Wall clock time and date at job start Fri Apr 10 2020 18:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36593 * 126.58645 * 2 1 4 4 C 1.47525 * 125.76468 * 359.74443 * 3 2 1 5 5 O 1.21595 * 120.00185 * 355.14639 * 4 3 2 6 6 N 1.34778 * 119.99796 * 175.15217 * 4 3 2 7 7 C 1.48209 * 119.97005 * 185.45430 * 6 4 3 8 8 C 1.47610 * 110.04053 * 102.54940 * 7 6 4 9 9 C 1.53802 * 111.84379 * 58.43281 * 8 7 6 10 10 N 1.43462 * 107.95947 * 281.54613 * 9 8 7 11 11 C 1.36936 * 118.93955 * 273.62862 * 10 9 8 12 12 H 1.08004 * 119.99803 * 34.86045 * 11 10 9 13 13 C 1.38813 * 120.00123 * 214.85506 * 11 10 9 14 14 N 1.31618 * 119.99736 * 355.17817 * 13 11 10 15 15 Si 1.86792 * 119.99986 * 175.17150 * 13 11 10 16 16 H 1.48500 * 109.47018 * 60.00649 * 15 13 11 17 17 H 1.48500 * 109.47304 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47745 * 300.00662 * 15 13 11 19 19 C 1.48858 * 122.12029 * 93.60918 * 10 9 8 20 20 C 1.43624 * 119.96721 * 5.72660 * 6 4 3 21 21 N 1.34396 * 108.46017 * 180.02562 * 3 2 1 22 22 N 1.28754 * 109.52784 * 0.02562 * 21 3 2 23 23 N 1.34821 * 126.57589 * 180.02562 * 2 1 3 24 24 C 1.46494 * 126.59406 * 359.97438 * 23 2 1 25 25 C 1.52998 * 109.47357 * 120.00546 * 24 23 2 26 26 C 1.53006 * 109.47186 * 240.00214 * 24 23 2 27 27 H 1.08996 * 109.46976 * 89.97003 * 1 2 3 28 28 H 1.09003 * 109.46862 * 209.97562 * 1 2 3 29 29 H 1.09001 * 109.46397 * 329.96995 * 1 2 3 30 30 H 1.08995 * 109.33125 * 222.77696 * 7 6 4 31 31 H 1.09001 * 109.32957 * 342.24688 * 7 6 4 32 32 H 1.09004 * 109.10391 * 297.76475 * 8 7 6 33 33 H 1.08998 * 108.90834 * 178.98261 * 8 7 6 34 34 H 1.08991 * 109.76359 * 161.92907 * 9 8 7 35 35 H 1.08999 * 109.80139 * 41.18347 * 9 8 7 36 36 H 0.97000 * 119.99881 * 179.97438 * 14 13 11 37 37 H 1.09003 * 109.47900 * 200.66163 * 19 10 9 38 38 H 1.08995 * 109.48762 * 80.63151 * 19 10 9 39 39 H 1.08994 * 108.87369 * 31.42896 * 20 6 4 40 40 H 1.09005 * 108.86790 * 149.86173 * 20 6 4 41 41 H 1.09003 * 109.47645 * 0.02562 * 24 23 2 42 42 H 1.09003 * 109.46862 * 59.99374 * 25 24 23 43 43 H 1.09000 * 109.47460 * 179.97438 * 25 24 23 44 44 H 1.09001 * 109.47216 * 300.00035 * 25 24 23 45 45 H 1.08996 * 109.47123 * 179.97438 * 26 24 23 46 46 H 1.08997 * 109.47184 * 300.00225 * 26 24 23 47 47 H 1.09005 * 109.46817 * 60.00225 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3212 1.0968 0.0000 4 6 1.8739 2.5026 -0.0053 5 8 0.6900 2.7636 -0.0994 6 7 2.7776 3.4976 0.0939 7 6 2.3216 4.9030 0.2103 8 6 2.4341 5.3570 1.6103 9 6 3.8765 5.2481 2.1331 10 7 4.1243 3.8745 2.4648 11 6 3.7797 3.4210 3.7100 12 1 2.9004 3.8098 4.2021 13 6 4.5604 2.4615 4.3399 14 7 5.5765 1.9184 3.7035 15 14 4.1690 1.9412 6.0907 16 1 2.7959 1.3782 6.1445 17 1 5.1443 0.9114 6.5308 18 1 4.2559 3.1205 6.9889 19 6 4.7435 2.9263 1.4987 20 6 4.1816 3.1955 0.0808 21 7 3.5984 0.6787 -0.0006 22 7 3.6299 -0.6085 -0.0015 23 7 2.3104 -1.0827 -0.0005 24 6 1.8863 -2.4849 -0.0006 25 6 2.4286 -3.1817 -1.2500 26 6 2.4294 -3.1821 1.2484 27 1 -0.3633 0.0005 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3632 0.8898 0.5143 30 1 2.9383 5.5364 -0.4272 31 1 1.2829 4.9732 -0.1126 32 1 1.7827 4.7473 2.2365 33 1 2.1118 6.3964 1.6716 34 1 3.9945 5.8688 3.0212 35 1 4.5744 5.5725 1.3613 36 1 6.1222 1.2482 4.1437 37 1 4.5106 1.9031 1.7937 38 1 5.8244 3.0661 1.4940 39 1 4.3467 2.3131 -0.5373 40 1 4.7191 4.0364 -0.3576 41 1 0.7974 -2.5352 -0.0007 42 1 3.5175 -3.1314 -1.2504 43 1 2.1134 -4.2252 -1.2499 44 1 2.0417 -2.6851 -2.1399 45 1 2.1134 -4.2253 1.2486 46 1 3.5182 -3.1319 1.2481 47 1 2.0430 -2.6857 2.1386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000983047095.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:52 Heat of formation + Delta-G solvation = 77.549510 kcal Electronic energy + Delta-G solvation = -29481.165658 eV Core-core repulsion = 25701.738187 eV Total energy + Delta-G solvation = -3779.427470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.26467 -40.82898 -38.50524 -37.34242 -35.91215 -34.30570 -33.90865 -32.77911 -31.67244 -29.38470 -28.66607 -28.28134 -27.06195 -25.47886 -24.89467 -24.53303 -22.46445 -21.49028 -21.18919 -20.00505 -18.70873 -18.11469 -17.50583 -17.25403 -17.09387 -16.74831 -15.97964 -15.73968 -15.51212 -15.27516 -15.19268 -14.74929 -14.45310 -14.26300 -14.09351 -13.92859 -13.88140 -13.82148 -13.46130 -13.21559 -13.19908 -13.15170 -12.81686 -12.77832 -12.53790 -12.50381 -12.44778 -12.14405 -12.04665 -11.74130 -11.67094 -11.49846 -11.40666 -11.02748 -10.85501 -10.46373 -10.10386 -9.42531 -8.45816 -7.82674 -5.36626 0.22022 0.76962 1.16699 1.37793 1.39902 1.46367 2.08902 2.41213 2.48218 3.26000 3.31080 3.34568 3.58245 3.75492 3.82099 3.87585 3.97428 4.10581 4.17616 4.29703 4.39160 4.49539 4.58854 4.60323 4.62404 4.65274 4.70454 4.73559 4.74826 4.82635 4.85867 4.95679 5.04311 5.11796 5.16902 5.19515 5.26762 5.31815 5.43179 5.52233 5.64153 5.67040 5.87965 5.95935 6.49015 6.52009 7.00213 7.23671 7.25156 7.99816 8.42953 9.19540 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.010881 B = 0.005996 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.699452 B = 4668.428634 C = 6162.447192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.120 3.880 3 C -0.130 4.130 4 C 0.600 3.400 5 O -0.570 6.570 6 N -0.574 5.574 7 C 0.126 3.874 8 C -0.153 4.153 9 C 0.157 3.843 10 N -0.608 5.608 11 C -0.263 4.263 12 H 0.049 0.951 13 C -0.038 4.038 14 N -0.923 5.923 15 Si 0.954 3.046 16 H -0.285 1.285 17 H -0.292 1.292 18 H -0.274 1.274 19 C 0.183 3.817 20 C 0.086 3.914 21 N -0.210 5.210 22 N -0.095 5.095 23 N -0.347 5.347 24 C 0.132 3.868 25 C -0.154 4.154 26 C -0.161 4.161 27 H 0.111 0.889 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.028 0.972 33 H 0.091 0.909 34 H 0.037 0.963 35 H 0.052 0.948 36 H 0.246 0.754 37 H 0.057 0.943 38 H 0.004 0.996 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.143 0.857 42 H 0.053 0.947 43 H 0.115 0.885 44 H 0.063 0.937 45 H 0.118 0.882 46 H 0.050 0.950 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.296 -8.055 -11.775 17.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.019 4.019 3 C -0.270 4.270 4 C 0.387 3.613 5 O -0.451 6.451 6 N -0.302 5.302 7 C 0.005 3.995 8 C -0.194 4.194 9 C 0.030 3.970 10 N -0.331 5.331 11 C -0.394 4.394 12 H 0.067 0.933 13 C -0.234 4.234 14 N -0.568 5.568 15 Si 0.782 3.218 16 H -0.211 1.211 17 H -0.218 1.218 18 H -0.199 1.199 19 C 0.058 3.942 20 C -0.040 4.040 21 N -0.082 5.082 22 N -0.074 5.074 23 N -0.135 5.135 24 C 0.033 3.967 25 C -0.212 4.212 26 C -0.219 4.219 27 H 0.130 0.870 28 H 0.124 0.876 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.047 0.953 33 H 0.109 0.891 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.022 0.978 39 H 0.114 0.886 40 H 0.093 0.907 41 H 0.160 0.840 42 H 0.072 0.928 43 H 0.133 0.867 44 H 0.082 0.918 45 H 0.137 0.863 46 H 0.069 0.931 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.249 -8.465 -11.794 17.213 hybrid contribution -0.435 -0.102 1.511 1.576 sum -9.684 -8.567 -10.283 16.520 Atomic orbital electron populations 1.20746 0.82370 1.05545 1.05714 1.22334 0.97470 0.85905 0.96151 1.21367 0.89688 0.95894 1.20015 1.16984 0.85158 0.83303 0.75813 1.90633 1.16439 1.84032 1.54021 1.47291 1.06502 1.06990 1.69452 1.20885 1.01428 0.79864 0.97291 1.21763 1.00088 1.01040 0.96495 1.20466 0.93585 0.85366 0.97573 1.43879 1.72309 1.05317 1.11566 1.19193 1.05088 1.21367 0.93785 0.93299 1.25927 0.96215 1.00540 1.00701 1.70163 1.20294 1.29674 1.36666 0.85570 0.76731 0.77608 0.81872 1.21143 1.21821 1.19936 1.21598 0.92610 0.94357 0.85685 1.22269 0.80294 1.02076 0.99407 1.74719 1.19385 1.04094 1.10031 1.81833 0.98182 1.03648 1.23752 1.50938 1.05216 1.08370 1.48943 1.22164 1.02337 0.73335 0.98882 1.22126 1.01880 1.02398 0.94757 1.22172 1.01808 1.02638 0.95261 0.87039 0.87609 0.89512 0.88657 0.89750 0.95308 0.89054 0.94443 0.93013 0.94444 0.92436 0.97782 0.88610 0.90722 0.83970 0.92795 0.86683 0.91823 0.86343 0.93068 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.89 9.36 71.24 0.67 -1.23 16 2 C 0.12 3.80 7.02 41.72 0.29 4.09 16 3 C -0.13 -5.20 6.69 40.82 0.27 -4.92 16 4 C 0.60 24.85 7.65 86.69 0.66 25.51 16 5 O -0.57 -23.70 14.21 -4.01 -0.06 -23.76 16 6 N -0.57 -22.77 2.45 -834.19 -2.04 -24.81 16 7 C 0.13 4.22 5.77 84.36 0.49 4.70 16 8 C -0.15 -5.58 5.65 29.18 0.16 -5.42 16 9 C 0.16 6.65 5.63 87.21 0.49 7.14 16 10 N -0.61 -31.72 2.53 -698.08 -1.77 -33.49 16 11 C -0.26 -15.27 9.18 84.03 0.77 -14.50 16 12 H 0.05 2.86 7.83 -2.91 -0.02 2.84 16 13 C -0.04 -2.21 5.30 84.86 0.45 -1.76 16 14 N -0.92 -56.64 10.62 21.65 0.23 -56.41 16 15 Si 0.95 47.31 29.56 68.60 2.03 49.33 16 16 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 17 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 18 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 19 C 0.18 9.41 4.94 86.56 0.43 9.83 16 20 C 0.09 3.52 4.77 87.55 0.42 3.94 16 21 N -0.21 -8.93 7.43 -50.00 -0.37 -9.30 16 22 N -0.10 -3.66 13.67 37.02 0.51 -3.16 16 23 N -0.35 -10.16 3.28 -313.38 -1.03 -11.19 16 24 C 0.13 2.34 3.68 44.99 0.17 2.51 16 25 C -0.15 -2.17 9.47 71.98 0.68 -1.49 16 26 C -0.16 -2.98 9.47 71.98 0.68 -2.29 16 27 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.11 1.54 7.18 -2.39 -0.02 1.53 16 29 H 0.09 2.41 6.56 -2.39 -0.02 2.39 16 30 H 0.10 2.59 8.05 -2.39 -0.02 2.57 16 31 H 0.08 2.76 7.08 -2.39 -0.02 2.75 16 32 H 0.03 1.26 7.91 -2.39 -0.02 1.24 16 33 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.04 1.61 8.02 -2.39 -0.02 1.59 16 35 H 0.05 1.98 7.59 -2.39 -0.02 1.96 16 36 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 37 H 0.06 3.35 5.38 -2.39 -0.01 3.34 16 38 H 0.00 0.23 7.95 -2.39 -0.02 0.21 16 39 H 0.10 3.99 5.18 -2.39 -0.01 3.98 16 40 H 0.07 2.68 7.73 -2.38 -0.02 2.66 16 41 H 0.14 1.49 6.79 -2.39 -0.02 1.48 16 42 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -77.82 366.32 5.10 -72.72 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.97 Total: 13.94 kcal Atomic # 6 Polarization: 19.49 SS G_CDS: 6.63 Total: 26.12 kcal Atomic # 7 Polarization: -133.88 SS G_CDS: -4.47 Total: -138.35 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.06 Total: -23.76 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.33 kcal Total: -77.82 5.10 -72.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000983047095.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.268 kcal (2) G-P(sol) polarization free energy of solvation -77.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds