 3.914 7 C -0.088 4.088 8 C 0.606 3.394 9 O -0.556 6.556 10 N -0.568 5.568 11 C 0.132 3.868 12 C -0.169 4.169 13 C 0.165 3.835 14 N -0.595 5.595 15 C -0.360 4.360 16 H 0.054 0.946 17 C -0.013 4.013 18 N -0.899 5.899 19 Si 1.040 2.960 20 H -0.287 1.287 21 H -0.298 1.298 22 H -0.293 1.293 23 C 0.147 3.853 24 C 0.074 3.926 25 N -0.192 5.192 26 N -0.066 5.066 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.197 0.803 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.044 0.956 42 H 0.030 0.970 43 H 0.268 0.732 44 H 0.028 0.972 45 H 0.077 0.923 46 H 0.107 0.893 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.631 1.930 -7.364 18.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.088 3.912 3 C -0.207 4.207 4 C -0.222 4.222 5 N -0.140 5.140 6 C -0.071 4.071 7 C -0.227 4.227 8 C 0.393 3.607 9 O -0.435 6.435 10 N -0.297 5.297 11 C 0.010 3.990 12 C -0.210 4.210 13 C 0.036 3.964 14 N -0.317 5.317 15 C -0.488 4.488 16 H 0.072 0.928 17 C -0.216 4.216 18 N -0.537 5.537 19 Si 0.870 3.130 20 H -0.213 1.213 21 H -0.226 1.226 22 H -0.220 1.220 23 C 0.021 3.979 24 C -0.052 4.052 25 N -0.065 5.065 26 N -0.045 5.045 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.213 0.787 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.078 0.922 44 H 0.046 0.954 45 H 0.095 0.905 46 H 0.124 0.876 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.685 3.679 -8.226 18.089 hybrid contribution -0.708 -1.919 0.582 2.127 sum -16.393 1.760 -7.644 18.173 Atomic orbital electron populations 1.22266 0.92147 1.03463 1.03802 1.21022 0.94902 0.94195 0.81112 1.21989 1.02938 0.92197 1.03536 1.22307 1.03068 1.01131 0.95725 1.50763 1.42497 1.05151 1.15636 1.23097 0.99369 0.86881 0.97735 1.21449 1.11708 0.93909 0.95605 1.16756 0.76883 0.85780 0.81329 1.90719 1.54754 1.34379 1.63630 1.47140 1.62384 1.08249 1.11901 1.20603 0.98080 0.84412 0.95888 1.21843 0.96251 0.99492 1.03434 1.20242 0.96147 0.89171 0.90823 1.43794 1.31024 1.16338 1.40592 1.19806 1.11185 0.94234 1.23607 0.92829 1.25439 0.97891 0.93497 1.04811 1.70796 1.42540 1.30720 1.09692 0.83894 0.75849 0.75404 0.77830 1.21258 1.22555 1.22012 1.22034 0.86358 0.88264 1.01272 1.22476 0.99874 0.87133 0.95671 1.74727 1.12176 0.98052 1.21526 1.81988 1.15169 1.17706 0.89664 0.91294 0.89869 0.91518 0.90972 0.90390 0.90621 0.91228 0.89615 0.90912 0.78663 0.90394 0.91960 0.91105 0.92653 0.93730 0.95127 0.92153 0.95433 0.90462 0.87603 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 8.74 37.16 0.32 -0.77 16 2 C 0.17 1.58 1.25 -131.82 -0.16 1.42 16 3 C -0.15 -1.33 8.11 37.16 0.30 -1.03 16 4 C -0.16 -1.27 8.30 37.16 0.31 -0.97 16 5 N -0.35 -4.86 3.44 -48.35 -0.17 -5.03 16 6 C 0.09 1.27 10.43 -16.84 -0.18 1.10 16 7 C -0.09 -1.65 6.69 -83.55 -0.56 -2.21 16 8 C 0.61 12.46 7.66 -12.47 -0.10 12.37 16 9 O -0.56 -12.15 16.34 5.28 0.09 -12.06 16 10 N -0.57 -11.23 2.46 -177.67 -0.44 -11.67 16 11 C 0.13 2.32 5.67 -5.91 -0.03 2.29 16 12 C -0.17 -3.25 5.64 -29.13 -0.16 -3.41 16 13 C 0.16 3.54 5.63 -5.23 -0.03 3.51 16 14 N -0.59 -15.20 2.44 -171.78 -0.42 -15.62 16 15 C -0.36 -10.41 9.07 -15.06 -0.14 -10.55 16 16 H 0.05 1.60 8.03 -52.49 -0.42 1.18 16 17 C -0.01 -0.38 4.34 -17.43 -0.08 -0.45 16 18 N -0.90 -27.55 12.58 55.49 0.70 -26.85 16 19 Si 1.04 26.82 30.04 -169.99 -5.11 21.71 16 20 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 21 H -0.30 -7.66 7.11 56.52 0.40 -7.25 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 C 0.15 3.55 5.06 -1.56 -0.01 3.54 16 24 C 0.07 1.47 4.84 -4.39 -0.02 1.45 16 25 N -0.19 -3.72 7.95 32.85 0.26 -3.46 16 26 N -0.07 -1.15 12.91 60.35 0.78 -0.37 16 27 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 33 H 0.07 0.50 7.43 -51.93 -0.39 0.11 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.20 2.30 7.62 -52.48 -0.40 1.90 16 37 H 0.08 1.35 7.18 -51.93 -0.37 0.98 16 38 H 0.06 0.94 8.05 -51.93 -0.42 0.52 16 39 H 0.07 1.62 7.91 -51.93 -0.41 1.21 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.04 0.99 8.02 -51.93 -0.42 0.57 16 42 H 0.03 0.60 7.59 -51.93 -0.39 0.21 16 43 H 0.27 8.26 7.04 -40.82 -0.29 7.98 16 44 H 0.03 0.69 7.43 -51.93 -0.39 0.31 16 45 H 0.08 2.13 6.11 -51.93 -0.32 1.81 16 46 H 0.11 2.05 4.75 -52.37 -0.25 1.80 16 47 H 0.05 0.97 7.73 -51.93 -0.40 0.57 16 LS Contribution 369.00 15.07 5.56 5.56 Total: -1.00 -35.18 369.00 -6.73 -41.91 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.46 Total: -0.40 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -0.53 Total: 6.29 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: 0.72 Total: -63.01 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 26.82 SS G_CDS: -5.11 Total: 21.71 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.18 -6.73 -41.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981293277.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.648 kcal (2) G-P(sol) polarization free energy of solvation -35.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds