Wall clock time and date at job start Fri Apr 10 2020 18:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36593 * 126.58645 * 2 1 4 4 C 1.47525 * 125.76468 * 359.74443 * 3 2 1 5 5 O 1.21595 * 120.00185 * 355.14639 * 4 3 2 6 6 N 1.34778 * 119.99796 * 175.15217 * 4 3 2 7 7 C 1.48209 * 119.97005 * 185.45430 * 6 4 3 8 8 C 1.47610 * 110.04053 * 102.54940 * 7 6 4 9 9 C 1.53802 * 111.84379 * 58.43281 * 8 7 6 10 10 N 1.43462 * 107.95947 * 281.54613 * 9 8 7 11 11 C 1.36936 * 118.93955 * 273.62862 * 10 9 8 12 12 H 1.08004 * 119.99803 * 34.86045 * 11 10 9 13 13 C 1.38813 * 120.00123 * 214.85506 * 11 10 9 14 14 N 1.31618 * 119.99736 * 355.17817 * 13 11 10 15 15 Si 1.86792 * 119.99986 * 175.17150 * 13 11 10 16 16 H 1.48500 * 109.47018 * 60.00649 * 15 13 11 17 17 H 1.48500 * 109.47304 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47745 * 300.00662 * 15 13 11 19 19 C 1.48858 * 122.12029 * 93.60918 * 10 9 8 20 20 C 1.43624 * 119.96721 * 5.72660 * 6 4 3 21 21 N 1.34396 * 108.46017 * 180.02562 * 3 2 1 22 22 N 1.28754 * 109.52784 * 0.02562 * 21 3 2 23 23 N 1.34821 * 126.57589 * 180.02562 * 2 1 3 24 24 C 1.46494 * 126.59406 * 359.97438 * 23 2 1 25 25 C 1.52998 * 109.47357 * 120.00546 * 24 23 2 26 26 C 1.53006 * 109.47186 * 240.00214 * 24 23 2 27 27 H 1.08996 * 109.46976 * 89.97003 * 1 2 3 28 28 H 1.09003 * 109.46862 * 209.97562 * 1 2 3 29 29 H 1.09001 * 109.46397 * 329.96995 * 1 2 3 30 30 H 1.08995 * 109.33125 * 222.77696 * 7 6 4 31 31 H 1.09001 * 109.32957 * 342.24688 * 7 6 4 32 32 H 1.09004 * 109.10391 * 297.76475 * 8 7 6 33 33 H 1.08998 * 108.90834 * 178.98261 * 8 7 6 34 34 H 1.08991 * 109.76359 * 161.92907 * 9 8 7 35 35 H 1.08999 * 109.80139 * 41.18347 * 9 8 7 36 36 H 0.97000 * 119.99881 * 179.97438 * 14 13 11 37 37 H 1.09003 * 109.47900 * 200.66163 * 19 10 9 38 38 H 1.08995 * 109.48762 * 80.63151 * 19 10 9 39 39 H 1.08994 * 108.87369 * 31.42896 * 20 6 4 40 40 H 1.09005 * 108.86790 * 149.86173 * 20 6 4 41 41 H 1.09003 * 109.47645 * 0.02562 * 24 23 2 42 42 H 1.09003 * 109.46862 * 59.99374 * 25 24 23 43 43 H 1.09000 * 109.47460 * 179.97438 * 25 24 23 44 44 H 1.09001 * 109.47216 * 300.00035 * 25 24 23 45 45 H 1.08996 * 109.47123 * 179.97438 * 26 24 23 46 46 H 1.08997 * 109.47184 * 300.00225 * 26 24 23 47 47 H 1.09005 * 109.46817 * 60.00225 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3212 1.0968 0.0000 4 6 1.8739 2.5026 -0.0053 5 8 0.6900 2.7636 -0.0994 6 7 2.7776 3.4976 0.0939 7 6 2.3216 4.9030 0.2103 8 6 2.4341 5.3570 1.6103 9 6 3.8765 5.2481 2.1331 10 7 4.1243 3.8745 2.4648 11 6 3.7797 3.4210 3.7100 12 1 2.9004 3.8098 4.2021 13 6 4.5604 2.4615 4.3399 14 7 5.5765 1.9184 3.7035 15 14 4.1690 1.9412 6.0907 16 1 2.7959 1.3782 6.1445 17 1 5.1443 0.9114 6.5308 18 1 4.2559 3.1205 6.9889 19 6 4.7435 2.9263 1.4987 20 6 4.1816 3.1955 0.0808 21 7 3.5984 0.6787 -0.0006 22 7 3.6299 -0.6085 -0.0015 23 7 2.3104 -1.0827 -0.0005 24 6 1.8863 -2.4849 -0.0006 25 6 2.4286 -3.1817 -1.2500 26 6 2.4294 -3.1821 1.2484 27 1 -0.3633 0.0005 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3632 0.8898 0.5143 30 1 2.9383 5.5364 -0.4272 31 1 1.2829 4.9732 -0.1126 32 1 1.7827 4.7473 2.2365 33 1 2.1118 6.3964 1.6716 34 1 3.9945 5.8688 3.0212 35 1 4.5744 5.5725 1.3613 36 1 6.1222 1.2482 4.1437 37 1 4.5106 1.9031 1.7937 38 1 5.8244 3.0661 1.4940 39 1 4.3467 2.3131 -0.5373 40 1 4.7191 4.0364 -0.3576 41 1 0.7974 -2.5352 -0.0007 42 1 3.5175 -3.1314 -1.2504 43 1 2.1134 -4.2252 -1.2499 44 1 2.0417 -2.6851 -2.1399 45 1 2.1134 -4.2253 1.2486 46 1 3.5182 -3.1319 1.2481 47 1 2.0430 -2.6857 2.1386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000983047095.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:53 Heat of formation + Delta-G solvation = 99.039413 kcal Electronic energy + Delta-G solvation = -29480.233786 eV Core-core repulsion = 25701.738187 eV Total energy + Delta-G solvation = -3778.495598 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.95611 -39.28026 -36.79483 -36.33625 -34.11253 -32.79245 -32.57216 -30.87641 -30.35630 -27.87055 -27.55033 -27.13701 -25.33115 -23.85034 -23.41595 -23.06044 -21.01167 -20.13337 -19.57567 -18.55851 -17.11806 -16.53049 -15.95707 -15.88968 -15.68874 -14.99125 -14.57937 -14.22644 -14.08894 -13.83946 -13.62619 -13.32103 -13.05677 -13.03469 -12.91923 -12.81392 -12.47817 -12.38787 -12.26559 -12.06694 -11.84449 -11.71140 -11.56884 -11.31580 -11.12919 -10.81242 -10.76299 -10.51090 -10.28120 -10.06901 -10.05657 -9.94208 -9.58483 -9.55323 -9.28425 -8.73317 -8.31879 -7.81954 -6.38966 -5.66932 -3.18005 1.47389 2.24160 2.24861 3.41338 3.46196 3.47758 3.56622 3.91257 4.24347 4.46660 4.57193 4.59772 4.69887 4.84315 5.00869 5.21101 5.26496 5.37178 5.45145 5.48300 5.49657 5.55110 5.63142 5.70571 5.76439 5.87480 5.91201 5.95383 5.97015 6.04632 6.08357 6.18184 6.36050 6.46991 6.60638 6.68096 6.72767 6.84706 6.95733 7.11896 7.21084 7.67966 7.87772 7.94883 8.16606 8.40852 8.66252 8.76729 9.38364 10.02737 10.53177 11.39138 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.010881 B = 0.005996 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.699452 B = 4668.428634 C = 6162.447192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.111 3.889 3 C -0.090 4.090 4 C 0.607 3.393 5 O -0.561 6.561 6 N -0.567 5.567 7 C 0.129 3.871 8 C -0.169 4.169 9 C 0.163 3.837 10 N -0.593 5.593 11 C -0.257 4.257 12 H 0.057 0.943 13 C 0.014 3.986 14 N -0.899 5.899 15 Si 0.895 3.105 16 H -0.286 1.286 17 H -0.291 1.291 18 H -0.282 1.282 19 C 0.171 3.829 20 C 0.068 3.932 21 N -0.181 5.181 22 N -0.068 5.068 23 N -0.362 5.362 24 C 0.146 3.854 25 C -0.160 4.160 26 C -0.164 4.164 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.044 0.956 35 H 0.032 0.968 36 H 0.253 0.747 37 H 0.091 0.909 38 H 0.034 0.966 39 H 0.095 0.905 40 H 0.051 0.949 41 H 0.105 0.895 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.177 -7.438 -10.865 15.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.026 4.026 3 C -0.229 4.229 4 C 0.394 3.606 5 O -0.441 6.441 6 N -0.296 5.296 7 C 0.008 3.992 8 C -0.211 4.211 9 C 0.034 3.966 10 N -0.315 5.315 11 C -0.387 4.387 12 H 0.075 0.925 13 C -0.185 4.185 14 N -0.543 5.543 15 Si 0.725 3.275 16 H -0.213 1.213 17 H -0.217 1.217 18 H -0.209 1.209 19 C 0.046 3.954 20 C -0.057 4.057 21 N -0.054 5.054 22 N -0.047 5.047 23 N -0.149 5.149 24 C 0.044 3.956 25 C -0.218 4.218 26 C -0.222 4.222 27 H 0.104 0.896 28 H 0.087 0.913 29 H 0.127 0.873 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.109 0.891 38 H 0.052 0.948 39 H 0.113 0.887 40 H 0.069 0.931 41 H 0.123 0.877 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.124 -7.858 -10.875 15.191 hybrid contribution -1.023 -0.236 1.231 1.618 sum -8.147 -8.094 -9.644 14.996 Atomic orbital electron populations 1.20610 0.85364 1.04888 1.03945 1.21761 0.95883 0.86589 0.98360 1.21139 0.89038 0.95257 1.17475 1.16716 0.85107 0.82656 0.76120 1.90662 1.16318 1.83665 1.53454 1.47166 1.06929 1.06017 1.69491 1.20693 1.00290 0.80601 0.97617 1.21981 1.03039 0.99455 0.96579 1.20281 0.91578 0.87592 0.97113 1.43669 1.72247 1.03586 1.12015 1.19005 1.05473 1.21539 0.92662 0.92511 1.25274 0.95910 0.99993 0.97332 1.69967 1.19335 1.29232 1.35730 0.86503 0.77195 0.77920 0.85907 1.21287 1.21687 1.20877 1.21942 0.94159 0.96021 0.83279 1.22607 0.79693 1.00938 1.02488 1.74785 1.18400 1.03182 1.09033 1.81959 0.95923 1.04089 1.22708 1.50556 1.06582 1.06766 1.50981 1.21525 1.00087 0.75896 0.98048 1.22134 1.03313 1.00511 0.95853 1.22160 1.03506 1.00422 0.96081 0.89585 0.91266 0.87285 0.91998 0.90373 0.91570 0.92755 0.93802 0.94949 0.93697 0.89112 0.94815 0.88717 0.93098 0.87749 0.90653 0.90280 0.91920 0.90319 0.90527 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.10 9.36 36.01 0.34 -0.76 16 2 C 0.11 1.80 7.02 -81.87 -0.57 1.22 16 3 C -0.09 -1.78 6.69 -83.55 -0.56 -2.33 16 4 C 0.61 12.53 7.65 -12.47 -0.10 12.44 16 5 O -0.56 -11.76 14.21 5.28 0.08 -11.69 16 6 N -0.57 -11.37 2.45 -177.64 -0.43 -11.81 16 7 C 0.13 2.30 5.77 -5.70 -0.03 2.26 16 8 C -0.17 -3.21 5.65 -28.92 -0.16 -3.37 16 9 C 0.16 3.50 5.63 -5.23 -0.03 3.47 16 10 N -0.59 -15.18 2.53 -172.00 -0.44 -15.62 16 11 C -0.26 -7.26 9.18 -15.06 -0.14 -7.40 16 12 H 0.06 1.62 7.83 -52.48 -0.41 1.21 16 13 C 0.01 0.40 5.30 -17.43 -0.09 0.31 16 14 N -0.90 -26.57 10.62 55.49 0.59 -25.98 16 15 Si 0.89 22.51 29.56 -169.99 -5.02 17.49 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 18 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 19 C 0.17 4.25 4.94 -1.75 -0.01 4.24 16 20 C 0.07 1.40 4.77 -4.58 -0.02 1.38 16 21 N -0.18 -3.71 7.43 32.85 0.24 -3.46 16 22 N -0.07 -1.26 13.67 60.35 0.82 -0.44 16 23 N -0.36 -5.41 3.28 -50.41 -0.17 -5.57 16 24 C 0.15 1.47 3.68 -67.93 -0.25 1.22 16 25 C -0.16 -1.33 9.47 37.16 0.35 -0.98 16 26 C -0.16 -1.64 9.47 37.16 0.35 -1.29 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 0.64 7.18 -51.93 -0.37 0.27 16 29 H 0.11 1.58 6.56 -51.93 -0.34 1.24 16 30 H 0.06 0.95 8.05 -51.93 -0.42 0.53 16 31 H 0.08 1.36 7.08 -51.93 -0.37 0.99 16 32 H 0.07 1.47 7.91 -51.93 -0.41 1.06 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.04 0.95 8.02 -51.93 -0.42 0.54 16 35 H 0.03 0.65 7.59 -51.93 -0.39 0.25 16 36 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.09 2.52 5.38 -51.93 -0.28 2.25 16 38 H 0.03 0.90 7.95 -51.93 -0.41 0.49 16 39 H 0.10 1.92 5.18 -51.93 -0.27 1.65 16 40 H 0.05 0.94 7.73 -51.93 -0.40 0.54 16 41 H 0.10 0.78 6.79 -51.93 -0.35 0.43 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 366.32 15.07 5.52 5.52 Total: -1.00 -33.67 366.32 -7.10 -40.76 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -7.36 Total: 0.38 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: -0.93 Total: 10.41 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: 0.62 Total: -62.88 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.08 Total: -11.69 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.67 -7.10 -40.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000983047095.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.803 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds