Wall clock time and date at job start Fri Apr 10 2020 18:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47368 * 2 1 4 4 N 1.28716 * 126.03150 * 275.12405 * 3 2 1 5 5 N 1.28517 * 110.63438 * 180.02562 * 4 3 2 6 6 C 1.33319 * 109.43923 * 359.72340 * 5 4 3 7 7 C 1.50697 * 126.81281 * 180.27720 * 6 5 4 8 8 C 1.37005 * 106.37056 * 0.43231 * 6 5 4 9 9 C 1.47237 * 127.18804 * 179.84737 * 8 6 5 10 10 O 1.21623 * 119.99883 * 86.26580 * 9 8 6 11 11 N 1.34778 * 119.99845 * 266.27230 * 9 8 6 12 12 C 1.46506 * 119.99798 * 174.98596 * 11 9 8 13 13 H 1.08996 * 109.49574 * 325.06582 * 12 11 9 14 14 C 1.53042 * 109.52124 * 85.14486 * 12 11 9 15 15 C 1.53039 * 109.53767 * 181.33252 * 14 12 11 16 16 C 1.53624 * 109.23926 * 298.51450 * 15 14 12 17 17 N 1.46925 * 108.54883 * 54.85536 * 16 15 14 18 18 C 1.36931 * 120.63089 * 126.37033 * 17 16 15 19 19 H 1.08002 * 119.99629 * 206.47165 * 18 17 16 20 20 C 1.38806 * 120.00513 * 26.46652 * 18 17 16 21 21 N 1.31618 * 120.00414 * 211.45575 * 20 18 17 22 22 Si 1.86805 * 119.99465 * 31.45751 * 20 18 17 23 23 H 1.48502 * 109.47042 * 269.99701 * 22 20 18 24 24 H 1.48502 * 109.46831 * 149.99850 * 22 20 18 25 25 H 1.48498 * 109.47258 * 30.00134 * 22 20 18 26 26 C 1.46928 * 118.73397 * 306.09241 * 17 16 15 27 27 H 1.08994 * 109.59235 * 293.93030 * 26 17 16 28 28 C 1.53001 * 109.58456 * 173.64367 * 26 17 16 29 29 H 1.09003 * 109.47095 * 300.00586 * 1 2 3 30 30 H 1.08998 * 109.46734 * 59.99858 * 1 2 3 31 31 H 1.08992 * 109.47507 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46616 * 239.99504 * 2 1 3 33 33 H 1.08998 * 109.46734 * 120.00142 * 2 1 3 34 34 H 1.09006 * 109.47440 * 270.17979 * 7 6 5 35 35 H 1.09000 * 109.47286 * 30.18092 * 7 6 5 36 36 H 1.08996 * 109.47011 * 150.18450 * 7 6 5 37 37 H 0.96995 * 120.00343 * 354.98421 * 11 9 8 38 38 H 1.09000 * 109.45811 * 301.35166 * 14 12 11 39 39 H 1.08996 * 109.46139 * 61.30980 * 14 12 11 40 40 H 1.08998 * 109.49596 * 58.58406 * 15 14 12 41 41 H 1.08997 * 109.50158 * 178.68554 * 15 14 12 42 42 H 1.09002 * 109.73914 * 295.11281 * 16 15 14 43 43 H 1.09008 * 109.66484 * 174.55242 * 16 15 14 44 44 H 0.97000 * 119.99631 * 354.94024 * 21 20 18 45 45 H 1.09000 * 109.46753 * 60.00191 * 28 26 17 46 46 H 1.09004 * 109.47046 * 180.02562 * 28 26 17 47 47 H 1.08994 * 109.47385 * 300.00538 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1832 2.1260 -1.0368 5 7 2.6255 3.2838 -0.6969 6 6 2.7635 3.3347 0.6281 7 6 3.2477 4.5075 1.4412 8 6 2.3810 2.1081 1.1036 9 6 2.3582 1.6654 2.5076 10 8 1.3833 1.8882 3.1997 11 7 3.4179 1.0135 3.0259 12 6 3.4418 0.6701 4.4500 13 1 2.9491 1.4563 5.0220 14 6 2.7097 -0.6559 4.6687 15 6 2.7056 -0.9984 6.1602 16 6 4.1538 -1.1599 6.6466 17 7 4.8988 0.0610 6.3102 18 6 5.5893 0.7450 7.2747 19 1 5.7659 1.8046 7.1634 20 6 6.0622 0.0766 8.3956 21 7 6.1513 0.7057 9.5482 22 14 6.5722 -1.7159 8.2680 23 1 5.4015 -2.5849 8.5503 24 1 7.6461 -1.9964 9.2546 25 1 7.0744 -1.9914 6.8980 26 6 4.8938 0.5305 4.9179 27 1 5.4154 -0.1896 4.2875 28 6 5.5931 1.8886 4.8322 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.3313 4.4538 1.5469 35 1 2.9774 5.4354 0.9372 36 1 2.7848 4.4816 2.4276 37 1 4.1647 0.7716 2.4562 38 1 1.6830 -0.5667 4.3137 39 1 3.2174 -1.4464 4.1160 40 1 2.2199 -0.1965 6.7162 41 1 2.1639 -1.9310 6.3180 42 1 4.6142 -2.0164 6.1539 43 1 4.1638 -1.3083 7.7265 44 1 5.9567 1.6547 9.5991 45 1 6.6222 1.7897 5.1775 46 1 5.5879 2.2353 3.7988 47 1 5.0671 2.6084 5.4592 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993434018.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:08 Heat of formation + Delta-G solvation = 76.337353 kcal Electronic energy + Delta-G solvation = -28550.455739 eV Core-core repulsion = 24770.975706 eV Total energy + Delta-G solvation = -3779.480033 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.48605 -39.94039 -37.95342 -35.96342 -34.64030 -33.08999 -32.73073 -31.85325 -31.22102 -29.93804 -28.03883 -26.50735 -25.14042 -24.76645 -23.75986 -22.01935 -21.41476 -20.91180 -20.44298 -19.69274 -18.15214 -17.12334 -16.89571 -16.68250 -15.99363 -15.23832 -14.97135 -14.75640 -14.67750 -14.22373 -13.99789 -13.78756 -13.60944 -13.45753 -13.34384 -12.99428 -12.80667 -12.66320 -12.49333 -12.14288 -12.11201 -11.93576 -11.69917 -11.55788 -11.36708 -11.15850 -10.96759 -10.63104 -10.52690 -10.39906 -10.36462 -10.24232 -9.97822 -9.68668 -9.36093 -9.28444 -9.05328 -8.37031 -7.18683 -6.34463 -3.33039 1.05138 1.68235 2.20578 2.37817 2.98740 3.36962 3.49778 3.64974 3.96312 4.18308 4.35578 4.45641 4.53142 4.62654 4.68470 4.85036 5.01678 5.07533 5.10551 5.21310 5.30920 5.36586 5.44138 5.44919 5.53807 5.59357 5.60708 5.69411 5.75200 5.91295 6.00561 6.05575 6.11719 6.16863 6.17933 6.26681 6.35218 6.37007 6.41595 6.68255 6.71211 6.83759 6.92593 7.31285 7.91248 7.99570 8.18533 8.37644 8.98583 9.56432 10.14275 11.03837 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.020620 B = 0.003542 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.560603 B = 7903.798529 C = 8624.066425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.108 3.892 3 N -0.269 5.269 4 N -0.066 5.066 5 N -0.269 5.269 6 C 0.029 3.971 7 C -0.074 4.074 8 C -0.061 4.061 9 C 0.593 3.407 10 O -0.514 6.514 11 N -0.702 5.702 12 C 0.130 3.870 13 H 0.092 0.908 14 C -0.119 4.119 15 C -0.132 4.132 16 C 0.130 3.870 17 N -0.591 5.591 18 C -0.357 4.357 19 H 0.074 0.926 20 C -0.007 4.007 21 N -0.906 5.906 22 Si 1.049 2.951 23 H -0.292 1.292 24 H -0.297 1.297 25 H -0.288 1.288 26 C 0.167 3.833 27 H 0.030 0.970 28 C -0.135 4.135 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.400 0.600 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.023 0.977 43 H 0.077 0.923 44 H 0.265 0.735 45 H 0.065 0.935 46 H 0.040 0.960 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.594 -2.161 -17.976 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.013 4.013 3 N -0.067 5.067 4 N -0.045 5.045 5 N -0.134 5.134 6 C -0.111 4.111 7 C -0.133 4.133 8 C -0.196 4.196 9 C 0.374 3.626 10 O -0.387 6.387 11 N -0.352 5.352 12 C 0.025 3.975 13 H 0.110 0.890 14 C -0.157 4.157 15 C -0.172 4.172 16 C 0.005 3.995 17 N -0.316 5.316 18 C -0.485 4.485 19 H 0.091 0.909 20 C -0.210 4.210 21 N -0.544 5.544 22 Si 0.880 3.120 23 H -0.220 1.220 24 H -0.224 1.224 25 H -0.214 1.214 26 C 0.059 3.941 27 H 0.048 0.952 28 C -0.193 4.193 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.130 0.870 33 H 0.122 0.878 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.234 0.766 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.041 0.959 43 H 0.095 0.905 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.058 0.942 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.850 -3.207 -18.066 19.957 hybrid contribution -0.195 0.834 -0.203 0.880 sum -8.046 -2.373 -18.269 20.103 Atomic orbital electron populations 1.22172 0.92431 1.04203 1.04093 1.22235 0.97039 0.76016 1.06004 1.47825 1.41672 1.13347 1.03808 1.78152 1.16615 0.98104 1.11657 1.74828 1.15729 1.10994 1.11892 1.22161 1.02800 0.95017 0.91105 1.20203 1.01742 0.93248 0.98118 1.21990 1.12194 0.94975 0.90400 1.16782 0.83657 0.78365 0.83815 1.90874 1.32680 1.54893 1.60272 1.46156 1.20302 1.56791 1.11966 1.21926 0.99958 0.97527 0.78102 0.88973 1.21779 0.99675 0.96566 0.97711 1.22081 0.99436 1.00938 0.94742 1.21421 0.89579 0.88547 0.99986 1.44382 1.56100 1.28357 1.02727 1.20113 1.34597 0.92986 1.00835 0.90860 1.26059 0.97089 1.06039 0.91820 1.70932 1.49524 1.11346 1.22611 0.83975 0.76715 0.76165 0.75131 1.22032 1.22430 1.21419 1.20589 0.90342 0.95260 0.87909 0.95243 1.21808 1.01812 0.96559 0.99110 0.91093 0.91051 0.89390 0.86977 0.87761 0.89881 0.89851 0.90229 0.76622 0.92553 0.92520 0.91550 0.92390 0.95939 0.90483 0.92416 0.91566 0.94153 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.24 37.16 0.38 -0.82 16 2 C 0.11 0.81 6.99 -4.04 -0.03 0.78 16 3 N -0.27 -3.04 3.39 -57.37 -0.19 -3.24 16 4 N -0.07 -0.88 13.14 60.35 0.79 -0.08 16 5 N -0.27 -3.81 12.35 33.51 0.41 -3.40 16 6 C 0.03 0.37 7.30 -82.40 -0.60 -0.23 16 7 C -0.07 -0.78 10.28 36.00 0.37 -0.41 16 8 C -0.06 -0.78 6.74 -82.34 -0.55 -1.33 16 9 C 0.59 8.10 6.80 -12.60 -0.09 8.01 16 10 O -0.51 -8.82 16.79 5.26 0.09 -8.73 16 11 N -0.70 -8.78 4.58 -54.82 -0.25 -9.03 16 12 C 0.13 2.03 1.96 -67.81 -0.13 1.89 16 13 H 0.09 1.71 7.65 -51.93 -0.40 1.31 16 14 C -0.12 -1.77 5.46 -26.69 -0.15 -1.91 16 15 C -0.13 -2.23 6.10 -26.39 -0.16 -2.39 16 16 C 0.13 2.64 4.36 -3.49 -0.02 2.63 16 17 N -0.59 -12.99 2.74 -164.51 -0.45 -13.44 16 18 C -0.36 -9.27 8.84 -15.06 -0.13 -9.40 16 19 H 0.07 2.01 6.32 -52.49 -0.33 1.68 16 20 C -0.01 -0.18 4.97 -17.43 -0.09 -0.27 16 21 N -0.91 -26.80 13.70 55.49 0.76 -26.04 16 22 Si 1.05 24.92 25.45 -169.99 -4.33 20.60 16 23 H -0.29 -6.54 6.58 56.52 0.37 -6.17 16 24 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.17 2.96 3.03 -67.60 -0.20 2.75 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 C -0.14 -2.31 7.81 37.16 0.29 -2.02 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.70 7.75 -51.93 -0.40 0.30 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.87 8.02 -51.93 -0.42 0.45 16 37 H 0.40 4.15 8.59 -40.82 -0.35 3.80 16 38 H 0.06 0.82 8.11 -51.93 -0.42 0.40 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.02 0.44 7.56 -51.93 -0.39 0.05 16 43 H 0.08 1.74 5.09 -51.92 -0.26 1.47 16 44 H 0.27 7.81 8.73 -40.82 -0.36 7.45 16 45 H 0.07 1.24 7.59 -51.93 -0.39 0.84 16 46 H 0.04 0.55 7.80 -51.93 -0.41 0.15 16 47 H 0.06 1.07 7.46 -51.93 -0.39 0.69 16 LS Contribution 375.90 15.07 5.66 5.66 Total: -1.00 -32.03 375.90 -6.18 -38.22 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.57 Total: 2.21 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -1.11 Total: -2.73 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 1.07 Total: -55.23 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.09 Total: -8.73 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -4.33 Total: 20.60 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.03 -6.18 -38.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993434018.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.552 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds