Wall clock time and date at job start Fri Apr 10 2020 18:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46896 * 110.99992 * 2 1 4 4 C 1.46904 * 110.99632 * 123.95315 * 2 1 3 5 5 C 1.52999 * 109.47095 * 66.04505 * 4 2 1 6 6 N 1.46493 * 109.46965 * 179.97438 * 5 4 2 7 7 C 1.35044 * 124.88256 * 124.99939 * 6 5 4 8 8 C 1.35369 * 107.22584 * 179.72592 * 7 6 5 9 9 C 1.41501 * 105.50225 * 0.38474 * 8 7 6 10 10 C 1.47716 * 126.51241 * 179.87604 * 9 8 7 11 11 O 1.21566 * 120.00487 * 359.43816 * 10 9 8 12 12 N 1.34777 * 119.99741 * 179.70758 * 10 9 8 13 13 C 1.46496 * 120.00266 * 179.97438 * 12 10 9 14 14 H 1.08995 * 110.88519 * 328.89015 * 13 12 10 15 15 C 1.55156 * 111.01015 * 205.00008 * 13 12 10 16 16 C 1.54317 * 102.94345 * 277.43131 * 15 13 12 17 17 N 1.47016 * 107.27469 * 337.80553 * 16 15 13 18 18 C 1.36932 * 125.65331 * 178.89747 * 17 16 15 19 19 H 1.07999 * 120.00500 * 180.02562 * 18 17 16 20 20 C 1.38817 * 119.99927 * 0.02562 * 18 17 16 21 21 N 1.31622 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00212 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46809 * 89.99771 * 22 20 18 24 24 H 1.48501 * 109.47012 * 209.99876 * 22 20 18 25 25 H 1.48506 * 109.47057 * 329.99912 * 22 20 18 26 26 C 1.47425 * 108.70227 * 358.93983 * 17 16 15 27 27 N 1.28472 * 124.88819 * 304.97919 * 6 5 4 28 28 H 1.09003 * 109.46990 * 296.05280 * 1 2 3 29 29 H 1.08998 * 109.46787 * 56.04312 * 1 2 3 30 30 H 1.08998 * 109.47276 * 176.04458 * 1 2 3 31 31 H 1.09005 * 109.47384 * 183.95184 * 3 2 1 32 32 H 1.08998 * 109.47400 * 303.95397 * 3 2 1 33 33 H 1.08999 * 109.47481 * 63.95175 * 3 2 1 34 34 H 1.08993 * 109.46869 * 306.04426 * 4 2 1 35 35 H 1.08997 * 109.46793 * 186.04593 * 4 2 1 36 36 H 1.08998 * 109.46931 * 59.99604 * 5 4 2 37 37 H 1.08992 * 109.47120 * 300.00130 * 5 4 2 38 38 H 1.07991 * 126.38579 * 0.02562 * 7 6 5 39 39 H 1.07996 * 127.24448 * 180.25983 * 8 7 6 40 40 H 0.96999 * 120.00043 * 0.02562 * 12 10 9 41 41 H 1.09004 * 110.71534 * 35.79308 * 15 13 12 42 42 H 1.09002 * 110.71779 * 159.06396 * 15 13 12 43 43 H 1.09007 * 109.88253 * 97.22409 * 16 15 13 44 44 H 1.09004 * 109.87910 * 218.38483 * 16 15 13 45 45 H 0.97004 * 119.99700 * 180.02562 * 21 20 18 46 46 H 1.09003 * 110.36846 * 265.29404 * 26 17 16 47 47 H 1.09000 * 110.36703 * 142.96904 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6314 -2.2426 0.9704 6 7 2.1568 -3.0065 2.1046 7 6 1.4189 -3.8030 2.9076 8 6 2.2588 -4.3345 3.8265 9 6 3.5343 -3.8000 3.5270 10 6 4.7937 -4.0742 4.2485 11 8 4.7940 -4.8185 5.2097 12 7 5.9416 -3.4949 3.8446 13 6 7.1906 -3.7663 4.5604 14 1 6.9997 -3.9561 5.6166 15 6 8.2005 -2.6026 4.3781 16 6 8.8472 -2.9169 3.0127 17 7 8.6613 -4.3536 2.7620 18 6 9.0738 -5.0287 1.6443 19 1 8.8886 -6.0889 1.5546 20 6 9.7301 -4.3503 0.6264 21 7 9.9563 -3.0583 0.7359 22 14 10.2934 -5.2713 -0.8980 23 1 9.2134 -5.2491 -1.9170 24 1 11.5081 -4.6190 -1.4497 25 1 10.6065 -6.6779 -0.5391 26 6 7.9564 -4.9470 3.9128 27 7 3.3860 -3.0155 2.4782 28 1 -0.3633 0.4514 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0829 1.3432 -0.0708 32 1 1.5899 1.9163 -0.8524 33 1 1.7045 1.8724 0.9232 34 1 1.5611 -0.3872 2.0627 35 1 3.0797 -0.6611 1.1757 36 1 2.0657 -2.6213 0.0452 37 1 0.5472 -2.3474 0.9323 38 1 0.3575 -3.9859 2.8281 39 1 2.0078 -5.0204 4.6221 40 1 5.9407 -2.8977 3.0802 41 1 7.6827 -1.6439 4.3480 42 1 8.9485 -2.6134 5.1708 43 1 8.3587 -2.3377 2.2290 44 1 9.9108 -2.6804 3.0431 45 1 10.4146 -2.5842 0.0245 46 1 8.6714 -5.3685 4.6194 47 1 7.2580 -5.7130 3.5760 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014471958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:55 Heat of formation + Delta-G solvation = 60.666269 kcal Electronic energy + Delta-G solvation = -27265.797297 eV Core-core repulsion = 23485.637715 eV Total energy + Delta-G solvation = -3780.159583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.63499 -40.74284 -38.86168 -38.62192 -35.42321 -34.66222 -33.60079 -31.72558 -31.04142 -30.27031 -28.95166 -28.52074 -26.68788 -25.97864 -24.08106 -22.47604 -22.23436 -21.95485 -21.49175 -20.88604 -19.11078 -18.66839 -17.81613 -17.31345 -17.13707 -16.65148 -16.50238 -16.14892 -15.80577 -15.71153 -15.40057 -15.26111 -14.99033 -14.65160 -14.29336 -14.02277 -13.99432 -13.80107 -13.56726 -13.38438 -13.02855 -12.90703 -12.80162 -12.67992 -12.57206 -12.31264 -12.20093 -12.12325 -12.02337 -11.83254 -11.76855 -11.59338 -11.19205 -10.72253 -10.32483 -10.11344 -9.95569 -9.45616 -8.85975 -7.84674 -5.18907 0.54651 1.22114 1.44477 1.44856 1.46153 1.54914 2.21128 2.41338 2.49262 2.93924 3.33798 3.35683 3.67293 3.69336 3.80563 3.84766 3.98489 4.07475 4.11334 4.23308 4.26644 4.31436 4.44445 4.58747 4.61471 4.66924 4.73360 4.73813 4.77540 4.79175 4.81396 4.89690 4.98518 4.98711 5.02368 5.03519 5.35091 5.43638 5.55544 5.66939 5.76045 5.82372 5.90579 6.00289 6.19929 6.48231 6.91953 7.11745 7.18706 7.77248 8.41843 9.25431 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.009857 B = 0.003552 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.066451 B = 7881.477929 C = 9402.630351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.556 5.556 3 C 0.024 3.976 4 C 0.049 3.951 5 C 0.122 3.878 6 N -0.278 5.278 7 C 0.005 3.995 8 C -0.199 4.199 9 C -0.044 4.044 10 C 0.600 3.400 11 O -0.572 6.572 12 N -0.691 5.691 13 C 0.138 3.862 14 H 0.109 0.891 15 C -0.133 4.133 16 C 0.185 3.815 17 N -0.621 5.621 18 C -0.242 4.242 19 H 0.073 0.927 20 C -0.060 4.060 21 N -0.946 5.946 22 Si 0.975 3.025 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.273 1.273 26 C 0.122 3.878 27 N -0.279 5.279 28 H 0.032 0.968 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.030 0.970 34 H 0.042 0.958 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.144 0.856 38 H 0.232 0.768 39 H 0.168 0.832 40 H 0.407 0.593 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.015 0.985 44 H 0.012 0.988 45 H 0.247 0.753 46 H 0.039 0.961 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.134 7.600 1.786 25.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.281 5.281 3 C -0.124 4.124 4 C -0.080 4.080 5 C 0.003 3.997 6 N -0.067 5.067 7 C -0.138 4.138 8 C -0.227 4.227 9 C -0.203 4.203 10 C 0.386 3.614 11 O -0.450 6.450 12 N -0.340 5.340 13 C 0.033 3.967 14 H 0.127 0.873 15 C -0.172 4.172 16 C 0.060 3.940 17 N -0.347 5.347 18 C -0.372 4.372 19 H 0.091 0.909 20 C -0.253 4.253 21 N -0.595 5.595 22 Si 0.804 3.196 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.198 1.198 26 C -0.004 4.004 27 N -0.117 5.117 28 H 0.050 0.950 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.162 0.838 38 H 0.249 0.751 39 H 0.186 0.814 40 H 0.242 0.758 41 H 0.107 0.893 42 H 0.115 0.885 43 H 0.034 0.966 44 H 0.030 0.970 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -23.292 7.664 1.028 24.542 hybrid contribution 0.233 -0.275 -0.096 0.373 sum -23.060 7.389 0.932 24.232 Atomic orbital electron populations 1.22624 0.85561 1.03669 1.01518 1.61900 1.09645 1.14789 1.41719 1.22416 1.00780 0.87821 1.01400 1.22196 1.00951 0.92367 0.92464 1.22233 1.01775 0.90185 0.85513 1.45829 1.03813 1.33164 1.23875 1.23535 1.01002 0.96496 0.92721 1.22012 0.90455 1.06104 1.04166 1.21907 0.95892 1.04059 0.98449 1.17241 0.82354 0.79232 0.82555 1.90712 1.86661 1.38555 1.29089 1.45731 1.06849 1.47810 1.33583 1.22073 0.82734 0.95684 0.96240 0.87322 1.23088 0.97826 0.97679 0.98601 1.20935 0.96752 0.83993 0.92272 1.44697 1.67245 1.05532 1.17269 1.19361 1.30451 0.92596 0.94748 0.90920 1.25551 1.01516 0.96880 1.01380 1.70162 1.47582 1.07978 1.33778 0.85131 0.77181 0.77856 0.79470 1.21452 1.21659 1.19781 1.22082 0.93641 0.95019 0.89668 1.73515 1.02994 1.21194 1.13950 0.94971 0.90168 0.89576 0.92040 0.89641 0.95128 0.93949 0.91460 0.88363 0.83815 0.75116 0.81429 0.75824 0.89276 0.88534 0.96627 0.96955 0.94362 0.94361 0.95590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.32 127.69 1.19 1.31 16 2 N -0.56 -8.10 5.02 -948.84 -4.76 -12.86 16 3 C 0.02 0.33 9.57 127.69 1.22 1.55 16 4 C 0.05 0.82 5.06 86.30 0.44 1.26 16 5 C 0.12 1.74 6.32 86.38 0.55 2.28 16 6 N -0.28 -5.87 3.41 -347.97 -1.19 -7.06 16 7 C 0.00 0.09 11.40 83.54 0.95 1.04 16 8 C -0.20 -4.99 10.81 22.41 0.24 -4.75 16 9 C -0.04 -1.44 7.13 42.46 0.30 -1.14 16 10 C 0.60 22.76 7.83 86.75 0.68 23.44 16 11 O -0.57 -23.93 16.56 -3.92 -0.06 -23.99 16 12 N -0.69 -26.17 5.18 -438.95 -2.28 -28.45 16 13 C 0.14 5.23 3.43 46.39 0.16 5.39 16 14 H 0.11 3.82 7.53 -2.39 -0.02 3.80 16 15 C -0.13 -4.87 6.55 31.78 0.21 -4.66 16 16 C 0.19 9.18 5.36 86.73 0.47 9.64 16 17 N -0.62 -33.10 3.39 -691.98 -2.35 -35.45 16 18 C -0.24 -14.20 10.28 84.04 0.86 -13.33 16 19 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 20 C -0.06 -3.50 5.49 84.86 0.47 -3.03 16 21 N -0.95 -57.31 10.31 21.65 0.22 -57.09 16 22 Si 0.98 47.13 29.55 68.60 2.03 49.16 16 23 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 24 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 25 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 26 C 0.12 5.52 6.93 86.86 0.60 6.12 16 27 N -0.28 -8.42 11.36 -48.17 -0.55 -8.97 16 28 H 0.03 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.08 0.59 8.12 -2.39 -0.02 0.57 16 30 H 0.09 0.44 6.47 -2.39 -0.02 0.43 16 31 H 0.06 1.01 8.12 -2.38 -0.02 0.99 16 32 H 0.08 0.95 8.12 -2.39 -0.02 0.93 16 33 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.04 0.69 8.12 -2.39 -0.02 0.67 16 35 H 0.07 1.52 8.01 -2.39 -0.02 1.50 16 36 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.14 0.82 6.45 -2.39 -0.02 0.80 16 38 H 0.23 1.33 8.06 -2.92 -0.02 1.30 16 39 H 0.17 3.81 8.06 -2.91 -0.02 3.79 16 40 H 0.41 15.77 8.39 -92.71 -0.78 14.99 16 41 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 42 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.02 0.85 7.38 -2.38 -0.02 0.84 16 44 H 0.01 0.68 7.51 -2.38 -0.02 0.66 16 45 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 46 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 47 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -77.13 385.07 -0.41 -77.55 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.19 Total: 22.03 kcal Atomic # 6 Polarization: 16.78 SS G_CDS: 8.33 Total: 25.12 kcal Atomic # 7 Polarization: -138.98 SS G_CDS: -10.90 Total: -149.87 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.06 Total: -23.99 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -77.13 -0.41 -77.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014471958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.215 kcal (2) G-P(sol) polarization free energy of solvation -77.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds