Wall clock time and date at job start Fri Apr 10 2020 18:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47602 * 2 1 4 4 N 1.46505 * 109.47391 * 239.99814 * 2 1 3 5 5 C 1.34809 * 126.59160 * 84.99852 * 4 2 1 6 6 C 1.36597 * 106.83981 * 179.97438 * 5 4 2 7 7 C 1.47526 * 125.77122 * 180.02562 * 6 5 4 8 8 O 1.21599 * 119.99828 * 353.13642 * 7 6 5 9 9 N 1.34775 * 119.99761 * 173.13534 * 7 6 5 10 10 C 1.46926 * 120.63256 * 3.21595 * 9 7 6 11 11 C 1.52760 * 109.00585 * 233.58525 * 10 9 7 12 12 C 1.53042 * 109.38289 * 305.58355 * 11 10 9 13 13 C 1.53042 * 109.53511 * 61.24493 * 12 11 10 14 14 H 1.09000 * 109.52331 * 58.60202 * 13 12 11 15 15 N 1.46505 * 109.49528 * 178.68008 * 13 12 11 16 16 C 1.46501 * 119.99579 * 59.84270 * 15 13 12 17 17 C 1.36931 * 119.99976 * 239.83217 * 15 13 12 18 18 H 1.07999 * 119.99841 * 24.62869 * 17 15 13 19 19 C 1.38809 * 120.00067 * 204.62106 * 17 15 13 20 20 N 1.31620 * 120.00277 * 7.03612 * 19 17 15 21 21 Si 1.86804 * 119.99910 * 187.03345 * 19 17 15 22 22 H 1.48501 * 109.47263 * 60.00784 * 21 19 17 23 23 H 1.48505 * 109.47055 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47237 * 300.00207 * 21 19 17 25 25 C 1.46922 * 120.62758 * 183.49239 * 9 7 6 26 26 N 1.34401 * 108.45688 * 0.02562 * 6 5 4 27 27 N 1.28761 * 109.52189 * 359.74816 * 26 6 5 28 28 H 1.09002 * 109.46901 * 60.00053 * 1 2 3 29 29 H 1.09000 * 109.47124 * 299.99832 * 1 2 3 30 30 H 1.09002 * 109.47226 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47155 * 120.00435 * 2 1 3 32 32 H 1.09009 * 109.46846 * 59.99770 * 3 2 1 33 33 H 1.08991 * 109.47470 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47221 * 300.00395 * 3 2 1 35 35 H 1.08004 * 126.58393 * 359.97438 * 5 4 2 36 36 H 1.08995 * 109.58510 * 353.41660 * 10 9 7 37 37 H 1.08996 * 109.58666 * 113.84383 * 10 9 7 38 38 H 1.08997 * 109.56140 * 185.55353 * 11 10 9 39 39 H 1.08998 * 109.39101 * 65.51355 * 11 10 9 40 40 H 1.08994 * 109.46226 * 301.22408 * 12 11 10 41 41 H 1.09002 * 109.45802 * 181.26153 * 12 11 10 42 42 H 1.09001 * 109.47328 * 95.08310 * 16 15 13 43 43 H 1.09002 * 109.46524 * 215.08107 * 16 15 13 44 44 H 1.08997 * 109.47524 * 335.07525 * 16 15 13 45 45 H 0.96994 * 120.00223 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.58963 * 246.15367 * 25 9 7 47 47 H 1.08998 * 109.59086 * 6.58450 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1973 -0.1514 -2.4187 6 6 2.6644 -1.1489 -3.2266 7 6 3.0019 -1.0137 -4.6564 8 8 2.7545 0.0216 -5.2442 9 7 3.5844 -2.0377 -5.3110 10 6 3.8256 -3.3189 -4.6334 11 6 5.3000 -3.6902 -4.7814 12 6 5.6796 -3.6816 -6.2640 13 6 5.4734 -2.2775 -6.8369 14 1 6.0829 -1.5644 -6.2818 15 7 5.8669 -2.2626 -8.2481 16 6 5.1912 -3.1412 -9.2061 17 6 6.8659 -1.4273 -8.6716 18 1 7.6173 -1.0874 -7.9743 19 6 6.9128 -1.0176 -9.9970 20 7 5.9250 -1.3168 -10.8137 21 14 8.3781 -0.0416 -10.6215 22 1 9.6163 -0.8432 -10.4499 23 1 8.1867 0.2724 -12.0603 24 1 8.4957 1.2223 -9.8510 25 6 3.9959 -1.8920 -6.7139 26 7 2.7645 -2.2743 -2.4988 27 7 2.3943 -2.0382 -1.2883 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 2.0078 0.8727 -2.7045 36 1 3.5782 -3.2253 -3.5761 37 1 3.2090 -4.0944 -5.0879 38 1 5.4692 -4.6845 -4.3684 39 1 5.9115 -2.9645 -4.2451 40 1 5.0513 -4.3899 -6.8039 41 1 6.7257 -3.9681 -6.3727 42 1 4.3855 -2.5940 -9.6954 43 1 5.9069 -3.4808 -9.9549 44 1 4.7788 -4.0026 -8.6809 45 1 5.9576 -1.0302 -11.7398 46 1 3.3935 -2.5488 -7.3415 47 1 3.8608 -0.8573 -7.0288 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027634249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:12 Heat of formation + Delta-G solvation = 99.788782 kcal Electronic energy + Delta-G solvation = -27833.818333 eV Core-core repulsion = 24055.355230 eV Total energy + Delta-G solvation = -3778.463103 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.44511 -39.55791 -37.28397 -36.85827 -34.97026 -32.37104 -31.74582 -31.23913 -30.85201 -28.59163 -27.99015 -25.93597 -25.48626 -24.47798 -23.36449 -22.74377 -21.46286 -21.08301 -19.98023 -18.66457 -17.53152 -16.68003 -16.41487 -16.25773 -15.64856 -15.20490 -15.12008 -14.69059 -14.53602 -14.05201 -13.82264 -13.72090 -13.53141 -13.28593 -13.15733 -12.93326 -12.58935 -12.51698 -12.34907 -12.24943 -12.11979 -11.79175 -11.74134 -11.53928 -10.89003 -10.81382 -10.70833 -10.60192 -10.30351 -10.26564 -10.15738 -10.02688 -9.84087 -9.65655 -9.45264 -9.38532 -8.50573 -8.17620 -6.65787 -5.65130 -3.13679 0.99598 1.67604 1.75429 3.24366 3.44508 3.47425 3.48586 3.49837 3.84828 4.07671 4.16937 4.36275 4.52959 4.55688 4.76040 4.84636 4.90755 4.99505 5.04339 5.18453 5.25757 5.38398 5.45419 5.47743 5.48823 5.52539 5.60958 5.76703 5.87897 6.04568 6.15792 6.17265 6.29344 6.38426 6.45025 6.55861 6.64334 6.83179 6.92478 7.04869 7.11908 7.48664 7.70380 7.82304 7.88279 7.88992 8.42628 8.49466 9.31438 9.93091 10.42904 11.38981 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.021469 B = 0.002892 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.870047 B = 9681.157995 C =10299.620053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.144 3.856 3 C -0.170 4.170 4 N -0.355 5.355 5 C 0.091 3.909 6 C -0.086 4.086 7 C 0.594 3.406 8 O -0.543 6.543 9 N -0.586 5.586 10 C 0.070 3.930 11 C -0.127 4.127 12 C -0.134 4.134 13 C 0.170 3.830 14 H 0.063 0.937 15 N -0.592 5.592 16 C 0.162 3.838 17 C -0.254 4.254 18 H 0.067 0.933 19 C 0.004 3.996 20 N -0.908 5.908 21 Si 0.906 3.094 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.098 3.902 26 N -0.205 5.205 27 N -0.072 5.072 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.202 0.798 36 H 0.137 0.863 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.030 0.970 43 H 0.043 0.957 44 H -0.002 1.002 45 H 0.253 0.747 46 H 0.063 0.937 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.633 0.952 23.771 26.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 C -0.228 4.228 4 N -0.141 5.141 5 C -0.065 4.065 6 C -0.226 4.226 7 C 0.379 3.621 8 O -0.420 6.420 9 N -0.317 5.317 10 C -0.054 4.054 11 C -0.166 4.166 12 C -0.174 4.174 13 C 0.060 3.940 14 H 0.082 0.918 15 N -0.314 5.314 16 C 0.018 3.982 17 C -0.384 4.384 18 H 0.085 0.915 19 C -0.195 4.195 20 N -0.553 5.553 21 Si 0.736 3.264 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.209 1.209 25 C -0.025 4.025 26 N -0.078 5.078 27 N -0.050 5.050 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.132 0.868 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.219 0.781 36 H 0.153 0.847 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.048 0.952 43 H 0.062 0.938 44 H 0.017 0.983 45 H 0.063 0.937 46 H 0.081 0.919 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.646 0.231 24.020 26.275 hybrid contribution 0.610 1.422 -0.945 1.813 sum -10.036 1.653 23.075 25.218 Atomic orbital electron populations 1.22261 0.92502 1.03859 1.03864 1.21636 0.95658 0.93445 0.85003 1.22278 1.02800 0.93310 1.04433 1.50696 1.44542 1.09745 1.09136 1.23246 0.97619 1.01197 0.84472 1.21623 1.13273 0.90323 0.97335 1.16855 0.78241 0.83734 0.83241 1.90808 1.55236 1.28597 1.67368 1.48084 1.57622 1.12653 1.13385 1.22700 0.96457 0.84394 1.01838 1.21784 0.95953 1.01108 0.97769 1.22106 1.01440 0.99829 0.93993 1.20631 0.91958 0.94247 0.87116 0.91824 1.43910 1.40878 1.44605 1.02034 1.20812 0.96698 0.89784 0.90915 1.19175 1.02271 1.22622 0.94290 0.91543 1.25107 0.97627 0.99169 0.97561 1.70040 1.30752 1.49410 1.05113 0.86311 0.82194 0.80177 0.77682 1.21108 1.21642 1.20932 1.22600 0.97747 1.03638 0.78543 1.74150 1.12107 1.22855 0.98640 1.81977 1.17943 0.91966 1.13127 0.91369 0.89709 0.91215 0.86830 0.89311 0.91004 0.90933 0.78135 0.84695 0.92094 0.91395 0.92193 0.92316 0.91947 0.95188 0.93809 0.98342 0.93704 0.91882 0.89044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 9.52 37.16 0.35 -0.32 16 2 C 0.14 0.74 3.96 -67.93 -0.27 0.47 16 3 C -0.17 -0.60 8.85 37.16 0.33 -0.27 16 4 N -0.35 -3.32 3.54 -54.56 -0.19 -3.51 16 5 C 0.09 0.98 10.41 -16.84 -0.18 0.81 16 6 C -0.09 -1.24 6.77 -83.55 -0.57 -1.80 16 7 C 0.59 10.53 7.69 -12.47 -0.10 10.43 16 8 O -0.54 -11.11 16.30 5.28 0.09 -11.03 16 9 N -0.59 -10.41 2.98 -174.27 -0.52 -10.93 16 10 C 0.07 1.05 6.27 -3.93 -0.02 1.03 16 11 C -0.13 -1.90 6.06 -26.83 -0.16 -2.06 16 12 C -0.13 -2.41 5.13 -26.69 -0.14 -2.55 16 13 C 0.17 3.65 2.74 -67.80 -0.19 3.46 16 14 H 0.06 1.44 7.88 -51.93 -0.41 1.03 16 15 N -0.59 -15.19 2.82 -173.34 -0.49 -15.68 16 16 C 0.16 4.07 7.89 59.85 0.47 4.54 16 17 C -0.25 -7.15 9.59 -15.06 -0.14 -7.29 16 18 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 19 C 0.00 0.10 5.21 -17.43 -0.09 0.01 16 20 N -0.91 -26.94 10.50 55.49 0.58 -26.36 16 21 Si 0.91 22.37 29.56 -169.99 -5.02 17.35 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 25 C 0.10 2.03 5.79 -3.71 -0.02 2.00 16 26 N -0.21 -2.86 8.64 32.85 0.28 -2.58 16 27 N -0.07 -0.88 13.78 60.35 0.83 -0.05 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.14 8.14 -51.92 -0.42 -0.29 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.25 7.23 -51.93 -0.38 -0.12 16 35 H 0.20 1.66 7.34 -52.48 -0.39 1.28 16 36 H 0.14 1.96 3.64 -128.54 -0.47 1.49 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.05 6.71 -51.93 -0.35 0.70 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.03 0.81 7.34 -51.93 -0.38 0.43 16 43 H 0.04 1.18 7.28 -51.93 -0.38 0.80 16 44 H 0.00 -0.04 6.45 -51.93 -0.34 -0.38 16 45 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.06 1.31 7.51 -51.93 -0.39 0.92 16 47 H 0.09 2.15 7.02 -51.93 -0.36 1.79 16 LS Contribution 371.26 15.07 5.59 5.59 Total: -1.00 -33.71 371.26 -7.17 -40.89 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -7.61 Total: -2.16 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -0.72 Total: 8.47 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: 0.50 Total: -59.11 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.71 -7.17 -40.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027634249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.674 kcal (2) G-P(sol) polarization free energy of solvation -33.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds