Wall clock time and date at job start Fri Apr 10 2020 18:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47391 * 2 1 4 4 C 1.52996 * 109.47648 * 239.99362 * 2 1 3 5 5 N 1.46509 * 109.47032 * 119.99203 * 2 1 3 6 6 C 1.34808 * 126.58867 * 74.99723 * 5 2 1 7 7 C 1.36599 * 106.83938 * 180.02562 * 6 5 2 8 8 C 1.47524 * 125.77417 * 180.02562 * 7 6 5 9 9 O 1.21594 * 119.99706 * 7.31934 * 8 7 6 10 10 N 1.34772 * 120.00083 * 187.31768 * 8 7 6 11 11 C 1.46921 * 120.63296 * 7.08364 * 10 8 7 12 12 C 1.53627 * 108.54389 * 126.36511 * 11 10 8 13 13 C 1.53047 * 109.23860 * 54.86103 * 12 11 10 14 14 N 1.46498 * 109.46086 * 178.48726 * 13 12 11 15 15 C 1.36935 * 120.00097 * 275.07085 * 14 13 12 16 16 H 1.07995 * 119.99894 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99789 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00128 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99659 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47655 * 59.99679 * 19 17 15 21 21 H 1.48505 * 109.47145 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.46965 * 299.99198 * 19 17 15 23 23 C 1.53037 * 109.53748 * 298.51262 * 13 12 11 24 24 C 1.46930 * 120.63181 * 187.36724 * 10 8 7 25 25 N 1.34396 * 108.45709 * 0.02562 * 7 6 5 26 26 N 1.28764 * 109.52540 * 359.97438 * 25 7 6 27 27 H 1.08993 * 109.47282 * 300.00866 * 1 2 3 28 28 H 1.09001 * 109.46299 * 60.00766 * 1 2 3 29 29 H 1.08996 * 109.47218 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47179 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46528 * 299.99433 * 3 2 1 32 32 H 1.08997 * 109.47302 * 59.98971 * 3 2 1 33 33 H 1.09003 * 109.47321 * 300.00472 * 4 2 1 34 34 H 1.09002 * 109.47098 * 60.00060 * 4 2 1 35 35 H 1.09003 * 109.47702 * 180.02562 * 4 2 1 36 36 H 1.08008 * 126.58622 * 0.06338 * 6 5 2 37 37 H 1.08993 * 109.59220 * 246.20365 * 11 10 8 38 38 H 1.09005 * 109.58512 * 6.63346 * 11 10 8 39 39 H 1.08993 * 109.63734 * 294.87087 * 12 11 10 40 40 H 1.08997 * 109.43222 * 174.72722 * 12 11 10 41 41 H 1.09005 * 109.44822 * 58.52003 * 13 12 11 42 42 H 0.97002 * 119.99947 * 95.06577 * 14 13 12 43 43 H 0.97001 * 119.99427 * 180.02562 * 18 17 15 44 44 H 1.09006 * 109.49367 * 301.41111 * 23 13 12 45 45 H 1.08997 * 109.49671 * 181.32148 * 23 13 12 46 46 H 1.09001 * 109.58103 * 353.37146 * 24 10 8 47 47 H 1.09001 * 109.58870 * 113.65307 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0183 -0.6905 1.1963 6 6 2.0220 -2.0214 1.4107 7 6 2.5626 -2.2212 2.6492 8 6 2.7645 -3.5290 3.3013 9 8 2.5633 -4.5552 2.6808 10 7 3.1719 -3.5864 4.5847 11 6 3.2703 -2.3642 5.3942 12 6 2.4605 -2.5659 6.6840 13 6 2.9495 -3.8306 7.3938 14 7 2.2050 -4.0080 8.6430 15 6 2.6151 -3.3669 9.7814 16 1 3.4876 -2.7309 9.7584 17 6 1.9099 -3.5354 10.9651 18 7 0.8468 -4.3109 10.9932 19 14 2.4689 -2.6603 12.5179 20 1 2.4482 -1.1924 12.2938 21 1 1.5535 -3.0028 13.6360 22 1 3.8491 -3.0897 12.8584 23 6 2.7246 -5.0445 6.4894 24 6 3.5319 -4.8715 5.1991 25 7 2.8796 -1.0249 3.1731 26 7 2.5708 -0.0941 2.3387 27 1 -0.3633 0.5139 0.8898 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6768 -1.7490 -1.2491 34 1 1.6768 -0.2076 -2.1392 35 1 3.1301 -0.7217 -1.2489 36 1 1.6663 -2.7836 0.7332 37 1 4.3145 -2.1726 5.6412 38 1 2.8645 -1.5215 4.8344 39 1 1.4035 -2.6713 6.4401 40 1 2.5995 -1.7050 7.3378 41 1 4.0125 -3.7347 7.6151 42 1 1.4214 -4.5794 8.6637 43 1 0.3539 -4.4283 11.8203 44 1 1.6649 -5.1265 6.2474 45 1 3.0514 -5.9477 7.0048 46 1 3.2988 -5.6837 4.5105 47 1 4.5975 -4.8813 5.4282 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996659394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:15 Heat of formation + Delta-G solvation = 57.459954 kcal Electronic energy + Delta-G solvation = -27465.311632 eV Core-core repulsion = 23685.013013 eV Total energy + Delta-G solvation = -3780.298619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.38541 -40.95446 -38.70634 -38.30703 -36.15598 -33.93219 -33.05448 -32.51123 -31.45249 -30.85516 -28.46707 -28.41532 -26.78461 -25.18418 -24.92572 -24.06494 -23.28155 -21.80917 -21.31290 -20.12917 -19.07156 -18.20253 -17.65265 -17.18049 -16.99024 -16.68496 -16.07622 -15.86911 -15.49390 -15.35484 -15.23515 -15.00424 -14.96999 -14.69248 -14.45967 -13.81338 -13.65567 -13.43446 -13.37892 -13.24719 -13.17303 -13.12689 -12.80011 -12.77073 -12.72985 -12.45514 -12.30123 -12.21508 -12.08747 -12.00850 -11.81775 -11.55394 -11.30615 -11.27594 -11.12883 -10.73386 -10.38016 -9.66238 -8.99206 -7.92363 -5.21064 0.14905 0.57516 1.03813 1.47774 1.50966 1.56749 1.93171 2.18581 2.57598 3.08082 3.23463 3.40757 3.59524 3.65657 3.77507 3.83036 3.90140 3.93540 4.16534 4.17498 4.19663 4.32168 4.41333 4.50836 4.58048 4.60658 4.64183 4.68183 4.71313 4.80074 4.80802 4.83844 4.89208 5.03175 5.04299 5.08354 5.17848 5.19979 5.28586 5.34264 5.49209 5.53882 5.55000 5.66861 6.29040 6.32159 6.83116 7.08393 7.35143 8.10794 8.34656 9.31189 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.020492 B = 0.002651 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.076779 B =10559.715535 C =11338.384715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.158 3.842 3 C -0.148 4.148 4 C -0.160 4.160 5 N -0.336 5.336 6 C 0.109 3.891 7 C -0.121 4.121 8 C 0.601 3.399 9 O -0.570 6.570 10 N -0.594 5.594 11 C 0.099 3.901 12 C -0.136 4.136 13 C 0.173 3.827 14 N -0.738 5.738 15 C -0.236 4.236 16 H 0.077 0.923 17 C -0.079 4.079 18 N -0.972 5.972 19 Si 0.972 3.028 20 H -0.279 1.279 21 H -0.297 1.297 22 H -0.277 1.277 23 C -0.126 4.126 24 C 0.122 3.878 25 N -0.225 5.225 26 N -0.085 5.085 27 H 0.052 0.948 28 H 0.114 0.886 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.110 0.890 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.061 0.939 36 H 0.230 0.770 37 H 0.076 0.924 38 H 0.125 0.875 39 H 0.039 0.961 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.370 0.630 43 H 0.250 0.750 44 H 0.050 0.950 45 H 0.078 0.922 46 H 0.094 0.906 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.268 9.280 -30.679 32.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.078 3.922 3 C -0.205 4.205 4 C -0.218 4.218 5 N -0.122 5.122 6 C -0.050 4.050 7 C -0.261 4.261 8 C 0.389 3.611 9 O -0.450 6.450 10 N -0.324 5.324 11 C -0.025 4.025 12 C -0.177 4.177 13 C 0.065 3.935 14 N -0.377 5.377 15 C -0.368 4.368 16 H 0.095 0.905 17 C -0.271 4.271 18 N -0.623 5.623 19 Si 0.801 3.199 20 H -0.205 1.205 21 H -0.224 1.224 22 H -0.203 1.203 23 C -0.165 4.165 24 C 0.000 4.000 25 N -0.097 5.097 26 N -0.063 5.063 27 H 0.071 0.929 28 H 0.132 0.868 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.129 0.871 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.133 0.867 35 H 0.080 0.920 36 H 0.246 0.754 37 H 0.094 0.906 38 H 0.142 0.858 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.202 0.798 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.097 0.903 46 H 0.112 0.888 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.663 10.225 -30.248 32.041 hybrid contribution -0.600 -0.739 1.111 1.463 sum 2.062 9.487 -29.137 30.712 Atomic orbital electron populations 1.22323 0.90627 1.04124 1.04670 1.21612 0.96104 0.94383 0.80115 1.22025 1.01879 0.92088 1.04540 1.22341 1.02171 1.01855 0.95395 1.51184 1.40510 1.05066 1.15482 1.23599 0.96650 0.87728 0.96975 1.21406 1.14819 0.92952 0.96901 1.17050 0.76253 0.86448 0.81365 1.90742 1.54098 1.35116 1.64999 1.48001 1.64351 1.09583 1.10513 1.22555 1.01123 0.87254 0.91554 1.22508 0.98906 1.00198 0.96083 1.20428 0.95001 0.92958 0.85114 1.42648 1.33002 1.56418 1.05590 1.19599 1.08333 1.20662 0.88215 0.90506 1.25564 0.98454 1.01903 1.01142 1.69824 1.21393 1.43979 1.27123 0.85226 0.77227 0.78299 0.79120 1.20493 1.22362 1.20258 1.22046 1.00127 0.98893 0.95457 1.21649 0.99454 0.85236 0.93662 1.74409 1.14658 0.98500 1.22159 1.81912 1.16164 1.17585 0.90676 0.92907 0.86754 0.91065 0.92263 0.87144 0.92235 0.90364 0.86689 0.91981 0.75375 0.90563 0.85755 0.94258 0.92190 0.93217 0.79809 0.94146 0.93133 0.90322 0.88767 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 8.74 71.98 0.63 -0.42 16 2 C 0.16 1.42 1.25 3.60 0.00 1.43 16 3 C -0.15 -1.26 8.11 71.98 0.58 -0.67 16 4 C -0.16 -0.65 8.30 71.98 0.60 -0.05 16 5 N -0.34 -5.85 3.44 -306.88 -1.06 -6.91 16 6 C 0.11 2.05 10.44 83.85 0.88 2.93 16 7 C -0.12 -3.24 6.69 40.82 0.27 -2.96 16 8 C 0.60 18.54 7.67 86.69 0.67 19.20 16 9 O -0.57 -19.21 16.30 -4.01 -0.07 -19.27 16 10 N -0.59 -18.36 2.97 -821.84 -2.44 -20.80 16 11 C 0.10 3.09 6.11 86.51 0.53 3.62 16 12 C -0.14 -5.15 5.68 30.82 0.17 -4.98 16 13 C 0.17 7.05 2.73 45.02 0.12 7.18 16 14 N -0.74 -38.26 5.12 -322.81 -1.65 -39.91 16 15 C -0.24 -13.33 9.93 84.03 0.83 -12.49 16 16 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 17 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 18 N -0.97 -60.89 13.06 21.65 0.28 -60.60 16 19 Si 0.97 47.01 29.55 68.60 2.03 49.03 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 21 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 C -0.13 -4.39 5.55 30.67 0.17 -4.22 16 24 C 0.12 3.60 6.44 86.36 0.56 4.16 16 25 N -0.22 -6.34 8.79 -49.99 -0.44 -6.78 16 26 N -0.08 -2.10 12.91 37.02 0.48 -1.62 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.06 0.72 8.06 -2.39 -0.02 0.70 16 33 H 0.08 0.23 7.44 -2.39 -0.02 0.22 16 34 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.23 2.76 7.63 -2.91 -0.02 2.74 16 37 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.13 3.92 4.12 -36.22 -0.15 3.77 16 39 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.05 2.01 8.08 -2.38 -0.02 1.99 16 42 H 0.37 20.82 7.80 -92.71 -0.72 20.10 16 43 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 44 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 45 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 46 H 0.09 2.73 7.00 -2.39 -0.02 2.71 16 47 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -74.31 378.71 3.73 -70.59 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.11 Total: 27.71 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 6.48 Total: 8.57 kcal Atomic # 7 Polarization: -131.80 SS G_CDS: -4.83 Total: -136.62 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.07 Total: -19.27 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.03 kcal Total: -74.31 3.73 -70.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996659394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.047 kcal (2) G-P(sol) polarization free energy of solvation -74.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds