Wall clock time and date at job start Fri Apr 10 2020 18:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00267 * 2 1 4 4 H 1.48502 * 109.47052 * 270.00099 * 3 2 1 5 5 H 1.48498 * 109.46904 * 29.99820 * 3 2 1 6 6 H 1.48502 * 109.47378 * 149.99597 * 3 2 1 7 7 C 1.38813 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99894 * 196.38268 * 7 2 1 9 9 N 1.36936 * 120.00155 * 16.38002 * 7 2 1 10 10 C 1.43458 * 118.94174 * 205.44349 * 9 7 2 11 11 C 1.53798 * 107.96080 * 273.63087 * 10 9 7 12 12 C 1.47718 * 111.83389 * 281.59694 * 11 10 9 13 13 N 1.48217 * 110.06400 * 58.36981 * 12 11 10 14 14 C 1.34773 * 119.97183 * 102.58991 * 13 12 11 15 15 O 1.21282 * 119.99890 * 185.42494 * 14 13 12 16 16 C 1.51486 * 120.00057 * 5.43360 * 14 13 12 17 17 C 1.52488 * 108.84408 * 62.31075 * 16 14 13 18 18 C 1.52210 * 112.46255 * 171.51441 * 17 16 14 19 19 C 1.52303 * 112.37231 * 313.98609 * 18 17 16 20 20 N 1.45887 * 112.14918 * 47.71155 * 19 18 17 21 21 C 1.45813 * 113.93226 * 70.15253 * 20 19 18 22 22 C 1.52176 * 112.60581 * 288.74106 * 21 20 19 23 23 C 1.52103 * 112.94149 * 314.24743 * 22 21 20 24 24 C 1.46478 * 111.98890 * 301.65770 * 20 19 18 25 25 C 1.43619 * 120.05606 * 282.31312 * 13 12 11 26 26 C 1.48863 * 118.93801 * 25.41679 * 9 7 2 27 27 H 0.97004 * 119.99730 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.76882 * 33.24716 * 10 9 7 29 29 H 1.09004 * 109.76670 * 153.96223 * 10 9 7 30 30 H 1.09003 * 109.00295 * 42.27340 * 11 10 9 31 31 H 1.09002 * 109.00975 * 161.13541 * 11 10 9 32 32 H 1.08995 * 109.40105 * 298.22163 * 12 11 10 33 33 H 1.09003 * 109.52891 * 178.58798 * 12 11 10 34 34 H 1.09645 * 109.12744 * 292.95102 * 17 16 14 35 35 H 1.09692 * 109.05289 * 50.24163 * 17 16 14 36 36 H 1.08689 * 110.86390 * 78.52341 * 18 17 16 37 37 H 1.10469 * 108.13485 * 194.86323 * 18 17 16 38 38 H 1.09643 * 109.07700 * 286.58995 * 19 18 17 39 39 H 1.09569 * 109.20961 * 169.10021 * 19 18 17 40 40 H 1.09670 * 109.22541 * 167.28987 * 21 20 19 41 41 H 1.09710 * 109.16574 * 50.02709 * 21 20 19 42 42 H 1.10658 * 107.81172 * 195.10840 * 22 21 20 43 43 H 1.08756 * 110.83316 * 79.38429 * 22 21 20 44 44 H 1.09720 * 109.27528 * 282.87714 * 23 22 21 45 45 H 1.09746 * 109.20189 * 165.64061 * 23 22 21 46 46 H 1.08861 * 109.95351 * 305.14894 * 24 20 19 47 47 H 1.08906 * 109.89726 * 184.13131 * 24 20 19 48 48 H 1.09006 * 108.87191 * 211.70243 * 25 13 12 49 49 H 1.08996 * 108.88069 * 330.13774 * 25 13 12 50 50 H 1.08998 * 109.47443 * 20.64509 * 26 9 7 51 51 H 1.08993 * 109.48341 * 260.60544 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0573 -1.2211 0.2644 9 7 1.3672 -2.3642 -0.3334 10 6 1.8713 -3.6073 0.1750 11 6 2.9599 -4.1075 -0.7895 12 6 2.3802 -4.7294 -1.9974 13 7 1.5115 -3.7575 -2.7028 14 6 1.9586 -3.1362 -3.8120 15 8 1.2891 -2.2697 -4.3333 16 6 3.2974 -3.5202 -4.4078 17 6 3.2425 -4.9811 -4.8418 18 6 4.4710 -5.3978 -5.6380 19 6 4.8393 -4.3808 -6.7102 20 7 4.8552 -3.0170 -6.1924 21 6 5.9571 -2.7446 -5.2771 22 6 5.7874 -3.4399 -3.9341 23 6 4.3849 -3.2937 -3.3638 24 6 3.5609 -2.6302 -5.6261 25 6 0.1916 -3.4816 -2.2086 26 6 0.1672 -2.2966 -1.2117 27 1 -0.4850 0.8401 0.0004 28 1 2.2989 -3.4542 1.1658 29 1 1.0638 -4.3373 0.2310 30 1 3.5844 -3.2652 -1.0874 31 1 3.5785 -4.8435 -0.2758 32 1 1.7891 -5.5986 -1.7090 33 1 3.1818 -5.0469 -2.6643 34 1 3.1544 -5.6168 -3.9528 35 1 2.3457 -5.1395 -5.4532 36 1 5.3145 -5.5848 -4.9786 37 1 4.2471 -6.3565 -6.1390 38 1 4.1151 -4.4469 -7.5307 39 1 5.8268 -4.6266 -7.1163 40 1 6.0330 -1.6626 -5.1152 41 1 6.8969 -3.0760 -5.7360 42 1 6.4951 -2.9761 -3.2210 43 1 6.0711 -4.4876 -4.0025 44 1 4.2697 -2.2887 -2.9389 45 1 4.2509 -4.0135 -2.5462 46 1 2.7739 -2.7765 -6.3639 47 1 3.5885 -1.5862 -5.3172 48 1 -0.4585 -3.2467 -3.0515 49 1 -0.1908 -4.3712 -1.7082 50 1 0.1735 -1.3568 -1.7639 51 1 -0.7339 -2.3537 -0.6011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981428030.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:44 Heat of formation + Delta-G solvation = -1.509424 kcal Electronic energy + Delta-G solvation = -30990.479253 eV Core-core repulsion = 27311.163873 eV Total energy + Delta-G solvation = -3679.315380 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.54609 -40.18973 -38.54551 -36.36174 -34.62882 -34.10520 -33.80249 -32.54014 -31.76879 -29.39623 -27.42447 -27.19302 -25.98889 -24.84863 -24.21248 -22.97703 -22.37373 -21.48379 -20.06590 -19.53661 -18.70102 -17.87594 -17.57959 -16.98795 -16.66126 -16.13505 -16.01356 -15.66723 -15.62489 -15.43071 -15.11148 -14.74709 -14.69416 -14.28166 -14.16212 -13.88125 -13.72540 -13.61441 -13.51750 -13.22697 -13.10588 -12.89085 -12.60405 -12.51835 -12.45834 -12.26649 -12.23559 -12.11109 -11.84607 -11.76387 -11.70269 -11.63059 -11.40185 -11.32499 -10.72052 -10.55886 -10.47362 -9.51854 -8.98493 -8.68269 -7.88708 -5.31643 1.34373 1.39736 1.44628 1.69971 2.19396 2.46255 3.01287 3.25983 3.39104 3.61244 3.64373 3.69670 3.90464 3.98262 4.01485 4.12312 4.20924 4.24053 4.29631 4.33773 4.39480 4.46640 4.51608 4.52618 4.61027 4.69548 4.79371 4.82821 4.85679 4.90184 4.92819 4.95196 4.99381 5.04882 5.08974 5.11523 5.13518 5.23994 5.26720 5.30554 5.31773 5.49983 5.54246 5.57475 5.67253 5.86747 6.14340 6.36770 6.42602 6.55346 7.13947 7.31430 7.92544 8.33880 9.16214 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.015420 B = 0.005252 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.375684 B = 5330.360599 C = 5915.666244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.950 3.050 4 H -0.301 1.301 5 H -0.292 1.292 6 H -0.262 1.262 7 C -0.251 4.251 8 H 0.063 0.937 9 N -0.600 5.600 10 C 0.154 3.846 11 C -0.168 4.168 12 C 0.095 3.905 13 N -0.581 5.581 14 C 0.511 3.489 15 O -0.596 6.596 16 C -0.089 4.089 17 C -0.106 4.106 18 C -0.145 4.145 19 C 0.061 3.939 20 N -0.552 5.552 21 C 0.063 3.937 22 C -0.143 4.143 23 C -0.117 4.117 24 C 0.098 3.902 25 C 0.104 3.896 26 C 0.181 3.819 27 H 0.245 0.755 28 H 0.038 0.962 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.052 0.948 41 H 0.099 0.901 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.024 0.976 45 H 0.102 0.898 46 H 0.066 0.934 47 H 0.044 0.956 48 H 0.055 0.945 49 H 0.089 0.911 50 H 0.021 0.979 51 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.899 -18.080 -9.867 24.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.779 3.221 4 H -0.229 1.229 5 H -0.219 1.219 6 H -0.187 1.187 7 C -0.382 4.382 8 H 0.081 0.919 9 N -0.323 5.323 10 C 0.027 3.973 11 C -0.208 4.208 12 C -0.025 4.025 13 N -0.311 5.311 14 C 0.300 3.700 15 O -0.477 6.477 16 C -0.094 4.094 17 C -0.143 4.143 18 C -0.184 4.184 19 C -0.066 4.066 20 N -0.273 5.273 21 C -0.065 4.065 22 C -0.181 4.181 23 C -0.154 4.154 24 C -0.031 4.031 25 C -0.022 4.022 26 C 0.054 3.946 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.139 0.861 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.117 0.883 42 H 0.086 0.914 43 H 0.113 0.887 44 H 0.043 0.957 45 H 0.120 0.880 46 H 0.085 0.915 47 H 0.062 0.938 48 H 0.073 0.927 49 H 0.108 0.892 50 H 0.040 0.960 51 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 12.530 -17.268 -10.484 23.772 hybrid contribution -0.687 1.657 1.066 2.087 sum 11.843 -15.611 -9.418 21.741 Atomic orbital electron populations 1.70166 1.06422 1.25261 1.56254 1.25627 0.95927 1.01068 1.01940 0.85518 0.78772 0.80964 0.76825 1.22921 1.21850 1.18680 1.19371 0.92525 0.86504 1.39792 0.91915 1.43823 1.31566 1.02553 1.54328 1.20503 0.94983 0.86967 0.94816 1.22029 1.00082 1.01058 0.97673 1.21805 0.95367 0.90843 0.94450 1.47474 1.15610 1.42595 1.25412 1.21457 0.88123 0.80155 0.80254 1.90642 1.60188 1.32958 1.63945 1.21125 0.91076 0.99611 0.97543 1.21579 0.99676 0.91496 1.01578 1.21971 0.97501 1.00069 0.98839 1.21927 1.03338 0.84822 0.96518 1.60231 1.02562 1.24863 1.39623 1.21829 0.94046 0.99935 0.90654 1.21943 0.94830 1.03250 0.98116 1.21852 0.94152 1.01892 0.97506 1.21489 0.91335 0.96856 0.93377 1.21625 0.84469 0.99035 0.97086 1.21448 0.88139 0.95184 0.89787 0.94574 0.94378 0.93117 0.93125 0.88306 0.88773 0.86087 0.88858 0.92634 0.89665 0.89566 0.91398 0.88601 0.92937 0.88287 0.91399 0.88667 0.95723 0.88027 0.91507 0.93784 0.92669 0.89231 0.96033 0.96904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.44 11.05 21.65 0.24 -58.20 16 2 C -0.05 -2.98 4.89 84.86 0.42 -2.57 16 3 Si 0.95 48.31 29.58 68.60 2.03 50.34 16 4 H -0.30 -15.85 7.11 99.48 0.71 -15.14 16 5 H -0.29 -14.76 7.11 99.48 0.71 -14.06 16 6 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.25 -14.12 9.26 84.03 0.78 -13.34 16 8 H 0.06 3.45 7.88 -2.91 -0.02 3.43 16 9 N -0.60 -29.74 2.53 -698.07 -1.77 -31.51 16 10 C 0.15 5.81 5.63 87.21 0.49 6.30 16 11 C -0.17 -4.81 4.82 29.21 0.14 -4.67 16 12 C 0.10 2.34 4.46 84.39 0.38 2.72 16 13 N -0.58 -20.17 2.44 -829.15 -2.03 -22.20 16 14 C 0.51 19.58 6.31 87.91 0.56 20.14 16 15 O -0.60 -29.20 15.53 -3.04 -0.05 -29.25 16 16 C -0.09 -2.48 0.43 -52.98 -0.02 -2.50 16 17 C -0.11 -2.06 4.38 30.16 0.13 -1.93 16 18 C -0.15 -1.95 5.16 30.10 0.16 -1.80 16 19 C 0.06 0.99 5.77 86.26 0.50 1.49 16 20 N -0.55 -12.62 4.79 -902.26 -4.32 -16.94 16 21 C 0.06 1.26 5.76 86.24 0.50 1.76 16 22 C -0.14 -2.69 5.09 30.03 0.15 -2.53 16 23 C -0.12 -3.05 3.35 30.12 0.10 -2.95 16 24 C 0.10 3.01 4.18 86.44 0.36 3.37 16 25 C 0.10 4.08 5.21 87.55 0.46 4.53 16 26 C 0.18 9.21 5.19 86.56 0.45 9.66 16 27 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 28 H 0.04 1.48 8.02 -2.39 -0.02 1.46 16 29 H 0.05 1.73 7.59 -2.39 -0.02 1.71 16 30 H 0.05 1.75 5.87 -2.39 -0.01 1.74 16 31 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.09 1.82 8.05 -2.39 -0.02 1.80 16 33 H 0.12 2.34 2.35 -2.39 -0.01 2.34 16 34 H 0.09 1.50 5.07 -2.04 -0.01 1.49 16 35 H 0.05 1.20 8.14 -2.02 -0.02 1.18 16 36 H 0.08 0.92 5.65 -2.55 -0.01 0.91 16 37 H 0.09 0.84 8.26 -1.60 -0.01 0.83 16 38 H 0.07 1.15 8.20 -2.04 -0.02 1.13 16 39 H 0.10 1.13 8.10 -2.08 -0.02 1.12 16 40 H 0.05 1.24 8.20 -2.03 -0.02 1.23 16 41 H 0.10 1.44 8.11 -2.01 -0.02 1.43 16 42 H 0.07 1.24 8.28 -1.49 -0.01 1.23 16 43 H 0.10 1.27 5.75 -2.52 -0.01 1.26 16 44 H 0.02 0.87 7.92 -2.00 -0.02 0.85 16 45 H 0.10 2.36 3.20 -1.99 -0.01 2.35 16 46 H 0.07 2.18 8.05 -2.46 -0.02 2.16 16 47 H 0.04 1.65 8.10 -2.44 -0.02 1.63 16 48 H 0.05 2.30 7.46 -2.38 -0.02 2.29 16 49 H 0.09 2.89 7.73 -2.39 -0.02 2.87 16 50 H 0.02 1.31 6.59 -2.39 -0.02 1.29 16 51 H 0.01 0.71 7.99 -2.39 -0.02 0.69 16 Total: -1.00 -76.86 354.17 0.59 -76.27 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.95 Total: 13.81 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 5.54 Total: 17.67 kcal Atomic # 7 Polarization: -120.96 SS G_CDS: -7.88 Total: -128.84 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.05 Total: -29.25 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.03 Total: 50.34 kcal Total: -76.86 0.59 -76.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981428030.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.760 kcal (2) G-P(sol) polarization free energy of solvation -76.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds