Wall clock time and date at job start Fri Apr 10 2020 18:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 110.99543 * 2 1 4 4 C 1.46894 * 110.99947 * 123.95688 * 2 1 3 5 5 C 1.52997 * 109.47515 * 66.04655 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34252 * 125.74854 * 124.71726 * 6 5 4 8 8 C 1.38053 * 107.41533 * 179.84887 * 7 6 5 9 9 C 1.47426 * 126.41658 * 180.12604 * 8 7 6 10 10 O 1.21598 * 120.00212 * 0.31490 * 9 8 7 11 11 N 1.34784 * 119.99662 * 180.31263 * 9 8 7 12 12 C 1.46494 * 119.99729 * 179.97438 * 11 9 8 13 13 H 1.09007 * 112.85178 * 336.20318 * 12 11 9 14 14 C 1.53785 * 113.61482 * 107.50302 * 12 11 9 15 15 C 1.53786 * 87.07763 * 89.11940 * 14 12 11 16 16 H 1.09002 * 113.60983 * 270.88559 * 15 14 12 17 17 N 1.46497 * 113.69055 * 139.99399 * 15 14 12 18 18 C 1.36935 * 119.99727 * 107.46708 * 17 15 14 19 19 H 1.07999 * 120.00468 * 359.97438 * 18 17 15 20 20 C 1.38819 * 120.00065 * 180.02562 * 18 17 15 21 21 N 1.31617 * 119.99508 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00282 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.46993 * 89.99496 * 22 20 18 24 24 H 1.48496 * 109.47236 * 209.99876 * 22 20 18 25 25 H 1.48498 * 109.46909 * 329.99624 * 22 20 18 26 26 C 1.53780 * 113.61833 * 205.00602 * 12 11 9 27 27 C 1.41292 * 107.16658 * 0.41012 * 8 7 6 28 28 N 1.30448 * 108.02382 * 359.74905 * 27 8 7 29 29 H 1.08997 * 109.47044 * 296.04083 * 1 2 3 30 30 H 1.09001 * 109.47499 * 56.04429 * 1 2 3 31 31 H 1.09003 * 109.47124 * 176.04281 * 1 2 3 32 32 H 1.09002 * 109.46576 * 183.95470 * 3 2 1 33 33 H 1.09002 * 109.47680 * 303.94979 * 3 2 1 34 34 H 1.08997 * 109.47173 * 63.95741 * 3 2 1 35 35 H 1.09002 * 109.47104 * 306.04387 * 4 2 1 36 36 H 1.08998 * 109.46828 * 186.05219 * 4 2 1 37 37 H 1.09002 * 109.47153 * 59.99762 * 5 4 2 38 38 H 1.09001 * 109.46832 * 299.99953 * 5 4 2 39 39 H 1.08000 * 126.30105 * 359.97438 * 7 6 5 40 40 H 0.96998 * 119.99822 * 0.02562 * 11 9 8 41 41 H 1.08998 * 113.61641 * 203.66479 * 14 12 11 42 42 H 1.08992 * 113.61054 * 334.57031 * 14 12 11 43 43 H 0.97003 * 120.00149 * 287.46154 * 17 15 14 44 44 H 0.97002 * 119.99850 * 179.97438 * 21 20 18 45 45 H 1.09004 * 113.61332 * 25.42746 * 26 12 11 46 46 H 1.08996 * 113.62050 * 156.33603 * 26 12 11 47 47 H 1.08003 * 125.98916 * 179.76560 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9703 6 7 2.1571 -3.0066 2.1045 7 6 1.4392 -3.7988 2.9166 8 6 2.3082 -4.3322 3.8474 9 6 1.9605 -5.2623 4.9371 10 8 0.8112 -5.6348 5.0750 11 7 2.9165 -5.6996 5.7805 12 6 2.5709 -6.6234 6.8637 13 1 1.5207 -6.5659 7.1501 14 6 3.0703 -8.0592 6.6317 15 6 4.3709 -7.6366 7.3353 16 1 5.1201 -7.2263 6.6582 17 7 4.9140 -8.6596 8.2323 18 6 6.0412 -9.3519 7.8784 19 1 6.5296 -9.1440 6.9378 20 6 6.5557 -10.3216 8.7281 21 7 5.9602 -10.5752 9.8741 22 14 8.0929 -11.2665 8.2449 23 1 9.2929 -10.5475 8.7432 24 1 8.0467 -12.6255 8.8418 25 1 8.1612 -11.3777 6.7657 26 6 3.5390 -6.5632 8.0571 27 6 3.5920 -3.8146 3.5640 28 7 3.4907 -3.0290 2.5276 29 1 -0.3633 0.4511 0.9233 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3633 -1.0252 -0.0709 32 1 3.0827 1.3432 -0.0709 33 1 1.5898 1.9164 -0.8525 34 1 1.7043 1.8723 0.9233 35 1 1.5611 -0.3873 2.0627 36 1 3.0797 -0.6610 1.1756 37 1 2.0658 -2.6214 0.0450 38 1 0.5472 -2.3475 0.9322 39 1 0.3776 -3.9862 2.8524 40 1 3.8332 -5.4021 5.6707 41 1 2.5031 -8.8125 7.1784 42 1 3.2047 -8.3100 5.5796 43 1 4.4753 -8.8465 9.0770 44 1 6.3195 -11.2531 10.4677 45 1 4.0518 -5.6064 8.1555 46 1 3.0999 -6.9076 8.9934 47 1 4.4984 -4.0316 4.1097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020721170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:31 Heat of formation + Delta-G solvation = 85.351931 kcal Electronic energy + Delta-G solvation = -25876.664400 eV Core-core repulsion = 22097.575268 eV Total energy + Delta-G solvation = -3779.089132 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.63494 -39.60556 -38.26537 -37.66789 -34.15427 -33.84890 -32.46973 -30.67096 -29.97509 -29.17792 -28.20431 -25.36986 -25.06563 -24.52905 -23.18287 -22.23640 -21.85704 -20.87840 -20.18913 -18.85743 -18.16845 -17.09443 -16.50720 -16.38484 -15.83375 -15.70795 -15.29952 -15.15630 -14.90269 -14.61027 -14.27831 -14.14541 -13.84493 -13.76657 -13.36985 -13.05370 -13.00960 -12.61547 -12.58703 -12.32169 -12.21680 -12.02733 -11.80692 -11.78874 -11.59525 -11.16316 -10.88302 -10.74556 -10.27525 -10.19223 -9.88902 -9.88411 -9.74937 -9.52258 -9.07865 -8.99033 -8.87232 -8.62542 -6.95617 -5.77945 -3.06631 1.32557 1.93125 2.00430 3.33045 3.37196 3.43380 3.48857 3.50026 3.50486 3.97026 4.31215 4.46535 4.51010 4.55537 4.59598 4.69903 4.76007 4.88285 4.96714 4.98746 5.07446 5.11671 5.23597 5.27615 5.27955 5.33041 5.35057 5.48966 5.51492 5.54928 5.91247 5.98189 6.11994 6.22035 6.27655 6.30304 6.31184 6.37595 6.52604 6.59043 6.69775 6.75584 7.13887 7.26510 7.69603 7.73491 8.40503 8.42194 9.51819 10.09715 10.44038 11.44402 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.026298 B = 0.001881 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.454591 B =14884.168484 C =15527.917669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.545 5.545 3 C 0.025 3.975 4 C 0.043 3.957 5 C 0.134 3.866 6 N -0.363 5.363 7 C 0.126 3.874 8 C -0.288 4.288 9 C 0.595 3.405 10 O -0.555 6.555 11 N -0.702 5.702 12 C 0.118 3.882 13 H 0.096 0.904 14 C -0.176 4.176 15 C 0.166 3.834 16 H 0.074 0.926 17 N -0.712 5.712 18 C -0.244 4.244 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.160 4.160 27 C 0.083 3.917 28 N -0.295 5.295 29 H 0.029 0.971 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.028 0.972 35 H 0.042 0.958 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.187 0.813 40 H 0.399 0.601 41 H 0.085 0.915 42 H 0.057 0.943 43 H 0.386 0.614 44 H 0.255 0.745 45 H 0.064 0.936 46 H 0.091 0.909 47 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.271 23.589 -18.979 32.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.270 5.270 3 C -0.123 4.123 4 C -0.085 4.085 5 C 0.013 3.987 6 N -0.142 5.142 7 C -0.025 4.025 8 C -0.303 4.303 9 C 0.383 3.617 10 O -0.434 6.434 11 N -0.352 5.352 12 C 0.013 3.987 13 H 0.114 0.886 14 C -0.218 4.218 15 C 0.054 3.946 16 H 0.091 0.909 17 N -0.350 5.350 18 C -0.375 4.375 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.199 4.199 27 C -0.105 4.105 28 N -0.114 5.114 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.204 0.796 40 H 0.233 0.767 41 H 0.104 0.896 42 H 0.076 0.924 43 H 0.220 0.780 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.109 0.891 47 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -11.167 23.850 -20.294 33.247 hybrid contribution 0.411 -0.672 1.291 1.512 sum -10.756 23.178 -19.003 31.844 Atomic orbital electron populations 1.22535 0.87115 1.02565 1.01110 1.61900 1.08219 1.14563 1.42270 1.22392 1.01143 0.87906 1.00827 1.22350 1.02224 0.91929 0.92033 1.21776 0.99357 0.90884 0.86714 1.48468 1.06082 1.35370 1.24266 1.22963 0.98680 0.91119 0.89701 1.20315 0.93965 1.11425 1.04580 1.17188 0.84841 0.79275 0.80437 1.90754 1.19864 1.59369 1.73395 1.45460 1.11219 1.47576 1.30898 1.21793 0.99445 0.90264 0.87205 0.88622 1.24301 1.01186 0.95048 1.01304 1.21629 0.91675 0.89212 0.92080 0.90853 1.42400 1.30588 1.41089 1.20936 1.19301 1.02126 1.13721 1.02379 0.91100 1.24766 0.99464 0.99910 0.96761 1.69660 1.41495 1.35965 1.10869 0.86190 0.83052 0.79311 0.77641 1.21714 1.21771 1.20741 1.23863 0.98020 1.00467 0.97594 1.24140 0.97960 0.94033 0.94334 1.77162 0.95359 1.23293 1.15624 0.95213 0.90835 0.91074 0.90937 0.90896 0.95355 0.93988 0.88890 0.88258 0.88303 0.79607 0.76690 0.89638 0.92387 0.78024 0.93466 0.91755 0.89068 0.79179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.32 60.07 0.56 0.62 16 2 N -0.55 -3.06 5.02 -251.27 -1.26 -4.32 16 3 C 0.03 0.12 9.57 60.06 0.57 0.69 16 4 C 0.04 0.27 5.13 -3.83 -0.02 0.25 16 5 C 0.13 0.81 6.41 -4.04 -0.03 0.79 16 6 N -0.36 -3.27 3.65 -60.80 -0.22 -3.49 16 7 C 0.13 1.23 11.25 -16.56 -0.19 1.05 16 8 C -0.29 -3.34 6.13 -105.06 -0.64 -3.98 16 9 C 0.60 8.47 7.81 -12.52 -0.10 8.38 16 10 O -0.55 -9.75 16.50 5.28 0.09 -9.67 16 11 N -0.70 -9.31 5.25 -54.09 -0.28 -9.59 16 12 C 0.12 1.81 4.32 -67.12 -0.29 1.52 16 13 H 0.10 1.54 7.46 -51.92 -0.39 1.16 16 14 C -0.18 -3.13 7.68 -25.91 -0.20 -3.33 16 15 C 0.17 3.18 4.35 -67.11 -0.29 2.89 16 16 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 17 N -0.71 -17.59 5.40 -52.63 -0.28 -17.87 16 18 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 22 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 C -0.16 -2.52 7.58 -25.92 -0.20 -2.72 16 27 C 0.08 0.85 11.50 -16.98 -0.20 0.66 16 28 N -0.29 -3.18 12.33 30.86 0.38 -2.80 16 29 H 0.03 0.13 8.14 -51.93 -0.42 -0.30 16 30 H 0.07 0.25 8.12 -51.93 -0.42 -0.17 16 31 H 0.07 0.23 6.47 -51.93 -0.34 -0.11 16 32 H 0.07 0.34 8.12 -51.93 -0.42 -0.09 16 33 H 0.07 0.27 8.12 -51.93 -0.42 -0.15 16 34 H 0.03 0.13 8.14 -51.93 -0.42 -0.29 16 35 H 0.04 0.29 8.12 -51.93 -0.42 -0.13 16 36 H 0.09 0.70 8.06 -51.93 -0.42 0.28 16 37 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.38 6.47 -51.93 -0.34 0.05 16 39 H 0.19 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.40 4.36 7.65 -40.82 -0.31 4.04 16 41 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.39 10.12 7.92 -40.82 -0.32 9.79 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.09 1.48 8.12 -51.93 -0.42 1.06 16 47 H 0.19 1.43 7.50 -52.48 -0.39 1.04 16 LS Contribution 391.92 15.07 5.91 5.91 Total: -1.00 -34.28 391.92 -8.78 -43.05 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -7.54 Total: 9.31 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -1.26 Total: -0.51 kcal Atomic # 7 Polarization: -64.41 SS G_CDS: -0.95 Total: -65.36 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.28 -8.78 -43.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020721170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.406 kcal (2) G-P(sol) polarization free energy of solvation -34.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds