Wall clock time and date at job start Fri Apr 10 2020 18:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46894 * 111.00159 * 2 1 4 4 C 1.46902 * 110.99903 * 123.95537 * 2 1 3 5 5 C 1.52998 * 109.47017 * 169.99819 * 4 2 1 6 6 N 1.46500 * 109.47013 * 179.97438 * 5 4 2 7 7 C 1.34259 * 125.75508 * 125.31357 * 6 5 4 8 8 C 1.38045 * 107.41396 * 180.10657 * 7 6 5 9 9 C 1.47438 * 126.40972 * 179.86842 * 8 7 6 10 10 O 1.21603 * 120.00200 * 359.71428 * 9 8 7 11 11 N 1.34777 * 119.99783 * 179.44014 * 9 8 7 12 12 C 1.46499 * 120.00195 * 180.27836 * 11 9 8 13 13 H 1.09006 * 110.88646 * 31.11494 * 12 11 9 14 14 C 1.55153 * 111.00527 * 154.99510 * 12 11 9 15 15 C 1.54331 * 102.94126 * 153.57596 * 14 12 11 16 16 N 1.47022 * 107.26992 * 337.80528 * 15 14 12 17 17 C 1.36933 * 125.64879 * 178.98226 * 16 15 14 18 18 H 1.08008 * 120.00232 * 179.97438 * 17 16 15 19 19 C 1.38810 * 120.00034 * 359.97438 * 17 16 15 20 20 N 1.31621 * 120.00072 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00073 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47404 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47266 * 120.00161 * 21 19 17 24 24 H 1.48502 * 109.47349 * 240.00354 * 21 19 17 25 25 C 1.47425 * 108.70562 * 358.94381 * 16 15 14 26 26 C 1.41283 * 107.17640 * 359.60784 * 8 7 6 27 27 N 1.30455 * 108.01947 * 0.23940 * 26 8 7 28 28 H 1.08996 * 109.47297 * 296.04336 * 1 2 3 29 29 H 1.09000 * 109.47130 * 56.04776 * 1 2 3 30 30 H 1.09000 * 109.47179 * 176.04893 * 1 2 3 31 31 H 1.08997 * 109.47161 * 183.95200 * 3 2 1 32 32 H 1.09000 * 109.47032 * 303.95007 * 3 2 1 33 33 H 1.08998 * 109.47193 * 63.95171 * 3 2 1 34 34 H 1.09004 * 109.47243 * 49.99625 * 4 2 1 35 35 H 1.09001 * 109.46991 * 289.99726 * 4 2 1 36 36 H 1.09004 * 109.47272 * 59.99824 * 5 4 2 37 37 H 1.09001 * 109.47164 * 299.99801 * 5 4 2 38 38 H 1.07996 * 126.29337 * 359.95249 * 7 6 5 39 39 H 0.97000 * 119.99736 * 0.27108 * 11 9 8 40 40 H 1.08997 * 110.72421 * 271.93674 * 14 12 11 41 41 H 1.09001 * 110.72275 * 35.21688 * 14 12 11 42 42 H 1.09000 * 109.88298 * 97.22387 * 15 14 12 43 43 H 1.08998 * 109.88223 * 218.39555 * 15 14 12 44 44 H 0.96993 * 120.00301 * 179.97438 * 20 19 17 45 45 H 1.09004 * 110.36839 * 265.29118 * 25 16 15 46 46 H 1.09004 * 110.37303 * 142.96409 * 25 16 15 47 47 H 1.08001 * 125.99469 * 180.21990 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9554 0.9703 6 7 4.0295 -1.7188 2.1051 7 6 4.7455 -2.8516 2.0245 8 6 5.0397 -3.2471 3.3139 9 6 5.8079 -4.4419 3.7091 10 8 6.2460 -5.1920 2.8582 11 7 6.0292 -4.6998 5.0134 12 6 6.7976 -5.8836 5.4059 13 1 7.5443 -6.1302 4.6510 14 6 7.4573 -5.6828 6.7958 15 6 7.5972 -7.1262 7.3238 16 7 6.6168 -7.9515 6.6032 17 6 6.4344 -9.2988 6.7662 18 1 5.6839 -9.8162 6.1868 19 6 7.2140 -9.9997 7.6761 20 7 8.1288 -9.3694 8.3818 21 14 6.9646 -11.8375 7.8990 22 1 5.8832 -12.3037 6.9943 23 1 8.2250 -12.5513 7.5717 24 1 6.5878 -12.1188 9.3076 25 6 5.8619 -7.0882 5.6768 26 6 4.4722 -2.2893 4.1838 27 7 3.8749 -1.3866 3.4556 28 1 -0.3634 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0827 1.3431 -0.0708 32 1 1.5899 1.9162 -0.8525 33 1 1.7044 1.8723 0.9233 34 1 1.5089 -1.7407 1.1757 35 1 1.7975 -0.2248 2.0628 36 1 3.9909 0.0193 0.9323 37 1 3.7023 -1.4967 0.0451 38 1 5.0357 -3.3613 1.1176 39 1 5.6797 -4.1014 5.6921 40 1 8.4355 -5.2128 6.6942 41 1 6.8115 -5.0947 7.4479 42 1 8.6048 -7.4951 7.1318 43 1 7.3884 -7.1516 8.3932 44 1 8.6733 -9.8590 9.0179 45 1 4.9353 -6.7516 6.1418 46 1 5.6505 -7.6204 4.7493 47 1 4.5234 -2.3024 5.2625 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015822306.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:05 Heat of formation + Delta-G solvation = 54.704232 kcal Electronic energy + Delta-G solvation = -26235.164808 eV Core-core repulsion = 22454.746692 eV Total energy + Delta-G solvation = -3780.418116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.39265 -40.49349 -38.80659 -38.57266 -35.57475 -34.64191 -33.64416 -31.49576 -31.00146 -30.10440 -28.65991 -28.53079 -26.53537 -25.59835 -23.91976 -22.69527 -22.07424 -21.77536 -21.45901 -20.91897 -19.17336 -18.70926 -17.35304 -17.12186 -16.99665 -16.64921 -16.29621 -16.00738 -15.89792 -15.74804 -15.42122 -15.20817 -14.87453 -14.39283 -14.36050 -14.10734 -13.88863 -13.78176 -13.64825 -13.39139 -13.01210 -12.93286 -12.78393 -12.70428 -12.60446 -12.36956 -12.30143 -12.10300 -11.98311 -11.89546 -11.79392 -11.53948 -10.87910 -10.71035 -10.58588 -10.10953 -9.64434 -9.47024 -8.89532 -7.84961 -5.20780 0.53405 1.17839 1.29560 1.46473 1.47804 1.58252 2.26892 2.49802 2.53309 2.91253 3.33563 3.47733 3.72570 3.74388 3.80651 3.84415 3.97332 4.10747 4.14506 4.21846 4.25389 4.27536 4.36940 4.44680 4.57639 4.62778 4.65240 4.72211 4.75244 4.79072 4.82966 4.91963 4.98484 5.02164 5.02910 5.16707 5.41498 5.44706 5.61096 5.68234 5.76161 5.76411 5.89893 5.97412 6.20497 6.50140 6.72297 7.11020 7.37414 7.76609 8.40105 9.25293 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.031048 B = 0.001949 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.608415 B =14360.667912 C =14757.624096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.551 5.551 3 C 0.015 3.985 4 C 0.051 3.949 5 C 0.131 3.869 6 N -0.357 5.357 7 C 0.137 3.863 8 C -0.310 4.310 9 C 0.593 3.407 10 O -0.595 6.595 11 N -0.698 5.698 12 C 0.149 3.851 13 H 0.075 0.925 14 C -0.128 4.128 15 C 0.184 3.816 16 N -0.626 5.626 17 C -0.244 4.244 18 H 0.078 0.922 19 C -0.065 4.065 20 N -0.949 5.949 21 Si 0.980 3.020 22 H -0.269 1.269 23 H -0.291 1.291 24 H -0.288 1.288 25 C 0.128 3.872 26 C 0.090 3.910 27 N -0.317 5.317 28 H 0.025 0.975 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.025 0.975 34 H 0.073 0.927 35 H 0.038 0.962 36 H 0.100 0.900 37 H 0.128 0.872 38 H 0.205 0.795 39 H 0.415 0.585 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.013 0.987 43 H 0.017 0.983 44 H 0.248 0.752 45 H 0.032 0.968 46 H 0.024 0.976 47 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.523 25.368 -15.328 32.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.276 5.276 3 C -0.133 4.133 4 C -0.078 4.078 5 C 0.011 3.989 6 N -0.135 5.135 7 C -0.016 4.016 8 C -0.325 4.325 9 C 0.383 3.617 10 O -0.477 6.477 11 N -0.349 5.349 12 C 0.042 3.958 13 H 0.094 0.906 14 C -0.167 4.167 15 C 0.058 3.942 16 N -0.353 5.353 17 C -0.373 4.373 18 H 0.095 0.905 19 C -0.258 4.258 20 N -0.598 5.598 21 Si 0.808 3.192 22 H -0.193 1.193 23 H -0.218 1.218 24 H -0.215 1.215 25 C 0.001 3.999 26 C -0.098 4.098 27 N -0.137 5.137 28 H 0.044 0.956 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.044 0.956 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.118 0.882 37 H 0.146 0.854 38 H 0.221 0.779 39 H 0.252 0.748 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.031 0.969 43 H 0.036 0.964 44 H 0.058 0.942 45 H 0.050 0.950 46 H 0.043 0.957 47 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -12.753 25.661 -16.354 32.994 hybrid contribution 0.152 -1.466 1.453 2.070 sum -12.601 24.194 -14.901 31.084 Atomic orbital electron populations 1.22433 0.85912 1.02886 1.01215 1.61957 1.09172 1.14826 1.41607 1.22571 1.01507 0.87955 1.01227 1.22196 0.93926 0.99212 0.92472 1.22024 0.94283 0.97673 0.84948 1.48662 1.39838 1.18912 1.06109 1.23289 0.91279 0.87151 0.99886 1.20132 1.16211 1.02059 0.94077 1.17628 0.78160 0.83784 0.82165 1.90761 1.53960 1.51399 1.51541 1.45484 1.55553 1.26625 1.07240 1.21767 0.92912 0.84601 0.96484 0.90641 1.23001 1.01805 0.97320 0.94531 1.20951 0.91853 0.87130 0.94231 1.44689 1.41032 1.04326 1.45248 1.19466 1.15900 0.83581 1.18386 0.90459 1.25648 0.98454 1.02645 0.99023 1.70166 1.25384 1.35457 1.28758 0.84992 0.77272 0.79596 0.77348 1.19313 1.21815 1.21529 1.21949 0.94326 0.91453 0.92160 1.24490 0.93631 0.90227 1.01411 1.77119 1.25124 1.24480 0.86991 0.95601 0.89795 0.91133 0.90326 0.89987 0.95629 0.90799 0.94328 0.88189 0.85385 0.77872 0.74790 0.89300 0.88887 0.96864 0.96447 0.94249 0.94995 0.95710 0.76729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.57 127.69 1.22 1.43 16 2 N -0.55 -5.66 5.02 -948.88 -4.76 -10.42 16 3 C 0.02 0.12 9.32 127.69 1.19 1.31 16 4 C 0.05 0.61 5.13 86.30 0.44 1.05 16 5 C 0.13 1.38 6.41 86.38 0.55 1.94 16 6 N -0.36 -5.97 3.65 -346.30 -1.26 -7.23 16 7 C 0.14 2.60 11.25 84.28 0.95 3.55 16 8 C -0.31 -7.06 6.13 -20.15 -0.12 -7.18 16 9 C 0.59 17.75 7.81 86.67 0.68 18.43 16 10 O -0.59 -23.02 16.54 -4.04 -0.07 -23.09 16 11 N -0.70 -19.18 5.19 -439.20 -2.28 -21.46 16 12 C 0.15 5.37 3.42 46.38 0.16 5.53 16 13 H 0.08 3.10 7.54 -2.38 -0.02 3.09 16 14 C -0.13 -4.43 6.60 31.78 0.21 -4.22 16 15 C 0.18 9.05 5.37 86.73 0.47 9.52 16 16 N -0.63 -33.41 3.39 -691.96 -2.35 -35.76 16 17 C -0.24 -14.26 10.28 84.03 0.86 -13.40 16 18 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 19 C -0.06 -3.77 5.49 84.86 0.47 -3.30 16 20 N -0.95 -57.66 10.31 21.65 0.22 -57.43 16 21 Si 0.98 46.90 29.55 68.60 2.03 48.93 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 25 C 0.13 5.61 6.93 86.86 0.60 6.21 16 26 C 0.09 1.67 11.50 85.65 0.99 2.66 16 27 N -0.32 -6.28 12.33 -56.27 -0.69 -6.98 16 28 H 0.03 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.08 0.55 8.12 -2.39 -0.02 0.53 16 30 H 0.07 0.62 8.12 -2.39 -0.02 0.61 16 31 H 0.08 0.47 6.47 -2.39 -0.02 0.45 16 32 H 0.08 0.47 8.12 -2.39 -0.02 0.45 16 33 H 0.03 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.07 1.00 8.06 -2.39 -0.02 0.99 16 35 H 0.04 0.58 8.12 -2.39 -0.02 0.56 16 36 H 0.10 0.87 6.55 -2.39 -0.02 0.86 16 37 H 0.13 0.89 8.06 -2.39 -0.02 0.87 16 38 H 0.20 3.09 8.06 -2.91 -0.02 3.07 16 39 H 0.41 8.23 7.52 -92.71 -0.70 7.53 16 40 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.09 2.67 8.00 -2.39 -0.02 2.65 16 42 H 0.01 0.73 7.38 -2.39 -0.02 0.71 16 43 H 0.02 0.94 7.51 -2.39 -0.02 0.92 16 44 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 45 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 46 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.22 2.52 7.50 -2.91 -0.02 2.50 16 Total: -1.00 -77.79 384.52 -0.23 -78.03 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.27 Total: 11.90 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 8.66 Total: 23.51 kcal Atomic # 7 Polarization: -128.16 SS G_CDS: -11.12 Total: -139.28 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.07 Total: -23.09 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -77.79 -0.23 -78.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015822306.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.732 kcal (2) G-P(sol) polarization free energy of solvation -77.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds