Wall clock time and date at job start Fri Apr 10 2020 18:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47437 * 2 1 4 4 C 1.53005 * 109.46920 * 119.99875 * 2 1 3 5 5 C 1.52996 * 109.47283 * 174.99898 * 4 2 1 6 6 N 1.46503 * 109.47344 * 179.97438 * 5 4 2 7 7 C 1.34807 * 126.59037 * 124.99701 * 6 5 4 8 8 C 1.36603 * 106.84042 * 180.02562 * 7 6 5 9 9 C 1.47517 * 125.77328 * 179.97438 * 8 7 6 10 10 O 1.21594 * 120.00273 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99592 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99542 * 180.02562 * 11 9 8 13 13 H 1.08992 * 112.85264 * 26.91055 * 12 11 9 14 14 C 1.53781 * 113.61148 * 158.10897 * 12 11 9 15 15 C 1.53788 * 87.08141 * 89.19856 * 14 12 11 16 16 H 1.09005 * 113.61249 * 140.06214 * 15 14 12 17 17 N 1.46502 * 113.61316 * 270.88439 * 15 14 12 18 18 C 1.36936 * 119.99360 * 275.93447 * 17 15 14 19 19 H 1.07999 * 120.00771 * 359.72717 * 18 17 15 20 20 C 1.38819 * 119.99459 * 179.72668 * 18 17 15 21 21 N 1.31614 * 120.00045 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99712 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47232 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47039 * 119.99966 * 22 20 18 25 25 H 1.48499 * 109.46900 * 239.99511 * 22 20 18 26 26 C 1.53777 * 87.08159 * 25.43228 * 15 14 12 27 27 N 1.34404 * 108.45197 * 0.24494 * 8 7 6 28 28 N 1.28763 * 109.52444 * 359.58686 * 27 8 7 29 29 H 1.09011 * 109.47237 * 300.00574 * 1 2 3 30 30 H 1.09001 * 109.47293 * 59.99836 * 1 2 3 31 31 H 1.08995 * 109.47471 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47252 * 239.99364 * 2 1 3 33 33 H 1.09003 * 109.47099 * 60.00091 * 3 2 1 34 34 H 1.08992 * 109.47201 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47082 * 299.99784 * 3 2 1 36 36 H 1.08997 * 109.47259 * 54.99397 * 4 2 1 37 37 H 1.09001 * 109.47203 * 295.00220 * 4 2 1 38 38 H 1.09000 * 109.47031 * 60.00249 * 5 4 2 39 39 H 1.09001 * 109.47264 * 300.00284 * 5 4 2 40 40 H 1.08000 * 126.58837 * 0.02562 * 7 6 5 41 41 H 0.96999 * 120.00551 * 0.02562 * 11 9 8 42 42 H 1.09000 * 113.61786 * 334.65264 * 14 12 11 43 43 H 1.09001 * 113.61379 * 203.74186 * 14 12 11 44 44 H 0.96990 * 120.00100 * 95.66344 * 17 15 14 45 45 H 0.97000 * 119.99959 * 179.97438 * 21 20 18 46 46 H 1.09004 * 113.61804 * 89.11522 * 26 15 14 47 47 H 1.08995 * 113.61818 * 220.02029 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5647 -0.8311 1.1881 6 7 4.0531 -1.5212 2.3846 7 6 4.8311 -2.6216 2.4163 8 6 5.0416 -2.9196 3.7327 9 6 5.8400 -4.0498 4.2440 10 8 6.3793 -4.8140 3.4670 11 7 5.9708 -4.2359 5.5725 12 6 6.7641 -5.3580 6.0803 13 1 7.5441 -5.6729 5.3872 14 6 7.2644 -5.1568 7.5205 15 6 5.9511 -5.8088 7.9842 16 1 6.0746 -6.4866 8.8289 17 7 4.8574 -4.8532 8.1766 18 6 4.7455 -4.1696 9.3578 19 1 5.4608 -4.3380 10.1492 20 6 3.7125 -3.2599 9.5380 21 7 2.8410 -3.0542 8.5734 22 14 3.5602 -2.3268 11.1490 23 1 4.6566 -2.7355 12.0634 24 1 3.6518 -0.8680 10.8867 25 1 2.2508 -2.6353 11.7779 26 6 5.9148 -6.5203 6.6214 27 7 4.3934 -2.0124 4.4832 28 7 3.8006 -1.1645 3.7168 29 1 -0.3634 0.5140 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6052 -1.7197 1.2953 37 1 1.7515 -0.1583 2.1370 38 1 3.9994 0.1674 1.1422 39 1 3.8531 -1.3940 0.3004 40 1 5.2145 -3.1637 1.5645 41 1 5.5397 -3.6270 6.1924 42 1 7.3573 -4.1095 7.8082 43 1 8.1514 -5.7430 7.7605 44 1 4.2149 -4.7019 7.4659 45 1 2.1190 -2.4188 8.6995 46 1 6.4329 -7.4793 6.6155 47 1 4.9183 -6.5739 6.1831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022703907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:39 Heat of formation + Delta-G solvation = 81.650742 kcal Electronic energy + Delta-G solvation = -26987.167107 eV Core-core repulsion = 23207.917479 eV Total energy + Delta-G solvation = -3779.249628 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.02684 -39.56043 -37.76885 -37.44722 -34.33133 -33.50181 -32.41478 -30.87377 -29.85068 -29.33505 -27.57647 -25.19136 -24.89159 -24.51015 -23.62424 -21.98421 -21.75605 -20.49721 -19.89761 -18.69856 -17.86164 -17.05842 -16.38437 -16.11035 -15.67418 -15.36322 -14.85392 -14.71783 -14.47600 -14.39339 -14.28452 -13.86371 -13.81096 -13.33708 -13.11613 -13.01801 -12.67780 -12.39258 -12.10755 -11.92962 -11.75468 -11.65595 -11.46142 -11.31827 -11.17220 -11.07964 -10.89968 -10.84684 -10.72298 -10.26752 -10.18939 -10.09222 -9.80581 -9.60914 -9.47889 -9.13247 -8.82937 -8.43828 -6.92801 -5.71327 -3.02098 1.26479 2.01691 2.07827 3.47543 3.52983 3.55527 3.56320 3.64469 4.09016 4.30902 4.37169 4.50328 4.55138 4.62679 4.79762 4.87709 4.92340 5.11107 5.20741 5.21920 5.25375 5.29040 5.30651 5.44311 5.50813 5.55068 5.57567 5.59345 5.60296 5.79381 5.85281 5.88870 5.91366 5.98476 6.08427 6.20028 6.39244 6.43101 6.44640 6.68737 6.76107 6.93667 7.17579 7.78605 7.98150 8.27514 8.45782 8.63320 9.56890 10.12432 10.47111 11.49786 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.011283 B = 0.003267 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.017313 B = 8568.877671 C =10528.600057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.154 4.154 4 C -0.131 4.131 5 C 0.122 3.878 6 N -0.367 5.367 7 C 0.084 3.916 8 C -0.099 4.099 9 C 0.604 3.396 10 O -0.558 6.558 11 N -0.682 5.682 12 C 0.127 3.873 13 H 0.090 0.910 14 C -0.180 4.180 15 C 0.162 3.838 16 H 0.051 0.949 17 N -0.710 5.710 18 C -0.247 4.247 19 H 0.072 0.928 20 C -0.007 4.007 21 N -0.921 5.921 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.291 1.291 25 H -0.293 1.293 26 C -0.163 4.163 27 N -0.179 5.179 28 N -0.061 5.061 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.201 0.799 41 H 0.425 0.575 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.386 0.614 45 H 0.256 0.744 46 H 0.087 0.913 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.392 4.068 -20.026 20.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.211 4.211 4 C -0.170 4.170 5 C 0.001 3.999 6 N -0.152 5.152 7 C -0.073 4.073 8 C -0.239 4.239 9 C 0.388 3.612 10 O -0.436 6.436 11 N -0.334 5.334 12 C 0.021 3.979 13 H 0.108 0.892 14 C -0.221 4.221 15 C 0.051 3.949 16 H 0.069 0.931 17 N -0.351 5.351 18 C -0.378 4.378 19 H 0.090 0.910 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.220 1.220 26 C -0.202 4.202 27 N -0.053 5.053 28 N -0.042 5.042 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.217 0.783 41 H 0.265 0.735 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.221 0.779 45 H 0.066 0.934 46 H 0.106 0.894 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.036 4.631 -19.464 20.034 hybrid contribution -0.155 0.299 0.120 0.358 sum 0.881 4.930 -19.344 19.982 Atomic orbital electron populations 1.21829 0.94519 1.02089 1.02129 1.21053 0.96468 0.96349 0.97226 1.21954 1.01001 0.95828 1.02335 1.21993 0.92537 1.02458 0.99964 1.22113 0.96479 0.98417 0.82930 1.50617 1.35096 1.20340 1.09131 1.23276 0.94393 0.89706 0.99902 1.21544 1.09550 1.02345 0.90428 1.16789 0.79257 0.82264 0.82899 1.90737 1.49496 1.46436 1.56974 1.45766 1.51061 1.30244 1.06358 1.21740 0.93658 0.87062 0.95422 0.89206 1.24071 1.00283 1.03020 0.94731 1.21205 0.88511 0.91232 0.93959 0.93106 1.42264 1.29197 1.46620 1.17063 1.19203 1.09390 1.16553 0.92620 0.91029 1.24751 0.97851 1.00032 0.97767 1.69662 1.17040 1.38317 1.31800 0.86160 0.77257 0.79719 0.83251 1.20633 1.21842 1.21994 1.23709 1.00694 0.97429 0.98408 1.74896 1.04208 1.00369 1.25842 1.82075 1.20838 1.19073 0.82195 0.92291 0.92446 0.92497 0.90894 0.92137 0.92536 0.92447 0.90848 0.89686 0.88413 0.88054 0.78254 0.73499 0.90562 0.90076 0.77948 0.93439 0.89428 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.19 37.16 0.34 -0.57 16 2 C -0.09 -0.53 2.92 -90.62 -0.26 -0.80 16 3 C -0.15 -0.85 8.95 37.16 0.33 -0.52 16 4 C -0.13 -1.03 4.89 -26.73 -0.13 -1.16 16 5 C 0.12 0.92 6.29 -4.04 -0.03 0.89 16 6 N -0.37 -4.56 3.69 -61.06 -0.23 -4.79 16 7 C 0.08 1.10 11.27 -16.84 -0.19 0.91 16 8 C -0.10 -1.73 6.99 -83.55 -0.58 -2.31 16 9 C 0.60 11.34 7.82 -12.48 -0.10 11.24 16 10 O -0.56 -10.89 16.50 5.28 0.09 -10.80 16 11 N -0.68 -13.23 4.97 -54.06 -0.27 -13.49 16 12 C 0.13 2.24 4.28 -67.11 -0.29 1.95 16 13 H 0.09 1.51 7.54 -51.93 -0.39 1.12 16 14 C -0.18 -3.16 7.62 -25.91 -0.20 -3.36 16 15 C 0.16 3.24 4.53 -67.12 -0.30 2.94 16 16 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 17 N -0.71 -17.56 4.36 -52.63 -0.23 -17.79 16 18 C -0.25 -6.75 9.99 -15.06 -0.15 -6.90 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 21 N -0.92 -27.60 13.06 55.49 0.72 -26.87 16 22 Si 0.90 22.49 29.55 -169.99 -5.02 17.47 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 C -0.16 -2.84 7.58 -25.92 -0.20 -3.03 16 27 N -0.18 -3.52 12.04 32.85 0.40 -3.12 16 28 N -0.06 -1.05 13.65 60.35 0.82 -0.23 16 29 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.28 6.56 -51.93 -0.34 -0.07 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 0.63 6.56 -51.93 -0.34 0.29 16 39 H 0.10 0.46 8.08 -51.93 -0.42 0.04 16 40 H 0.20 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.42 9.24 6.90 -40.82 -0.28 8.96 16 42 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 43 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.39 10.23 7.07 -40.82 -0.29 9.94 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 47 H 0.07 1.30 8.13 -51.93 -0.42 0.88 16 LS Contribution 389.71 15.07 5.87 5.87 Total: -1.00 -33.11 389.71 -7.22 -40.33 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -7.53 Total: 14.46 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.85 Total: -1.03 kcal Atomic # 7 Polarization: -67.52 SS G_CDS: 1.22 Total: -66.30 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.11 -7.22 -40.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022703907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.984 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds