Wall clock time and date at job start Fri Apr 10 2020 18:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00267 * 2 1 4 4 H 1.48502 * 109.47052 * 270.00099 * 3 2 1 5 5 H 1.48498 * 109.46904 * 29.99820 * 3 2 1 6 6 H 1.48502 * 109.47378 * 149.99597 * 3 2 1 7 7 C 1.38813 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99894 * 196.38268 * 7 2 1 9 9 N 1.36936 * 120.00155 * 16.38002 * 7 2 1 10 10 C 1.43458 * 118.94174 * 205.44349 * 9 7 2 11 11 C 1.53798 * 107.96080 * 273.63087 * 10 9 7 12 12 C 1.47718 * 111.83389 * 281.59694 * 11 10 9 13 13 N 1.48217 * 110.06400 * 58.36981 * 12 11 10 14 14 C 1.34773 * 119.97183 * 102.58991 * 13 12 11 15 15 O 1.21282 * 119.99890 * 185.42494 * 14 13 12 16 16 C 1.51486 * 120.00057 * 5.43360 * 14 13 12 17 17 C 1.52488 * 108.84408 * 62.31075 * 16 14 13 18 18 C 1.52210 * 112.46255 * 171.51441 * 17 16 14 19 19 C 1.52303 * 112.37231 * 313.98609 * 18 17 16 20 20 N 1.45887 * 112.14918 * 47.71155 * 19 18 17 21 21 C 1.45813 * 113.93226 * 70.15253 * 20 19 18 22 22 C 1.52176 * 112.60581 * 288.74106 * 21 20 19 23 23 C 1.52103 * 112.94149 * 314.24743 * 22 21 20 24 24 C 1.46478 * 111.98890 * 301.65770 * 20 19 18 25 25 C 1.43619 * 120.05606 * 282.31312 * 13 12 11 26 26 C 1.48863 * 118.93801 * 25.41679 * 9 7 2 27 27 H 0.97004 * 119.99730 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.76882 * 33.24716 * 10 9 7 29 29 H 1.09004 * 109.76670 * 153.96223 * 10 9 7 30 30 H 1.09003 * 109.00295 * 42.27340 * 11 10 9 31 31 H 1.09002 * 109.00975 * 161.13541 * 11 10 9 32 32 H 1.08995 * 109.40105 * 298.22163 * 12 11 10 33 33 H 1.09003 * 109.52891 * 178.58798 * 12 11 10 34 34 H 1.09645 * 109.12744 * 292.95102 * 17 16 14 35 35 H 1.09692 * 109.05289 * 50.24163 * 17 16 14 36 36 H 1.08689 * 110.86390 * 78.52341 * 18 17 16 37 37 H 1.10469 * 108.13485 * 194.86323 * 18 17 16 38 38 H 1.09643 * 109.07700 * 286.58995 * 19 18 17 39 39 H 1.09569 * 109.20961 * 169.10021 * 19 18 17 40 40 H 1.09670 * 109.22541 * 167.28987 * 21 20 19 41 41 H 1.09710 * 109.16574 * 50.02709 * 21 20 19 42 42 H 1.10658 * 107.81172 * 195.10840 * 22 21 20 43 43 H 1.08756 * 110.83316 * 79.38429 * 22 21 20 44 44 H 1.09720 * 109.27528 * 282.87714 * 23 22 21 45 45 H 1.09746 * 109.20189 * 165.64061 * 23 22 21 46 46 H 1.08861 * 109.95351 * 305.14894 * 24 20 19 47 47 H 1.08906 * 109.89726 * 184.13131 * 24 20 19 48 48 H 1.09006 * 108.87191 * 211.70243 * 25 13 12 49 49 H 1.08996 * 108.88069 * 330.13774 * 25 13 12 50 50 H 1.08998 * 109.47443 * 20.64509 * 26 9 7 51 51 H 1.08993 * 109.48341 * 260.60544 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0573 -1.2211 0.2644 9 7 1.3672 -2.3642 -0.3334 10 6 1.8713 -3.6073 0.1750 11 6 2.9599 -4.1075 -0.7895 12 6 2.3802 -4.7294 -1.9974 13 7 1.5115 -3.7575 -2.7028 14 6 1.9586 -3.1362 -3.8120 15 8 1.2891 -2.2697 -4.3333 16 6 3.2974 -3.5202 -4.4078 17 6 3.2425 -4.9811 -4.8418 18 6 4.4710 -5.3978 -5.6380 19 6 4.8393 -4.3808 -6.7102 20 7 4.8552 -3.0170 -6.1924 21 6 5.9571 -2.7446 -5.2771 22 6 5.7874 -3.4399 -3.9341 23 6 4.3849 -3.2937 -3.3638 24 6 3.5609 -2.6302 -5.6261 25 6 0.1916 -3.4816 -2.2086 26 6 0.1672 -2.2966 -1.2117 27 1 -0.4850 0.8401 0.0004 28 1 2.2989 -3.4542 1.1658 29 1 1.0638 -4.3373 0.2310 30 1 3.5844 -3.2652 -1.0874 31 1 3.5785 -4.8435 -0.2758 32 1 1.7891 -5.5986 -1.7090 33 1 3.1818 -5.0469 -2.6643 34 1 3.1544 -5.6168 -3.9528 35 1 2.3457 -5.1395 -5.4532 36 1 5.3145 -5.5848 -4.9786 37 1 4.2471 -6.3565 -6.1390 38 1 4.1151 -4.4469 -7.5307 39 1 5.8268 -4.6266 -7.1163 40 1 6.0330 -1.6626 -5.1152 41 1 6.8969 -3.0760 -5.7360 42 1 6.4951 -2.9761 -3.2210 43 1 6.0711 -4.4876 -4.0025 44 1 4.2697 -2.2887 -2.9389 45 1 4.2509 -4.0135 -2.5462 46 1 2.7739 -2.7765 -6.3639 47 1 3.5885 -1.5862 -5.3172 48 1 -0.4585 -3.2467 -3.0515 49 1 -0.1908 -4.3712 -1.7082 50 1 0.1735 -1.3568 -1.7639 51 1 -0.7339 -2.3537 -0.6011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981428030.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:45 Heat of formation + Delta-G solvation = 19.520897 kcal Electronic energy + Delta-G solvation = -30989.567310 eV Core-core repulsion = 27311.163873 eV Total energy + Delta-G solvation = -3678.403436 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.36234 -38.89786 -36.91527 -34.70358 -33.33266 -33.18513 -32.19316 -30.82360 -30.68107 -27.66546 -26.46493 -25.57591 -24.46422 -23.33450 -22.99068 -21.79508 -21.37686 -19.75948 -18.79160 -18.41350 -16.84207 -16.47759 -16.23680 -15.63869 -15.17343 -15.02256 -14.58372 -14.32951 -14.12950 -13.87670 -13.65663 -13.48507 -13.32783 -13.11101 -12.95463 -12.57862 -12.53134 -12.35905 -12.20079 -11.62005 -11.48050 -11.44276 -11.37900 -11.13179 -10.93864 -10.91863 -10.77544 -10.61593 -10.58239 -10.39903 -10.20341 -10.11360 -9.84585 -9.75068 -9.65069 -9.07496 -8.40313 -8.03998 -7.95988 -6.64725 -5.73322 -3.15441 3.15458 3.41728 3.47980 3.49607 3.56712 3.97622 4.50373 4.55476 4.64098 4.66625 4.87737 4.92908 5.05595 5.09728 5.14183 5.15709 5.35355 5.41183 5.46314 5.52461 5.52748 5.59647 5.63434 5.72184 5.74877 5.79171 5.83736 5.90026 5.92245 6.01940 6.05374 6.09981 6.14021 6.18359 6.26446 6.32762 6.39426 6.42272 6.46820 6.47667 6.77082 6.97797 7.05788 7.13518 7.28391 7.50016 7.67295 7.84595 7.99985 8.50235 8.77777 9.26116 9.94841 10.40427 11.34652 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.015420 B = 0.005252 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.375684 B = 5330.360599 C = 5915.666244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.008 3.992 3 Si 0.897 3.103 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.257 4.257 8 H 0.062 0.938 9 N -0.588 5.588 10 C 0.164 3.836 11 C -0.181 4.181 12 C 0.100 3.900 13 N -0.580 5.580 14 C 0.525 3.475 15 O -0.541 6.541 16 C -0.099 4.099 17 C -0.111 4.111 18 C -0.150 4.150 19 C 0.067 3.933 20 N -0.546 5.546 21 C 0.066 3.934 22 C -0.149 4.149 23 C -0.125 4.125 24 C 0.092 3.908 25 C 0.091 3.909 26 C 0.169 3.831 27 H 0.253 0.747 28 H 0.045 0.955 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.067 0.933 49 H 0.053 0.947 50 H 0.077 0.923 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.750 -13.855 -9.529 19.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.727 3.273 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.386 4.386 8 H 0.080 0.920 9 N -0.309 5.309 10 C 0.035 3.965 11 C -0.222 4.222 12 C -0.022 4.022 13 N -0.311 5.311 14 C 0.311 3.689 15 O -0.418 6.418 16 C -0.104 4.104 17 C -0.148 4.148 18 C -0.189 4.189 19 C -0.061 4.061 20 N -0.267 5.267 21 C -0.062 4.062 22 C -0.188 4.188 23 C -0.162 4.162 24 C -0.036 4.036 25 C -0.034 4.034 26 C 0.043 3.957 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.099 0.901 47 H 0.102 0.898 48 H 0.086 0.914 49 H 0.072 0.928 50 H 0.095 0.905 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.322 -12.975 -10.173 18.940 hybrid contribution 0.290 0.358 0.955 1.060 sum 9.611 -12.617 -9.218 18.345 Atomic orbital electron populations 1.70020 1.05212 1.25403 1.54056 1.24952 0.95207 0.98214 1.00674 0.86383 0.79084 0.84118 0.77730 1.21429 1.21780 1.20592 1.19081 0.92433 0.85210 1.41910 0.92005 1.43641 1.31841 1.01614 1.53833 1.20213 0.93422 0.88590 0.94234 1.22239 1.01479 1.00777 0.97687 1.21467 0.94589 0.91119 0.94990 1.47281 1.15876 1.42362 1.25576 1.20481 0.86969 0.81130 0.80314 1.90672 1.58272 1.30532 1.62291 1.21150 0.93811 0.97376 0.98068 1.21564 0.98392 0.94237 1.00599 1.22012 0.98358 0.99504 0.99068 1.21772 1.01830 0.86253 0.96291 1.60275 1.04014 1.22725 1.39651 1.21752 0.93356 1.00761 0.90314 1.21973 0.97053 1.01331 0.98413 1.21908 0.92427 1.04472 0.97442 1.21766 0.89855 0.98689 0.93273 1.21961 0.82978 0.99886 0.98614 1.21818 0.88776 0.95485 0.89628 0.93697 0.93718 0.94997 0.90567 0.92772 0.92112 0.88918 0.90572 0.91866 0.91324 0.92140 0.91107 0.91155 0.90912 0.91291 0.92000 0.91758 0.90915 0.89179 0.90088 0.89820 0.91437 0.92814 0.90496 0.94476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 11.05 55.49 0.61 -26.08 16 2 C 0.01 0.24 4.89 -17.43 -0.09 0.15 16 3 Si 0.90 22.53 29.58 -169.99 -5.03 17.50 16 4 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.26 -7.01 9.26 -15.06 -0.14 -7.15 16 8 H 0.06 1.68 7.88 -52.49 -0.41 1.26 16 9 N -0.59 -14.30 2.53 -171.99 -0.44 -14.73 16 10 C 0.16 3.24 5.63 -5.24 -0.03 3.22 16 11 C -0.18 -2.89 4.82 -28.87 -0.14 -3.03 16 12 C 0.10 1.43 4.46 -5.65 -0.03 1.40 16 13 N -0.58 -10.30 2.44 -176.00 -0.43 -10.73 16 14 C 0.52 9.81 6.31 -10.60 -0.07 9.74 16 15 O -0.54 -12.33 15.53 5.56 0.09 -12.25 16 16 C -0.10 -1.42 0.43 -155.74 -0.07 -1.49 16 17 C -0.11 -1.27 4.38 -27.40 -0.12 -1.39 16 18 C -0.15 -1.40 5.16 -27.49 -0.14 -1.55 16 19 C 0.07 0.66 5.77 -4.73 -0.03 0.64 16 20 N -0.55 -6.65 4.79 -236.54 -1.13 -7.79 16 21 C 0.07 0.74 5.76 -4.83 -0.03 0.71 16 22 C -0.15 -1.65 5.09 -27.61 -0.14 -1.79 16 23 C -0.13 -1.73 3.35 -27.47 -0.09 -1.82 16 24 C 0.09 1.37 4.18 -3.97 -0.02 1.35 16 25 C 0.09 1.77 5.21 -4.58 -0.02 1.75 16 26 C 0.17 4.09 5.19 -1.74 -0.01 4.08 16 27 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.04 0.91 8.02 -51.93 -0.42 0.49 16 29 H 0.03 0.59 7.59 -51.93 -0.39 0.20 16 30 H 0.08 1.40 5.87 -51.93 -0.30 1.09 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.78 8.05 -51.93 -0.42 0.36 16 33 H 0.09 1.14 2.35 -51.93 -0.12 1.02 16 34 H 0.08 0.82 5.07 -51.56 -0.26 0.56 16 35 H 0.06 0.77 8.14 -51.54 -0.42 0.35 16 36 H 0.07 0.61 5.65 -52.10 -0.29 0.32 16 37 H 0.06 0.48 8.26 -51.09 -0.42 0.06 16 38 H 0.07 0.70 8.20 -51.56 -0.42 0.28 16 39 H 0.07 0.60 8.10 -51.61 -0.42 0.18 16 40 H 0.07 0.87 8.20 -51.55 -0.42 0.44 16 41 H 0.07 0.65 8.11 -51.53 -0.42 0.23 16 42 H 0.06 0.66 8.28 -50.98 -0.42 0.24 16 43 H 0.06 0.63 5.75 -52.07 -0.30 0.33 16 44 H 0.07 1.26 7.92 -51.52 -0.41 0.85 16 45 H 0.09 1.20 3.20 -51.51 -0.17 1.03 16 46 H 0.08 1.25 8.05 -52.01 -0.42 0.83 16 47 H 0.08 1.43 8.10 -51.98 -0.42 1.00 16 48 H 0.07 1.35 7.46 -51.93 -0.39 0.97 16 49 H 0.05 0.92 7.73 -51.93 -0.40 0.52 16 50 H 0.08 2.20 6.59 -51.93 -0.34 1.86 16 51 H 0.04 0.96 7.99 -51.93 -0.42 0.54 16 LS Contribution 354.17 15.07 5.34 5.34 Total: -1.00 -31.48 354.17 -10.53 -42.01 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -8.38 Total: 1.92 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -1.15 Total: 4.81 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -1.39 Total: -59.34 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.25 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.50 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.48 -10.53 -42.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981428030.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.531 kcal (2) G-P(sol) polarization free energy of solvation -31.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds