Wall clock time and date at job start Fri Apr 10 2020 18:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99939 * 2 1 4 4 H 1.48495 * 109.47383 * 269.99699 * 3 2 1 5 5 H 1.48494 * 109.47236 * 30.00166 * 3 2 1 6 6 H 1.48501 * 109.47108 * 150.00268 * 3 2 1 7 7 C 1.38817 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99355 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00258 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00159 * 180.02562 * 9 7 2 11 11 H 1.08994 * 112.85212 * 23.79818 * 10 9 7 12 12 C 1.53782 * 113.61505 * 154.99783 * 10 9 7 13 13 C 1.53786 * 87.08204 * 89.11354 * 12 10 9 14 14 H 1.09000 * 113.61564 * 140.06569 * 13 12 10 15 15 N 1.46504 * 113.61503 * 270.88512 * 13 12 10 16 16 C 1.34774 * 119.99952 * 203.47001 * 15 13 12 17 17 O 1.21280 * 119.99957 * 359.97438 * 16 15 13 18 18 C 1.50695 * 119.99696 * 179.97438 * 16 15 13 19 19 C 1.53129 * 109.51958 * 180.02562 * 18 16 15 20 20 C 1.53036 * 109.27794 * 182.37968 * 19 18 16 21 21 N 1.46857 * 109.52217 * 59.17637 * 20 19 18 22 22 C 1.46898 * 110.99601 * 174.16277 * 21 20 19 23 23 C 1.52997 * 109.47751 * 67.69830 * 22 21 20 24 24 C 1.52997 * 117.52272 * 116.51936 * 23 22 21 25 25 C 1.52995 * 117.50237 * 185.15407 * 23 22 21 26 26 C 1.46842 * 111.19802 * 298.25818 * 21 20 19 27 27 C 1.53032 * 109.52439 * 61.74362 * 26 21 20 28 28 C 1.53787 * 87.17044 * 25.47346 * 13 12 10 29 29 H 0.97000 * 119.99818 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99687 * 359.97438 * 9 7 2 31 31 H 1.08993 * 113.61473 * 334.56534 * 12 10 9 32 32 H 1.09004 * 113.68669 * 203.67023 * 12 10 9 33 33 H 0.96993 * 119.99821 * 23.46810 * 15 13 12 34 34 H 1.08993 * 109.52691 * 300.12523 * 18 16 15 35 35 H 1.08995 * 109.50454 * 62.44036 * 19 18 16 36 36 H 1.09004 * 109.49854 * 302.31578 * 19 18 16 37 37 H 1.08997 * 109.46258 * 299.16244 * 20 19 18 38 38 H 1.08995 * 109.45523 * 179.18445 * 20 19 18 39 39 H 1.09005 * 109.47123 * 307.69751 * 22 21 20 40 40 H 1.09007 * 109.46872 * 187.69970 * 22 21 20 41 41 H 1.09003 * 115.54427 * 330.82831 * 23 22 21 42 42 H 1.08998 * 117.50240 * 214.97841 * 24 23 22 43 43 H 1.09009 * 117.49557 * 359.97438 * 24 23 22 44 44 H 1.08998 * 117.49923 * 359.97438 * 25 23 22 45 45 H 1.09004 * 117.49452 * 144.97640 * 25 23 22 46 46 H 1.09008 * 109.46149 * 181.75891 * 26 21 20 47 47 H 1.08999 * 109.46533 * 301.72262 * 26 21 20 48 48 H 1.09000 * 109.50370 * 180.87797 * 27 26 21 49 49 H 1.09003 * 109.54062 * 60.77964 * 27 26 21 50 50 H 1.08998 * 113.61547 * 89.07901 * 28 13 12 51 51 H 1.09007 * 113.60986 * 219.97446 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 -0.0011 11 1 3.5280 -3.2965 -0.4076 12 6 5.5262 -2.3653 -0.5960 13 6 6.0124 -2.0245 0.8226 14 1 6.9636 -2.4895 1.0817 15 7 5.9781 -0.5917 1.1264 16 6 6.7771 -0.0874 2.0875 17 8 7.5241 -0.8197 2.7012 18 6 6.7422 1.3865 2.3995 19 6 7.7381 1.6958 3.5209 20 6 7.6556 3.1826 3.8740 21 7 6.2899 3.5099 4.3036 22 6 6.2067 4.8963 4.7820 23 6 6.4202 5.8546 3.6086 24 6 5.2578 6.7722 3.2247 25 6 6.4908 7.3504 3.9219 26 6 5.3217 3.2657 3.2269 27 6 5.3345 1.7815 2.8545 28 6 4.7879 -2.7944 1.3449 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3621 0.0004 31 1 5.6414 -1.5460 -1.3055 32 1 5.9137 -3.3111 -0.9749 33 1 5.3805 -0.0062 0.6358 34 1 7.0100 1.9540 1.5083 35 1 8.7477 1.4566 3.1872 36 1 7.4935 1.0989 4.3996 37 1 7.9136 3.7786 2.9987 38 1 8.3530 3.4030 4.6821 39 1 6.9756 5.0674 5.5355 40 1 5.2238 5.0712 5.2198 41 1 7.0516 5.4785 2.8036 42 1 5.1244 7.0000 2.1671 43 1 4.3402 6.6931 3.8079 44 1 6.3847 7.6519 4.9640 45 1 7.1690 7.9585 3.3232 46 1 4.3242 3.5467 3.5649 47 1 5.5906 3.8614 2.3546 48 1 4.6271 1.6034 2.0446 49 1 5.0519 1.1854 3.7222 50 1 4.9727 -3.8579 1.4963 51 1 4.3073 -2.3212 2.2013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022955753.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:47 Heat of formation + Delta-G solvation = 26.980094 kcal Electronic energy + Delta-G solvation = -28613.383169 eV Core-core repulsion = 24935.303188 eV Total energy + Delta-G solvation = -3678.079981 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.42233 -39.36629 -38.13045 -36.77344 -33.77706 -33.44410 -32.47165 -30.89459 -30.50850 -27.48809 -25.24013 -24.82446 -23.87291 -23.30626 -22.57184 -22.31125 -21.35427 -20.21537 -19.46389 -19.10351 -17.64685 -17.04822 -16.48758 -15.83849 -15.28614 -15.21998 -15.03075 -14.84529 -14.60298 -14.52948 -13.97814 -13.85726 -13.51267 -13.20896 -13.10740 -12.83779 -12.57925 -12.25291 -12.18494 -12.05534 -11.93490 -11.86775 -11.74449 -11.32316 -11.29637 -11.07168 -10.95778 -10.90342 -10.65053 -10.46863 -10.31108 -10.20418 -9.99505 -9.85163 -9.64354 -9.47470 -8.99897 -8.68202 -8.42312 -7.40853 -5.87789 -3.25042 2.81608 3.08806 3.24780 3.31660 3.38035 3.45443 3.81330 4.38637 4.43914 4.59276 4.62980 4.69413 4.74065 4.77906 4.92370 5.02240 5.11227 5.12488 5.18029 5.24689 5.28081 5.34405 5.36259 5.41604 5.45344 5.50112 5.56195 5.61680 5.62811 5.72164 5.76126 5.78983 5.82313 5.88274 5.94749 6.01910 6.05362 6.14410 6.16954 6.22521 6.33729 6.45159 6.59954 6.70420 6.93602 6.96695 6.97723 7.73634 7.88714 8.30830 8.43822 9.06440 9.78332 9.96434 11.30076 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.011262 B = 0.004426 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.721855 B = 6324.997600 C = 8363.033201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.879 3.121 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.247 4.247 8 H 0.094 0.906 9 N -0.727 5.727 10 C 0.170 3.830 11 H 0.075 0.925 12 C -0.168 4.168 13 C 0.120 3.880 14 H 0.092 0.908 15 N -0.705 5.705 16 C 0.522 3.478 17 O -0.546 6.546 18 C -0.108 4.108 19 C -0.094 4.094 20 C 0.055 3.945 21 N -0.532 5.532 22 C 0.086 3.914 23 C -0.192 4.192 24 C -0.177 4.177 25 C -0.176 4.176 26 C 0.060 3.940 27 C -0.123 4.123 28 C -0.184 4.184 29 H 0.261 0.739 30 H 0.354 0.646 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.399 0.601 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.078 0.922 47 H 0.039 0.961 48 H 0.086 0.914 49 H 0.079 0.921 50 H 0.081 0.919 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.786 9.585 5.620 19.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.189 4.189 3 Si 0.711 3.289 4 H -0.211 1.211 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.376 4.376 8 H 0.112 0.888 9 N -0.369 5.369 10 C 0.058 3.942 11 H 0.093 0.907 12 C -0.208 4.208 13 C 0.015 3.985 14 H 0.110 0.890 15 N -0.358 5.358 16 C 0.308 3.692 17 O -0.424 6.424 18 C -0.130 4.130 19 C -0.132 4.132 20 C -0.073 4.073 21 N -0.255 5.255 22 C -0.042 4.042 23 C -0.212 4.212 24 C -0.214 4.214 25 C -0.213 4.213 26 C -0.068 4.068 27 C -0.161 4.161 28 C -0.226 4.226 29 H 0.071 0.929 30 H 0.188 0.812 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.237 0.763 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.109 0.891 46 H 0.097 0.903 47 H 0.057 0.943 48 H 0.104 0.896 49 H 0.098 0.902 50 H 0.099 0.901 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.898 8.688 6.430 19.224 hybrid contribution 0.379 2.139 -1.015 2.398 sum 16.277 10.827 5.415 20.285 Atomic orbital electron populations 1.69686 1.05051 1.25873 1.57020 1.24686 0.95249 0.97103 1.01910 0.86746 0.79097 0.85387 0.77679 1.21123 1.21409 1.19918 1.19118 0.80193 0.94977 1.43343 0.88828 1.42560 1.04013 1.01252 1.89046 1.21200 0.90161 0.89905 0.92896 0.90692 1.23876 0.99263 1.02093 0.95567 1.21835 0.99234 0.80881 0.96561 0.88956 1.45935 1.42095 1.09260 1.38467 1.20542 0.79393 0.90167 0.79072 1.90650 1.40347 1.61092 1.50312 1.21387 0.98296 0.92983 1.00293 1.21390 0.98362 0.95181 0.98240 1.22135 0.89982 0.95989 0.99175 1.62190 1.05376 1.21378 1.36536 1.21850 1.02504 0.85164 0.94718 1.23128 1.03071 0.92625 1.02361 1.23029 0.93037 1.04074 1.01278 1.22892 1.01338 0.95567 1.01552 1.22028 0.96407 0.95705 0.92613 1.21878 0.94907 0.96260 1.03060 1.24282 0.97306 0.99371 1.01647 0.92923 0.81169 0.91302 0.88741 0.76347 0.89266 0.90961 0.90129 0.94792 0.90483 0.90372 0.90416 0.87937 0.89005 0.88599 0.88726 0.89077 0.90314 0.94320 0.89609 0.90237 0.90088 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.14 13.97 55.49 0.78 -27.36 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 3 Si 0.88 20.25 27.74 -169.99 -4.71 15.54 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -5.40 3.77 56.52 0.21 -5.19 16 7 C -0.25 -6.61 10.45 -15.06 -0.16 -6.77 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 N -0.73 -15.97 4.98 -52.50 -0.26 -16.23 16 10 C 0.17 3.09 4.57 -66.98 -0.31 2.79 16 11 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 12 C -0.17 -2.48 7.58 -25.92 -0.20 -2.68 16 13 C 0.12 1.90 4.30 -67.11 -0.29 1.61 16 14 H 0.09 1.45 7.50 -51.93 -0.39 1.06 16 15 N -0.70 -11.42 5.03 -53.01 -0.27 -11.68 16 16 C 0.52 8.47 7.16 -10.99 -0.08 8.40 16 17 O -0.55 -10.27 15.60 5.56 0.09 -10.19 16 18 C -0.11 -1.46 2.59 -91.65 -0.24 -1.69 16 19 C -0.09 -1.15 4.68 -26.65 -0.12 -1.27 16 20 C 0.06 0.57 5.17 -3.83 -0.02 0.55 16 21 N -0.53 -6.00 4.86 -234.67 -1.14 -7.14 16 22 C 0.09 0.81 5.65 -3.83 -0.02 0.78 16 23 C -0.19 -1.71 4.23 -90.63 -0.38 -2.10 16 24 C -0.18 -1.56 10.18 -26.73 -0.27 -1.83 16 25 C -0.18 -1.36 10.25 -26.73 -0.27 -1.64 16 26 C 0.06 0.75 5.00 -3.84 -0.02 0.73 16 27 C -0.12 -1.76 5.26 -26.65 -0.14 -1.90 16 28 C -0.18 -3.11 7.70 -25.77 -0.20 -3.31 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.35 7.40 3.21 -40.82 -0.13 7.26 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.40 6.57 5.43 -40.82 -0.22 6.35 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 37 H 0.03 0.34 6.61 -51.93 -0.34 -0.01 16 38 H 0.08 0.72 8.04 -51.93 -0.42 0.30 16 39 H 0.08 0.66 8.03 -51.93 -0.42 0.25 16 40 H 0.08 0.73 7.88 -51.93 -0.41 0.32 16 41 H 0.10 0.99 6.32 -51.93 -0.33 0.66 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.10 0.84 8.03 -51.92 -0.42 0.42 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 1.00 8.12 -51.92 -0.42 0.58 16 47 H 0.04 0.47 7.06 -51.93 -0.37 0.10 16 48 H 0.09 1.37 5.15 -51.93 -0.27 1.10 16 49 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 50 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 51 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 385.72 15.07 5.81 5.81 Total: -1.00 -30.46 385.72 -11.46 -41.92 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: -8.94 Total: 17.57 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -2.81 Total: -8.24 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: -0.89 Total: -62.41 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.71 Total: 15.54 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.46 -11.46 -41.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022955753.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.903 kcal (2) G-P(sol) polarization free energy of solvation -30.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds