Wall clock time and date at job start Fri Apr 10 2020 18:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47437 * 2 1 4 4 C 1.53005 * 109.46920 * 119.99875 * 2 1 3 5 5 C 1.52996 * 109.47283 * 174.99898 * 4 2 1 6 6 N 1.46503 * 109.47344 * 179.97438 * 5 4 2 7 7 C 1.34807 * 126.59037 * 124.99701 * 6 5 4 8 8 C 1.36603 * 106.84042 * 180.02562 * 7 6 5 9 9 C 1.47517 * 125.77328 * 179.97438 * 8 7 6 10 10 O 1.21594 * 120.00273 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99592 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99542 * 180.02562 * 11 9 8 13 13 H 1.08992 * 112.85264 * 26.91055 * 12 11 9 14 14 C 1.53781 * 113.61148 * 158.10897 * 12 11 9 15 15 C 1.53788 * 87.08141 * 89.19856 * 14 12 11 16 16 H 1.09005 * 113.61249 * 140.06214 * 15 14 12 17 17 N 1.46502 * 113.61316 * 270.88439 * 15 14 12 18 18 C 1.36936 * 119.99360 * 275.93447 * 17 15 14 19 19 H 1.07999 * 120.00771 * 359.72717 * 18 17 15 20 20 C 1.38819 * 119.99459 * 179.72668 * 18 17 15 21 21 N 1.31614 * 120.00045 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99712 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47232 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47039 * 119.99966 * 22 20 18 25 25 H 1.48499 * 109.46900 * 239.99511 * 22 20 18 26 26 C 1.53777 * 87.08159 * 25.43228 * 15 14 12 27 27 N 1.34404 * 108.45197 * 0.24494 * 8 7 6 28 28 N 1.28763 * 109.52444 * 359.58686 * 27 8 7 29 29 H 1.09011 * 109.47237 * 300.00574 * 1 2 3 30 30 H 1.09001 * 109.47293 * 59.99836 * 1 2 3 31 31 H 1.08995 * 109.47471 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47252 * 239.99364 * 2 1 3 33 33 H 1.09003 * 109.47099 * 60.00091 * 3 2 1 34 34 H 1.08992 * 109.47201 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47082 * 299.99784 * 3 2 1 36 36 H 1.08997 * 109.47259 * 54.99397 * 4 2 1 37 37 H 1.09001 * 109.47203 * 295.00220 * 4 2 1 38 38 H 1.09000 * 109.47031 * 60.00249 * 5 4 2 39 39 H 1.09001 * 109.47264 * 300.00284 * 5 4 2 40 40 H 1.08000 * 126.58837 * 0.02562 * 7 6 5 41 41 H 0.96999 * 120.00551 * 0.02562 * 11 9 8 42 42 H 1.09000 * 113.61786 * 334.65264 * 14 12 11 43 43 H 1.09001 * 113.61379 * 203.74186 * 14 12 11 44 44 H 0.96990 * 120.00100 * 95.66344 * 17 15 14 45 45 H 0.97000 * 119.99959 * 179.97438 * 21 20 18 46 46 H 1.09004 * 113.61804 * 89.11522 * 26 15 14 47 47 H 1.08995 * 113.61818 * 220.02029 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5647 -0.8311 1.1881 6 7 4.0531 -1.5212 2.3846 7 6 4.8311 -2.6216 2.4163 8 6 5.0416 -2.9196 3.7327 9 6 5.8400 -4.0498 4.2440 10 8 6.3793 -4.8140 3.4670 11 7 5.9708 -4.2359 5.5725 12 6 6.7641 -5.3580 6.0803 13 1 7.5441 -5.6729 5.3872 14 6 7.2644 -5.1568 7.5205 15 6 5.9511 -5.8088 7.9842 16 1 6.0746 -6.4866 8.8289 17 7 4.8574 -4.8532 8.1766 18 6 4.7455 -4.1696 9.3578 19 1 5.4608 -4.3380 10.1492 20 6 3.7125 -3.2599 9.5380 21 7 2.8410 -3.0542 8.5734 22 14 3.5602 -2.3268 11.1490 23 1 4.6566 -2.7355 12.0634 24 1 3.6518 -0.8680 10.8867 25 1 2.2508 -2.6353 11.7779 26 6 5.9148 -6.5203 6.6214 27 7 4.3934 -2.0124 4.4832 28 7 3.8006 -1.1645 3.7168 29 1 -0.3634 0.5140 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6052 -1.7197 1.2953 37 1 1.7515 -0.1583 2.1370 38 1 3.9994 0.1674 1.1422 39 1 3.8531 -1.3940 0.3004 40 1 5.2145 -3.1637 1.5645 41 1 5.5397 -3.6270 6.1924 42 1 7.3573 -4.1095 7.8082 43 1 8.1514 -5.7430 7.7605 44 1 4.2149 -4.7019 7.4659 45 1 2.1190 -2.4188 8.6995 46 1 6.4329 -7.4793 6.6155 47 1 4.9183 -6.5739 6.1831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022703907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:38 Heat of formation + Delta-G solvation = 58.933408 kcal Electronic energy + Delta-G solvation = -26988.152204 eV Core-core repulsion = 23207.917479 eV Total energy + Delta-G solvation = -3780.234725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.19889 -41.01663 -39.19196 -38.13366 -35.45172 -35.23491 -33.97677 -32.09780 -31.64287 -30.30155 -28.03931 -26.73102 -26.25947 -25.61280 -25.24604 -23.47106 -22.78161 -21.45167 -20.82264 -20.21021 -19.24730 -18.87061 -17.34440 -17.25973 -17.01258 -16.61534 -16.33310 -15.98241 -15.67495 -15.59837 -15.41414 -15.04858 -14.96556 -14.71588 -14.66612 -13.99433 -13.38098 -13.34761 -13.26849 -13.15391 -13.05198 -12.80210 -12.78001 -12.59688 -12.52557 -12.08964 -12.07048 -12.01783 -11.87875 -11.70768 -11.68931 -11.54676 -11.17205 -11.13952 -11.04678 -10.78861 -10.35683 -9.89084 -8.94110 -7.87515 -5.17095 0.18544 0.66538 1.16010 1.48713 1.49694 1.59133 2.20072 2.27851 2.59316 3.24135 3.34914 3.44152 3.71453 3.74130 3.79638 3.89483 3.92849 3.99597 4.00578 4.04264 4.24283 4.25042 4.35944 4.42116 4.45196 4.64643 4.73260 4.80966 4.87813 4.90837 4.94146 4.98497 5.01007 5.03689 5.06527 5.09586 5.28118 5.28175 5.40434 5.43025 5.47646 5.54132 5.56741 5.73474 6.32690 6.52041 6.96892 7.17779 7.38864 8.14135 8.36853 9.34008 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.011283 B = 0.003267 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.017313 B = 8568.877671 C =10528.600057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.084 4.084 3 C -0.155 4.155 4 C -0.128 4.128 5 C 0.110 3.890 6 N -0.348 5.348 7 C 0.112 3.888 8 C -0.133 4.133 9 C 0.604 3.396 10 O -0.568 6.568 11 N -0.693 5.693 12 C 0.123 3.877 13 H 0.105 0.895 14 C -0.162 4.162 15 C 0.142 3.858 16 H 0.057 0.943 17 N -0.721 5.721 18 C -0.239 4.239 19 H 0.077 0.923 20 C -0.068 4.068 21 N -0.957 5.957 22 Si 0.966 3.034 23 H -0.265 1.265 24 H -0.299 1.299 25 H -0.297 1.297 26 C -0.148 4.148 27 N -0.228 5.228 28 N -0.094 5.094 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.114 0.886 39 H 0.147 0.853 40 H 0.246 0.754 41 H 0.411 0.589 42 H 0.051 0.949 43 H 0.120 0.880 44 H 0.373 0.627 45 H 0.247 0.753 46 H 0.126 0.874 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.046 3.335 -22.059 22.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.103 4.103 3 C -0.212 4.212 4 C -0.166 4.166 5 C -0.008 4.008 6 N -0.132 5.132 7 C -0.046 4.046 8 C -0.274 4.274 9 C 0.389 3.611 10 O -0.448 6.448 11 N -0.342 5.342 12 C 0.019 3.981 13 H 0.123 0.877 14 C -0.203 4.203 15 C 0.032 3.968 16 H 0.075 0.925 17 N -0.362 5.362 18 C -0.371 4.371 19 H 0.095 0.905 20 C -0.262 4.262 21 N -0.606 5.606 22 Si 0.796 3.204 23 H -0.190 1.190 24 H -0.226 1.226 25 H -0.224 1.224 26 C -0.187 4.187 27 N -0.100 5.100 28 N -0.074 5.074 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.132 0.868 39 H 0.165 0.835 40 H 0.262 0.738 41 H 0.249 0.751 42 H 0.070 0.930 43 H 0.138 0.862 44 H 0.206 0.794 45 H 0.056 0.944 46 H 0.144 0.856 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.724 3.886 -21.496 22.014 hybrid contribution -0.647 0.488 0.635 1.030 sum 2.077 4.374 -20.861 21.415 Atomic orbital electron populations 1.21859 0.95082 1.01881 1.02036 1.21024 0.95957 0.96473 0.96803 1.21966 1.01648 0.95493 1.02077 1.21940 0.92954 1.01713 0.99998 1.22682 0.96062 0.99776 0.82281 1.50938 1.33591 1.19806 1.08912 1.23867 0.92443 0.88868 0.99425 1.21668 1.10926 1.02629 0.92138 1.16973 0.79066 0.82500 0.82565 1.90706 1.50174 1.46978 1.56915 1.45895 1.51299 1.30496 1.06554 1.21889 0.93839 0.86690 0.95727 0.87664 1.23965 1.00240 1.01852 0.94256 1.21516 0.88369 0.91156 0.95709 0.92516 1.42394 1.30445 1.47415 1.15940 1.19540 1.08517 1.15673 0.93356 0.90511 1.25478 0.98259 1.01698 1.00721 1.69829 1.17812 1.39325 1.33682 0.85181 0.77228 0.77868 0.80093 1.18981 1.22631 1.22413 1.23700 1.00111 0.98904 0.95942 1.74869 1.05681 1.01713 1.27768 1.81962 1.21687 1.19457 0.84296 0.93695 0.91260 0.92782 0.88578 0.93688 0.91503 0.91464 0.91826 0.92527 0.86849 0.83526 0.73843 0.75101 0.92975 0.86184 0.79433 0.94376 0.85580 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.19 71.98 0.66 -1.08 16 2 C -0.08 -0.81 2.92 -10.79 -0.03 -0.84 16 3 C -0.15 -1.44 8.95 71.98 0.64 -0.79 16 4 C -0.13 -1.88 4.89 30.59 0.15 -1.73 16 5 C 0.11 1.37 6.29 86.38 0.54 1.92 16 6 N -0.35 -8.21 3.69 -347.10 -1.28 -9.49 16 7 C 0.11 2.72 11.27 83.85 0.95 3.66 16 8 C -0.13 -4.67 6.99 40.82 0.29 -4.39 16 9 C 0.60 22.69 7.82 86.69 0.68 23.37 16 10 O -0.57 -21.46 16.50 -4.01 -0.07 -21.53 16 11 N -0.69 -27.25 4.97 -443.20 -2.20 -29.46 16 12 C 0.12 4.20 4.28 45.52 0.19 4.40 16 13 H 0.11 3.29 7.54 -2.39 -0.02 3.27 16 14 C -0.16 -5.46 7.62 31.12 0.24 -5.22 16 15 C 0.14 5.54 4.53 45.52 0.21 5.75 16 16 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 17 N -0.72 -36.34 4.36 -320.43 -1.40 -37.74 16 18 C -0.24 -13.25 9.99 84.04 0.84 -12.41 16 19 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 20 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 21 N -0.96 -59.61 13.06 21.65 0.28 -59.33 16 22 Si 0.97 47.28 29.55 68.60 2.03 49.31 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 25 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 26 C -0.15 -4.90 7.58 31.12 0.24 -4.66 16 27 N -0.23 -9.33 12.04 -49.99 -0.60 -9.93 16 28 N -0.09 -3.32 13.65 37.02 0.51 -2.81 16 29 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.07 0.48 6.56 -2.39 -0.02 0.46 16 35 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.11 1.15 6.56 -2.39 -0.02 1.13 16 39 H 0.15 0.59 8.08 -2.39 -0.02 0.57 16 40 H 0.25 3.48 8.06 -2.91 -0.02 3.45 16 41 H 0.41 18.73 6.90 -92.71 -0.64 18.09 16 42 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 44 H 0.37 20.56 7.07 -92.72 -0.66 19.90 16 45 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 46 H 0.13 3.20 8.14 -2.38 -0.02 3.18 16 47 H 0.05 1.83 8.13 -2.39 -0.02 1.81 16 Total: -1.00 -75.79 389.71 3.01 -72.78 By element: Atomic # 1 Polarization: 44.05 SS G_CDS: -0.31 Total: 43.74 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 6.06 Total: 4.46 kcal Atomic # 7 Polarization: -144.06 SS G_CDS: -4.70 Total: -148.76 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.07 Total: -21.53 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -75.79 3.01 -72.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022703907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.714 kcal (2) G-P(sol) polarization free energy of solvation -75.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds