Wall clock time and date at job start Fri Apr 10 2020 18:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46894 * 111.00159 * 2 1 4 4 C 1.46902 * 110.99903 * 123.95537 * 2 1 3 5 5 C 1.52998 * 109.47017 * 169.99819 * 4 2 1 6 6 N 1.46500 * 109.47013 * 179.97438 * 5 4 2 7 7 C 1.34259 * 125.75508 * 125.31357 * 6 5 4 8 8 C 1.38045 * 107.41396 * 180.10657 * 7 6 5 9 9 C 1.47438 * 126.40972 * 179.86842 * 8 7 6 10 10 O 1.21603 * 120.00200 * 359.71428 * 9 8 7 11 11 N 1.34777 * 119.99783 * 179.44014 * 9 8 7 12 12 C 1.46499 * 120.00195 * 180.27836 * 11 9 8 13 13 H 1.09006 * 110.88646 * 31.11494 * 12 11 9 14 14 C 1.55153 * 111.00527 * 154.99510 * 12 11 9 15 15 C 1.54331 * 102.94126 * 153.57596 * 14 12 11 16 16 N 1.47022 * 107.26992 * 337.80528 * 15 14 12 17 17 C 1.36933 * 125.64879 * 178.98226 * 16 15 14 18 18 H 1.08008 * 120.00232 * 179.97438 * 17 16 15 19 19 C 1.38810 * 120.00034 * 359.97438 * 17 16 15 20 20 N 1.31621 * 120.00072 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00073 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47404 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47266 * 120.00161 * 21 19 17 24 24 H 1.48502 * 109.47349 * 240.00354 * 21 19 17 25 25 C 1.47425 * 108.70562 * 358.94381 * 16 15 14 26 26 C 1.41283 * 107.17640 * 359.60784 * 8 7 6 27 27 N 1.30455 * 108.01947 * 0.23940 * 26 8 7 28 28 H 1.08996 * 109.47297 * 296.04336 * 1 2 3 29 29 H 1.09000 * 109.47130 * 56.04776 * 1 2 3 30 30 H 1.09000 * 109.47179 * 176.04893 * 1 2 3 31 31 H 1.08997 * 109.47161 * 183.95200 * 3 2 1 32 32 H 1.09000 * 109.47032 * 303.95007 * 3 2 1 33 33 H 1.08998 * 109.47193 * 63.95171 * 3 2 1 34 34 H 1.09004 * 109.47243 * 49.99625 * 4 2 1 35 35 H 1.09001 * 109.46991 * 289.99726 * 4 2 1 36 36 H 1.09004 * 109.47272 * 59.99824 * 5 4 2 37 37 H 1.09001 * 109.47164 * 299.99801 * 5 4 2 38 38 H 1.07996 * 126.29337 * 359.95249 * 7 6 5 39 39 H 0.97000 * 119.99736 * 0.27108 * 11 9 8 40 40 H 1.08997 * 110.72421 * 271.93674 * 14 12 11 41 41 H 1.09001 * 110.72275 * 35.21688 * 14 12 11 42 42 H 1.09000 * 109.88298 * 97.22387 * 15 14 12 43 43 H 1.08998 * 109.88223 * 218.39555 * 15 14 12 44 44 H 0.96993 * 120.00301 * 179.97438 * 20 19 17 45 45 H 1.09004 * 110.36839 * 265.29118 * 25 16 15 46 46 H 1.09004 * 110.37303 * 142.96409 * 25 16 15 47 47 H 1.08001 * 125.99469 * 180.21990 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9554 0.9703 6 7 4.0295 -1.7188 2.1051 7 6 4.7455 -2.8516 2.0245 8 6 5.0397 -3.2471 3.3139 9 6 5.8079 -4.4419 3.7091 10 8 6.2460 -5.1920 2.8582 11 7 6.0292 -4.6998 5.0134 12 6 6.7976 -5.8836 5.4059 13 1 7.5443 -6.1302 4.6510 14 6 7.4573 -5.6828 6.7958 15 6 7.5972 -7.1262 7.3238 16 7 6.6168 -7.9515 6.6032 17 6 6.4344 -9.2988 6.7662 18 1 5.6839 -9.8162 6.1868 19 6 7.2140 -9.9997 7.6761 20 7 8.1288 -9.3694 8.3818 21 14 6.9646 -11.8375 7.8990 22 1 5.8832 -12.3037 6.9943 23 1 8.2250 -12.5513 7.5717 24 1 6.5878 -12.1188 9.3076 25 6 5.8619 -7.0882 5.6768 26 6 4.4722 -2.2893 4.1838 27 7 3.8749 -1.3866 3.4556 28 1 -0.3634 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0827 1.3431 -0.0708 32 1 1.5899 1.9162 -0.8525 33 1 1.7044 1.8723 0.9233 34 1 1.5089 -1.7407 1.1757 35 1 1.7975 -0.2248 2.0628 36 1 3.9909 0.0193 0.9323 37 1 3.7023 -1.4967 0.0451 38 1 5.0357 -3.3613 1.1176 39 1 5.6797 -4.1014 5.6921 40 1 8.4355 -5.2128 6.6942 41 1 6.8115 -5.0947 7.4479 42 1 8.6048 -7.4951 7.1318 43 1 7.3884 -7.1516 8.3932 44 1 8.6733 -9.8590 9.0179 45 1 4.9353 -6.7516 6.1418 46 1 5.6505 -7.6204 4.7493 47 1 4.5234 -2.3024 5.2625 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015822306.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:06 Heat of formation + Delta-G solvation = 80.577995 kcal Electronic energy + Delta-G solvation = -26234.042837 eV Core-core repulsion = 22454.746692 eV Total energy + Delta-G solvation = -3779.296145 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.56813 -39.17088 -38.17498 -37.04930 -34.12675 -33.74140 -31.82627 -30.59477 -29.55620 -28.94066 -28.16221 -27.01769 -25.17409 -24.40920 -22.81854 -22.10024 -20.86357 -20.29418 -20.19118 -19.68930 -18.08212 -16.91019 -16.45607 -16.27335 -15.85825 -15.65360 -15.26240 -15.02799 -14.59072 -14.44770 -14.28672 -14.13443 -13.77868 -13.59994 -13.00833 -12.96649 -12.76031 -12.54021 -12.34980 -12.29774 -12.17406 -12.12246 -11.75423 -11.71535 -11.19182 -10.95656 -10.85803 -10.71231 -10.28561 -10.03423 -9.84194 -9.82875 -9.69732 -9.56642 -9.02446 -8.91397 -8.60049 -8.51802 -6.78817 -5.67192 -3.00325 1.39895 1.98415 2.06165 3.37745 3.43528 3.48167 3.50931 3.53621 3.62121 4.11340 4.24560 4.52491 4.55432 4.57744 4.65493 4.73459 4.83613 4.94832 4.98008 5.07320 5.15172 5.23716 5.34385 5.35587 5.36417 5.39126 5.49420 5.56566 5.71668 5.81447 5.87125 6.19162 6.27280 6.30477 6.34012 6.40138 6.48651 6.59103 6.68374 6.77538 7.07335 7.31101 7.59081 7.63072 7.82457 7.89610 8.29375 8.55961 9.26463 9.86427 10.51669 11.44813 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.031048 B = 0.001949 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.608415 B =14360.667912 C =14757.624096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.546 5.546 3 C 0.017 3.983 4 C 0.042 3.958 5 C 0.135 3.865 6 N -0.364 5.364 7 C 0.128 3.872 8 C -0.286 4.286 9 C 0.591 3.409 10 O -0.550 6.550 11 N -0.712 5.712 12 C 0.129 3.871 13 H 0.097 0.903 14 C -0.150 4.150 15 C 0.179 3.821 16 N -0.604 5.604 17 C -0.224 4.224 18 H 0.079 0.921 19 C -0.010 4.010 20 N -0.924 5.924 21 Si 0.913 3.087 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.129 3.871 26 C 0.083 3.917 27 N -0.300 5.300 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.030 0.970 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.188 0.812 39 H 0.395 0.605 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.049 0.951 43 H 0.046 0.954 44 H 0.251 0.749 45 H 0.020 0.980 46 H 0.043 0.957 47 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.512 23.619 -14.558 30.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.132 4.132 4 C -0.086 4.086 5 C 0.013 3.987 6 N -0.143 5.143 7 C -0.022 4.022 8 C -0.301 4.301 9 C 0.378 3.622 10 O -0.429 6.429 11 N -0.362 5.362 12 C 0.024 3.976 13 H 0.115 0.885 14 C -0.189 4.189 15 C 0.054 3.946 16 N -0.331 5.331 17 C -0.352 4.352 18 H 0.097 0.903 19 C -0.206 4.206 20 N -0.572 5.572 21 Si 0.743 3.257 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.001 3.999 26 C -0.105 4.105 27 N -0.120 5.120 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.127 0.873 38 H 0.205 0.795 39 H 0.229 0.771 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.037 0.963 46 H 0.061 0.939 47 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -11.693 23.839 -15.580 30.786 hybrid contribution -0.094 -0.985 1.304 1.637 sum -11.787 22.854 -14.276 29.411 Atomic orbital electron populations 1.22389 0.86318 1.02719 1.00872 1.61917 1.08692 1.14171 1.42261 1.22514 1.00994 0.88611 1.01041 1.22338 0.93774 0.99739 0.92769 1.21764 0.94555 0.97089 0.85276 1.48443 1.40713 1.19292 1.05871 1.22998 0.92260 0.87239 0.99741 1.20367 1.14638 1.02332 0.92753 1.17222 0.78816 0.83465 0.82681 1.90781 1.52034 1.49647 1.50405 1.45763 1.56043 1.27688 1.06664 1.22288 0.93991 0.84442 0.96838 0.88493 1.23183 0.99731 1.01049 0.94899 1.21147 0.94113 0.83745 0.95604 1.44403 1.40199 1.04306 1.44208 1.19128 1.15829 0.81934 1.18345 0.90337 1.24803 0.98487 0.98254 0.99072 1.69958 1.24742 1.34073 1.28388 0.86024 0.77312 0.84918 0.77413 1.20503 1.21768 1.21818 1.21835 0.93500 0.90774 0.93744 1.24096 0.94822 0.91336 1.00245 1.77122 1.24616 1.23991 0.86239 0.95290 0.90911 0.91043 0.91076 0.90953 0.95143 0.89932 0.92825 0.89350 0.87328 0.79462 0.77082 0.91615 0.92053 0.93260 0.93622 0.93834 0.96266 0.93908 0.79322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.57 60.06 0.57 0.70 16 2 N -0.55 -3.26 5.02 -251.27 -1.26 -4.52 16 3 C 0.02 0.08 9.32 60.06 0.56 0.64 16 4 C 0.04 0.28 5.13 -3.82 -0.02 0.26 16 5 C 0.13 0.86 6.41 -4.04 -0.03 0.84 16 6 N -0.36 -3.43 3.65 -60.81 -0.22 -3.66 16 7 C 0.13 1.35 11.25 -16.56 -0.19 1.16 16 8 C -0.29 -3.52 6.13 -105.06 -0.64 -4.17 16 9 C 0.59 9.20 7.81 -12.51 -0.10 9.11 16 10 O -0.55 -10.68 16.54 5.27 0.09 -10.59 16 11 N -0.71 -10.46 5.19 -52.79 -0.27 -10.73 16 12 C 0.13 2.39 3.42 -65.78 -0.23 2.16 16 13 H 0.10 1.99 7.54 -51.93 -0.39 1.59 16 14 C -0.15 -2.71 6.60 -24.89 -0.16 -2.87 16 15 C 0.18 4.34 5.37 -3.06 -0.02 4.32 16 16 N -0.60 -15.82 3.39 -170.06 -0.58 -16.40 16 17 C -0.22 -6.41 10.28 -15.06 -0.15 -6.56 16 18 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 19 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 20 N -0.92 -27.37 10.31 55.49 0.57 -26.80 16 21 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 C 0.13 2.82 6.93 -2.53 -0.02 2.81 16 26 C 0.08 0.87 11.50 -16.98 -0.20 0.68 16 27 N -0.30 -3.30 12.33 30.86 0.38 -2.92 16 28 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.07 0.30 8.12 -51.93 -0.42 -0.13 16 30 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 31 H 0.07 0.29 6.47 -51.93 -0.34 -0.04 16 32 H 0.07 0.28 8.12 -51.93 -0.42 -0.14 16 33 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.08 0.61 8.06 -51.93 -0.42 0.19 16 35 H 0.05 0.43 8.12 -51.93 -0.42 0.01 16 36 H 0.09 0.50 6.55 -51.93 -0.34 0.16 16 37 H 0.11 0.53 8.06 -51.93 -0.42 0.11 16 38 H 0.19 1.61 8.06 -52.49 -0.42 1.18 16 39 H 0.40 4.55 7.52 -40.82 -0.31 4.24 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.06 0.98 8.00 -51.93 -0.42 0.56 16 42 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 43 H 0.05 1.21 7.51 -51.93 -0.39 0.82 16 44 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.19 1.42 7.50 -52.49 -0.39 1.03 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -35.00 384.52 -8.79 -43.79 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -7.56 Total: -0.15 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -0.71 Total: 8.68 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: -1.38 Total: -65.02 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.00 -8.79 -43.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015822306.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.368 kcal (2) G-P(sol) polarization free energy of solvation -34.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds