Wall clock time and date at job start Fri Apr 10 2020 18:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46894 * 2 1 4 4 C 1.53001 * 109.47062 * 240.00034 * 2 1 3 5 5 N 1.46500 * 109.47241 * 119.99943 * 2 1 3 6 6 C 1.34814 * 126.59443 * 75.27752 * 5 2 1 7 7 C 1.36591 * 106.83945 * 180.10692 * 6 5 2 8 8 C 1.47526 * 125.76839 * 179.89750 * 7 6 5 9 9 O 1.21593 * 120.00105 * 6.13187 * 8 7 6 10 10 N 1.34776 * 119.99903 * 186.13301 * 8 7 6 11 11 C 1.48212 * 119.97191 * 175.21075 * 10 8 7 12 12 C 1.47140 * 110.34072 * 102.51586 * 11 10 8 13 13 C 1.53796 * 111.84268 * 58.30018 * 12 11 10 14 14 N 1.43472 * 107.95665 * 281.66527 * 13 12 11 15 15 C 1.36935 * 118.93928 * 273.60591 * 14 13 12 16 16 H 1.07997 * 119.99813 * 21.30791 * 15 14 13 17 17 C 1.38809 * 119.99666 * 201.29184 * 15 14 13 18 18 N 1.31623 * 119.99948 * 35.73022 * 17 15 14 19 19 Si 1.86797 * 119.99950 * 215.72158 * 17 15 14 20 20 H 1.48504 * 109.46992 * 180.02562 * 19 17 15 21 21 H 1.48497 * 109.47214 * 60.00643 * 19 17 15 22 22 H 1.48497 * 109.47562 * 300.00653 * 19 17 15 23 23 C 1.48857 * 122.11464 * 93.88905 * 14 13 12 24 24 C 1.43626 * 119.96971 * 355.24023 * 10 8 7 25 25 N 1.34397 * 108.46190 * 359.62913 * 7 6 5 26 26 N 1.28760 * 109.52049 * 0.23182 * 25 7 6 27 27 H 1.09007 * 109.46981 * 299.99466 * 1 2 3 28 28 H 1.08994 * 109.47495 * 60.00197 * 1 2 3 29 29 H 1.09004 * 109.46842 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46876 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47187 * 300.00181 * 3 2 1 32 32 H 1.08994 * 109.47345 * 60.00216 * 3 2 1 33 33 H 1.08997 * 109.46953 * 300.00312 * 4 2 1 34 34 H 1.09002 * 109.47000 * 59.99831 * 4 2 1 35 35 H 1.08992 * 109.47265 * 179.97438 * 4 2 1 36 36 H 1.08007 * 126.58202 * 359.96021 * 6 5 2 37 37 H 1.08996 * 109.32421 * 342.24981 * 11 10 8 38 38 H 1.09000 * 109.18534 * 222.69051 * 11 10 8 39 39 H 1.09005 * 109.00630 * 297.69110 * 12 11 10 40 40 H 1.08998 * 109.00511 * 178.91025 * 12 11 10 41 41 H 1.08997 * 109.76410 * 162.05043 * 13 12 11 42 42 H 1.08997 * 109.80452 * 41.30311 * 13 12 11 43 43 H 0.96999 * 120.00021 * 5.77750 * 18 17 15 44 44 H 1.09005 * 109.48100 * 80.34751 * 23 14 13 45 45 H 1.08999 * 109.47732 * 200.37501 * 23 14 13 46 46 H 1.08994 * 108.87344 * 31.41781 * 24 10 8 47 47 H 1.08998 * 108.87684 * 149.85788 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0184 -0.6906 1.1962 6 6 2.0269 -2.0219 1.4084 7 6 2.5639 -2.2215 2.6484 8 6 2.7664 -3.5294 3.3000 9 8 2.5488 -4.5554 2.6848 10 7 3.1926 -3.5871 4.5773 11 6 3.2943 -4.8958 5.2655 12 6 4.6969 -5.3371 5.3205 13 6 5.5902 -4.3157 6.0444 14 7 5.8670 -3.2444 5.1310 15 6 6.9269 -3.3631 4.2722 16 1 7.3224 -4.3395 4.0343 17 6 7.4927 -2.2285 3.7072 18 7 7.5728 -1.1156 4.4055 19 14 8.1406 -2.2810 1.9560 20 1 8.6915 -0.9508 1.5919 21 1 7.0341 -2.6295 1.0290 22 1 9.2118 -3.3044 1.8549 23 6 5.0427 -2.0056 5.0912 24 6 3.5472 -2.3803 5.2705 25 7 2.8819 -1.0253 3.1720 26 7 2.5722 -0.0944 2.3380 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1299 -0.7209 -1.2495 36 1 1.6745 -2.7842 0.7293 37 1 2.7046 -5.6351 4.7236 38 1 2.9069 -4.7983 6.2797 39 1 5.0661 -5.4741 4.3040 40 1 4.7488 -6.2901 5.8469 41 1 6.5227 -4.7914 6.3480 42 1 5.0719 -3.9278 6.9212 43 1 7.3143 -1.1100 5.3403 44 1 5.3522 -1.3371 5.8947 45 1 5.1803 -1.5082 4.1312 46 1 2.9312 -1.5636 4.8943 47 1 3.3444 -2.5115 6.3334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981293277.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:40 Heat of formation + Delta-G solvation = 79.746614 kcal Electronic energy + Delta-G solvation = -29276.853315 eV Core-core repulsion = 25497.521118 eV Total energy + Delta-G solvation = -3779.332197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.34090 -40.97985 -38.69560 -38.30166 -36.14537 -34.53396 -32.99020 -32.74774 -31.66436 -29.27334 -28.47509 -28.40998 -27.12073 -25.52533 -25.06301 -24.54308 -22.73019 -21.52932 -21.49412 -20.01804 -19.25325 -18.16991 -17.63304 -17.39755 -17.06650 -16.40341 -16.15758 -15.96160 -15.65815 -15.53293 -15.18100 -15.04409 -14.80048 -14.58307 -14.35424 -13.88936 -13.71216 -13.64778 -13.38692 -13.28817 -13.18647 -12.94627 -12.86668 -12.79127 -12.58843 -12.46974 -12.15503 -12.07501 -12.02882 -11.97026 -11.81088 -11.60930 -11.39228 -11.22379 -11.01456 -10.34441 -10.27919 -9.58974 -8.88896 -8.30069 -5.24844 0.16998 0.65714 1.07820 1.44005 1.50868 1.70035 2.00244 2.28114 2.59516 3.08711 3.18222 3.25169 3.58917 3.65151 3.69973 3.76400 3.93035 4.03109 4.15397 4.20927 4.25146 4.36915 4.44687 4.52202 4.55905 4.59589 4.65949 4.68579 4.70531 4.78453 4.78581 4.80749 4.98824 5.05498 5.07206 5.12977 5.17965 5.19360 5.27403 5.31507 5.45747 5.58208 5.73607 5.89114 6.36061 6.43075 6.89715 7.12802 7.14612 7.86288 8.25498 8.96229 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.012132 B = 0.005438 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.364531 B = 5147.584625 C = 6367.323924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.156 3.844 3 C -0.148 4.148 4 C -0.162 4.162 5 N -0.337 5.337 6 C 0.102 3.898 7 C -0.123 4.123 8 C 0.599 3.401 9 O -0.576 6.576 10 N -0.573 5.573 11 C 0.127 3.873 12 C -0.153 4.153 13 C 0.158 3.842 14 N -0.608 5.608 15 C -0.360 4.360 16 H 0.039 0.961 17 C -0.059 4.059 18 N -0.922 5.922 19 Si 1.082 2.918 20 H -0.288 1.288 21 H -0.299 1.299 22 H -0.273 1.273 23 C 0.157 3.843 24 C 0.089 3.911 25 N -0.220 5.220 26 N -0.089 5.089 27 H 0.057 0.943 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.115 0.885 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.120 0.880 35 H 0.049 0.951 36 H 0.229 0.771 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.027 0.973 40 H 0.092 0.908 41 H 0.033 0.967 42 H 0.056 0.944 43 H 0.255 0.745 44 H 0.012 0.988 45 H 0.038 0.962 46 H 0.112 0.888 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.877 1.310 -8.662 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.076 3.924 3 C -0.205 4.205 4 C -0.220 4.220 5 N -0.123 5.123 6 C -0.056 4.056 7 C -0.263 4.263 8 C 0.387 3.613 9 O -0.457 6.457 10 N -0.302 5.302 11 C 0.007 3.993 12 C -0.194 4.194 13 C 0.031 3.969 14 N -0.332 5.332 15 C -0.490 4.490 16 H 0.057 0.943 17 C -0.258 4.258 18 N -0.563 5.563 19 Si 0.909 3.091 20 H -0.214 1.214 21 H -0.227 1.227 22 H -0.199 1.199 23 C 0.031 3.969 24 C -0.037 4.037 25 N -0.092 5.092 26 N -0.068 5.068 27 H 0.076 0.924 28 H 0.134 0.866 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.133 0.867 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.138 0.862 35 H 0.068 0.932 36 H 0.245 0.755 37 H 0.102 0.898 38 H 0.118 0.882 39 H 0.046 0.954 40 H 0.110 0.890 41 H 0.052 0.948 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.030 0.970 45 H 0.057 0.943 46 H 0.129 0.871 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.944 3.057 -9.507 20.536 hybrid contribution -0.046 -1.728 0.931 1.964 sum -17.990 1.328 -8.576 19.974 Atomic orbital electron populations 1.22273 0.89579 1.04260 1.04884 1.21641 0.96774 0.94104 0.79913 1.22025 1.01333 0.92400 1.04783 1.22363 1.01616 1.02060 0.95986 1.51195 1.40482 1.04975 1.15686 1.23527 0.97513 0.87795 0.96757 1.21543 1.14094 0.93310 0.97353 1.17086 0.76478 0.86264 0.81516 1.90684 1.55825 1.35145 1.64037 1.47292 1.62028 1.08872 1.11973 1.20803 0.97045 0.83655 0.97839 1.21633 0.96473 1.00464 1.00790 1.20448 0.96533 0.88603 0.91285 1.43994 1.30523 1.17506 1.41162 1.19926 1.11681 0.93398 1.23951 0.94346 1.26465 0.98715 0.93422 1.07236 1.70897 1.44805 1.31401 1.09163 0.83286 0.75859 0.75759 0.74164 1.21383 1.22692 1.19864 1.21827 0.89158 0.87388 0.98562 1.22242 0.96414 0.87733 0.97297 1.74656 1.13158 0.98550 1.22884 1.81880 1.16151 1.17856 0.90946 0.92428 0.86552 0.90877 0.93476 0.86692 0.91830 0.90269 0.86162 0.93227 0.75514 0.89835 0.88171 0.95421 0.89015 0.94821 0.92563 0.93523 0.97046 0.94306 0.87075 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.74 71.98 0.63 -0.99 16 2 C 0.16 2.58 1.25 3.60 0.00 2.59 16 3 C -0.15 -2.44 8.11 71.98 0.58 -1.86 16 4 C -0.16 -2.07 8.30 71.98 0.60 -1.47 16 5 N -0.34 -9.02 3.44 -306.89 -1.06 -10.07 16 6 C 0.10 2.94 10.43 83.85 0.87 3.82 16 7 C -0.12 -4.65 6.69 40.82 0.27 -4.37 16 8 C 0.60 24.52 7.66 86.69 0.66 25.18 16 9 O -0.58 -24.92 16.34 -4.01 -0.07 -24.98 16 10 N -0.57 -22.20 2.46 -834.29 -2.05 -24.25 16 11 C 0.13 4.20 5.67 84.23 0.48 4.68 16 12 C -0.15 -5.65 5.64 29.04 0.16 -5.49 16 13 C 0.16 6.69 5.63 87.21 0.49 7.18 16 14 N -0.61 -31.59 2.44 -697.39 -1.70 -33.29 16 15 C -0.36 -21.36 9.07 84.03 0.76 -20.60 16 16 H 0.04 2.36 8.03 -2.91 -0.02 2.33 16 17 C -0.06 -3.59 4.34 84.86 0.37 -3.22 16 18 N -0.92 -58.40 12.58 21.65 0.27 -58.13 16 19 Si 1.08 55.48 30.04 68.60 2.06 57.54 16 20 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 21 H -0.30 -15.25 7.11 99.48 0.71 -14.55 16 22 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 23 C 0.16 7.77 5.06 86.68 0.44 8.21 16 24 C 0.09 3.49 4.84 87.67 0.42 3.91 16 25 N -0.22 -8.74 7.95 -50.00 -0.40 -9.14 16 26 N -0.09 -3.17 12.91 37.02 0.48 -2.69 16 27 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.20 8.06 -2.39 -0.02 1.18 16 33 H 0.08 0.87 7.43 -2.39 -0.02 0.86 16 34 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.23 4.83 7.62 -2.91 -0.02 4.81 16 37 H 0.08 2.71 7.18 -2.39 -0.02 2.70 16 38 H 0.10 2.59 8.05 -2.39 -0.02 2.57 16 39 H 0.03 1.25 7.91 -2.38 -0.02 1.23 16 40 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.03 1.48 8.02 -2.39 -0.02 1.46 16 42 H 0.06 2.09 7.59 -2.39 -0.02 2.07 16 43 H 0.26 16.39 7.04 -92.71 -0.65 15.74 16 44 H 0.01 0.61 7.43 -2.38 -0.02 0.59 16 45 H 0.04 2.22 6.11 -2.39 -0.01 2.20 16 46 H 0.11 4.34 4.75 -2.95 -0.01 4.32 16 47 H 0.08 2.75 7.73 -2.39 -0.02 2.74 16 Total: -1.00 -80.65 369.00 5.36 -75.29 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 1.07 Total: 12.17 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 6.75 Total: 17.56 kcal Atomic # 7 Polarization: -133.11 SS G_CDS: -4.46 Total: -137.57 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.07 Total: -24.98 kcal Atomic # 14 Polarization: 55.48 SS G_CDS: 2.06 Total: 57.54 kcal Total: -80.65 5.36 -75.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981293277.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.032 kcal (2) G-P(sol) polarization free energy of solvation -80.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds