Wall clock time and date at job start Fri Apr 10 2020 18:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46900 * 110.99821 * 2 1 4 4 C 1.46900 * 110.99913 * 123.95492 * 2 1 3 5 5 C 1.52994 * 109.47280 * 66.04087 * 4 2 1 6 6 N 1.46507 * 109.47127 * 179.97438 * 5 4 2 7 7 C 1.34253 * 125.75062 * 125.00126 * 6 5 4 8 8 C 1.38045 * 107.41663 * 179.97438 * 7 6 5 9 9 C 1.47431 * 126.41727 * 180.02562 * 8 7 6 10 10 O 1.21604 * 119.99956 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99672 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99646 * 180.02562 * 11 9 8 13 13 H 1.09004 * 112.84950 * 332.68543 * 12 11 9 14 14 C 1.53779 * 113.61778 * 103.99282 * 12 11 9 15 15 C 1.53778 * 87.08260 * 89.11807 * 14 12 11 16 16 H 1.08993 * 113.69225 * 139.99781 * 15 14 12 17 17 N 1.46510 * 113.61023 * 270.88529 * 15 14 12 18 18 C 1.36934 * 119.99552 * 183.70916 * 17 15 14 19 19 H 1.07999 * 120.00299 * 0.02562 * 18 17 15 20 20 C 1.38811 * 119.99428 * 180.02562 * 18 17 15 21 21 N 1.31622 * 119.99855 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00300 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47148 * 90.00152 * 22 20 18 24 24 H 1.48502 * 109.47022 * 209.99649 * 22 20 18 25 25 H 1.48490 * 109.47115 * 329.99888 * 22 20 18 26 26 C 1.53779 * 87.08234 * 25.43301 * 15 14 12 27 27 C 1.41288 * 107.16865 * 0.02562 * 8 7 6 28 28 N 1.30446 * 108.02482 * 359.97438 * 27 8 7 29 29 H 1.09007 * 109.46879 * 296.04960 * 1 2 3 30 30 H 1.08992 * 109.47030 * 56.04479 * 1 2 3 31 31 H 1.08996 * 109.47156 * 176.05324 * 1 2 3 32 32 H 1.09003 * 109.46314 * 183.95511 * 3 2 1 33 33 H 1.08994 * 109.47124 * 303.94784 * 3 2 1 34 34 H 1.08997 * 109.47551 * 63.95933 * 3 2 1 35 35 H 1.09007 * 109.46898 * 306.04287 * 4 2 1 36 36 H 1.09003 * 109.46922 * 186.04660 * 4 2 1 37 37 H 1.09007 * 109.46992 * 60.00257 * 5 4 2 38 38 H 1.09003 * 109.47610 * 300.00151 * 5 4 2 39 39 H 1.07997 * 126.29742 * 0.26473 * 7 6 5 40 40 H 0.96993 * 120.00484 * 359.97438 * 11 9 8 41 41 H 1.09004 * 113.61447 * 203.66435 * 14 12 11 42 42 H 1.09005 * 113.61303 * 334.56488 * 14 12 11 43 43 H 0.96997 * 119.99930 * 3.70808 * 17 15 14 44 44 H 0.96995 * 120.00151 * 179.97438 * 21 20 18 45 45 H 1.08993 * 113.61523 * 220.02443 * 26 15 14 46 46 H 1.08995 * 113.68837 * 89.12786 * 26 15 14 47 47 H 1.08011 * 125.99185 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6314 -2.2426 0.9704 6 7 2.1570 -3.0066 2.1046 7 6 1.4401 -3.8028 2.9136 8 6 2.3081 -4.3323 3.8474 9 6 1.9606 -5.2632 4.9366 10 8 0.8111 -5.6352 5.0748 11 7 2.9167 -5.7009 5.7796 12 6 2.5714 -6.6263 6.8616 13 1 1.5366 -6.5271 7.1893 14 6 2.9968 -8.0787 6.5892 15 6 4.3407 -7.7259 7.2481 16 1 4.7354 -8.5150 7.8879 17 7 5.3362 -7.2045 6.3079 18 6 6.6037 -6.9199 6.7410 19 1 6.8697 -7.0801 7.7754 20 6 7.5466 -6.4254 5.8504 21 7 8.7648 -6.1514 6.2666 22 14 7.0867 -6.1490 4.0611 23 1 6.5668 -4.7683 3.8913 24 1 8.2874 -6.3342 3.2071 25 1 6.0405 -7.1244 3.6625 26 6 3.5860 -6.6288 8.0173 27 6 3.5920 -3.8151 3.5637 28 7 3.4907 -3.0295 2.5273 29 1 -0.3633 0.4513 0.9233 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3633 -1.0252 -0.0707 32 1 3.0828 1.3431 -0.0709 33 1 1.5899 1.9163 -0.8524 34 1 1.7045 1.8724 0.9233 35 1 1.5611 -0.3872 2.0628 36 1 3.0798 -0.6611 1.1756 37 1 2.0658 -2.6214 0.0452 38 1 0.5471 -2.3475 0.9324 39 1 0.3801 -3.9975 2.8437 40 1 3.8334 -5.4038 5.6696 41 1 2.4175 -8.8151 7.1463 42 1 3.0797 -8.3179 5.5290 43 1 5.0973 -7.0610 5.3789 44 1 9.4239 -5.8062 5.6442 45 1 4.1445 -5.6975 8.1099 46 1 3.1674 -6.9674 8.9650 47 1 4.4986 -4.0327 4.1090 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022838421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:42 Heat of formation + Delta-G solvation = 68.968767 kcal Electronic energy + Delta-G solvation = -27146.654625 eV Core-core repulsion = 23366.855065 eV Total energy + Delta-G solvation = -3779.799559 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.51784 -40.98629 -39.17422 -38.65751 -35.52190 -34.82941 -33.93210 -32.45093 -31.49599 -30.06785 -28.55760 -26.72056 -26.33570 -25.71571 -24.63562 -23.21187 -22.62713 -21.65332 -21.05658 -20.51230 -19.45358 -18.98514 -17.38712 -17.01676 -16.99272 -16.56472 -16.34316 -16.20785 -16.01559 -15.79951 -15.63184 -15.38872 -15.00489 -14.77063 -14.69084 -14.42749 -13.96341 -13.80155 -13.44248 -13.30866 -13.19919 -13.06282 -12.79659 -12.73230 -12.61433 -12.55972 -12.42654 -12.11341 -11.90123 -11.86905 -11.78071 -11.06117 -10.93327 -10.85506 -10.71518 -10.09108 -9.71665 -9.50034 -9.27687 -8.01087 -5.34630 0.45845 1.00041 1.21886 1.34711 1.39322 1.45651 2.29735 2.39306 2.46389 2.85937 3.29557 3.34473 3.54481 3.69560 3.75853 3.78055 3.82166 3.90602 4.03244 4.11208 4.20397 4.23919 4.24973 4.38172 4.42506 4.54812 4.59272 4.60618 4.73752 4.77311 4.90036 4.93656 4.95299 4.99642 5.00479 5.06830 5.22647 5.27023 5.38161 5.67758 5.73357 5.85021 5.85807 5.94940 6.24049 6.37818 6.60528 7.08519 7.24939 7.84820 8.02742 9.20254 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.013712 B = 0.003328 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.446707 B = 8412.368973 C =10016.648453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.553 5.553 3 C 0.024 3.976 4 C 0.050 3.950 5 C 0.130 3.870 6 N -0.353 5.353 7 C 0.147 3.853 8 C -0.316 4.316 9 C 0.597 3.403 10 O -0.581 6.581 11 N -0.706 5.706 12 C 0.127 3.873 13 H 0.102 0.898 14 C -0.148 4.148 15 C 0.145 3.855 16 H 0.059 0.941 17 N -0.736 5.736 18 C -0.223 4.223 19 H 0.063 0.937 20 C -0.055 4.055 21 N -0.980 5.980 22 Si 0.932 3.068 23 H -0.259 1.259 24 H -0.303 1.303 25 H -0.261 1.261 26 C -0.162 4.162 27 C 0.071 3.929 28 N -0.315 5.315 29 H 0.028 0.972 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.027 0.973 35 H 0.036 0.964 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.222 0.778 40 H 0.402 0.598 41 H 0.124 0.876 42 H 0.056 0.944 43 H 0.363 0.637 44 H 0.257 0.743 45 H 0.056 0.944 46 H 0.117 0.883 47 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.682 10.649 -11.423 26.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.277 5.277 3 C -0.124 4.124 4 C -0.079 4.079 5 C 0.011 3.989 6 N -0.132 5.132 7 C -0.006 4.006 8 C -0.331 4.331 9 C 0.386 3.614 10 O -0.463 6.463 11 N -0.356 5.356 12 C 0.022 3.978 13 H 0.120 0.880 14 C -0.187 4.187 15 C 0.036 3.964 16 H 0.077 0.923 17 N -0.379 5.379 18 C -0.354 4.354 19 H 0.081 0.919 20 C -0.247 4.247 21 N -0.631 5.631 22 Si 0.760 3.240 23 H -0.184 1.184 24 H -0.230 1.230 25 H -0.186 1.186 26 C -0.203 4.203 27 C -0.116 4.116 28 N -0.135 5.135 29 H 0.047 0.953 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.045 0.955 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.152 0.848 39 H 0.238 0.762 40 H 0.239 0.761 41 H 0.143 0.857 42 H 0.075 0.925 43 H 0.197 0.803 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.135 0.865 47 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -21.555 11.053 -12.559 27.286 hybrid contribution 0.621 0.227 0.378 0.762 sum -20.934 11.280 -12.181 26.718 Atomic orbital electron populations 1.22623 0.85807 1.03585 1.01470 1.61937 1.09447 1.14834 1.41529 1.22429 1.00950 0.87722 1.01323 1.22198 1.01038 0.92389 0.92272 1.22092 1.01168 0.90145 0.85522 1.48772 1.05132 1.34721 1.24549 1.23377 0.99515 0.89514 0.88202 1.20306 0.94380 1.12809 1.05595 1.17397 0.84369 0.79084 0.80547 1.90693 1.20371 1.60824 1.74428 1.45768 1.11753 1.47229 1.30834 1.21830 0.99343 0.89157 0.87511 0.87977 1.23733 0.96492 0.97302 1.01191 1.21464 0.88058 0.94876 0.91971 0.92319 1.42567 1.08788 1.78636 1.07924 1.18987 0.87152 1.33869 0.95391 0.91921 1.25343 0.95541 1.02250 1.01588 1.69854 1.04711 1.52676 1.35849 0.85791 0.77289 0.79487 0.81420 1.18403 1.22979 1.18626 1.23933 0.97407 1.00975 0.97940 1.24218 0.98276 0.94458 0.94657 1.77155 0.97102 1.23540 1.15720 0.95294 0.89916 0.89805 0.91577 0.89547 0.95469 0.94572 0.91014 0.87928 0.84814 0.76194 0.76139 0.85744 0.92515 0.80297 0.93422 0.92508 0.86508 0.80441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.32 127.69 1.19 1.30 16 2 N -0.55 -7.21 5.02 -948.84 -4.76 -11.97 16 3 C 0.02 0.28 9.57 127.69 1.22 1.50 16 4 C 0.05 0.78 5.13 86.30 0.44 1.23 16 5 C 0.13 1.83 6.41 86.38 0.55 2.39 16 6 N -0.35 -7.74 3.65 -346.29 -1.26 -9.00 16 7 C 0.15 3.24 11.25 84.28 0.95 4.19 16 8 C -0.32 -9.23 6.13 -20.15 -0.12 -9.36 16 9 C 0.60 19.49 7.81 86.67 0.68 20.17 16 10 O -0.58 -20.75 16.54 -4.04 -0.07 -20.82 16 11 N -0.71 -23.08 4.94 -443.29 -2.19 -25.27 16 12 C 0.13 3.79 4.28 45.52 0.19 3.99 16 13 H 0.10 2.91 7.55 -2.38 -0.02 2.90 16 14 C -0.15 -4.30 7.57 31.12 0.24 -4.06 16 15 C 0.14 5.14 4.54 45.51 0.21 5.35 16 16 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 17 N -0.74 -32.46 4.22 -320.44 -1.35 -33.81 16 18 C -0.22 -12.13 10.47 84.03 0.88 -11.25 16 19 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 20 C -0.06 -3.17 5.50 84.86 0.47 -2.71 16 21 N -0.98 -61.60 13.97 21.65 0.30 -61.30 16 22 Si 0.93 44.15 27.74 68.60 1.90 46.05 16 23 H -0.26 -11.36 6.37 99.48 0.63 -10.72 16 24 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 25 H -0.26 -11.56 6.52 99.48 0.65 -10.91 16 26 C -0.16 -4.95 7.61 31.12 0.24 -4.71 16 27 C 0.07 2.24 11.50 85.65 0.99 3.22 16 28 N -0.32 -9.36 12.33 -56.27 -0.69 -10.05 16 29 H 0.03 0.25 8.14 -2.38 -0.02 0.24 16 30 H 0.08 0.55 8.12 -2.39 -0.02 0.53 16 31 H 0.08 0.47 6.47 -2.39 -0.02 0.46 16 32 H 0.07 0.85 8.12 -2.39 -0.02 0.83 16 33 H 0.09 0.76 8.12 -2.39 -0.02 0.74 16 34 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.04 0.61 8.12 -2.38 -0.02 0.59 16 36 H 0.07 1.45 8.06 -2.39 -0.02 1.43 16 37 H 0.10 1.44 8.14 -2.38 -0.02 1.43 16 38 H 0.13 0.96 6.47 -2.39 -0.02 0.94 16 39 H 0.22 3.24 8.06 -2.91 -0.02 3.21 16 40 H 0.40 14.04 6.13 -92.71 -0.57 13.47 16 41 H 0.12 2.80 8.14 -2.38 -0.02 2.78 16 42 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.36 15.74 4.83 -92.71 -0.45 15.29 16 44 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 45 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 47 H 0.18 5.85 6.77 -2.91 -0.02 5.83 16 Total: -1.00 -72.61 383.83 -0.17 -72.78 By element: Atomic # 1 Polarization: 42.34 SS G_CDS: -0.17 Total: 42.17 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 8.12 Total: 11.23 kcal Atomic # 7 Polarization: -141.46 SS G_CDS: -9.96 Total: -151.42 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.07 Total: -20.82 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.90 Total: 46.05 kcal Total: -72.61 -0.17 -72.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022838421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.750 kcal (2) G-P(sol) polarization free energy of solvation -72.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds