Wall clock time and date at job start Fri Apr 10 2020 18:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47602 * 2 1 4 4 N 1.46505 * 109.47391 * 239.99814 * 2 1 3 5 5 C 1.34809 * 126.59160 * 84.99852 * 4 2 1 6 6 C 1.36597 * 106.83981 * 179.97438 * 5 4 2 7 7 C 1.47526 * 125.77122 * 180.02562 * 6 5 4 8 8 O 1.21599 * 119.99828 * 353.13642 * 7 6 5 9 9 N 1.34775 * 119.99761 * 173.13534 * 7 6 5 10 10 C 1.46926 * 120.63256 * 3.21595 * 9 7 6 11 11 C 1.52760 * 109.00585 * 233.58525 * 10 9 7 12 12 C 1.53042 * 109.38289 * 305.58355 * 11 10 9 13 13 C 1.53042 * 109.53511 * 61.24493 * 12 11 10 14 14 H 1.09000 * 109.52331 * 58.60202 * 13 12 11 15 15 N 1.46505 * 109.49528 * 178.68008 * 13 12 11 16 16 C 1.46501 * 119.99579 * 59.84270 * 15 13 12 17 17 C 1.36931 * 119.99976 * 239.83217 * 15 13 12 18 18 H 1.07999 * 119.99841 * 24.62869 * 17 15 13 19 19 C 1.38809 * 120.00067 * 204.62106 * 17 15 13 20 20 N 1.31620 * 120.00277 * 7.03612 * 19 17 15 21 21 Si 1.86804 * 119.99910 * 187.03345 * 19 17 15 22 22 H 1.48501 * 109.47263 * 60.00784 * 21 19 17 23 23 H 1.48505 * 109.47055 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47237 * 300.00207 * 21 19 17 25 25 C 1.46922 * 120.62758 * 183.49239 * 9 7 6 26 26 N 1.34401 * 108.45688 * 0.02562 * 6 5 4 27 27 N 1.28761 * 109.52189 * 359.74816 * 26 6 5 28 28 H 1.09002 * 109.46901 * 60.00053 * 1 2 3 29 29 H 1.09000 * 109.47124 * 299.99832 * 1 2 3 30 30 H 1.09002 * 109.47226 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47155 * 120.00435 * 2 1 3 32 32 H 1.09009 * 109.46846 * 59.99770 * 3 2 1 33 33 H 1.08991 * 109.47470 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47221 * 300.00395 * 3 2 1 35 35 H 1.08004 * 126.58393 * 359.97438 * 5 4 2 36 36 H 1.08995 * 109.58510 * 353.41660 * 10 9 7 37 37 H 1.08996 * 109.58666 * 113.84383 * 10 9 7 38 38 H 1.08997 * 109.56140 * 185.55353 * 11 10 9 39 39 H 1.08998 * 109.39101 * 65.51355 * 11 10 9 40 40 H 1.08994 * 109.46226 * 301.22408 * 12 11 10 41 41 H 1.09002 * 109.45802 * 181.26153 * 12 11 10 42 42 H 1.09001 * 109.47328 * 95.08310 * 16 15 13 43 43 H 1.09002 * 109.46524 * 215.08107 * 16 15 13 44 44 H 1.08997 * 109.47524 * 335.07525 * 16 15 13 45 45 H 0.96994 * 120.00223 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.58963 * 246.15367 * 25 9 7 47 47 H 1.08998 * 109.59086 * 6.58450 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1973 -0.1514 -2.4187 6 6 2.6644 -1.1489 -3.2266 7 6 3.0019 -1.0137 -4.6564 8 8 2.7545 0.0216 -5.2442 9 7 3.5844 -2.0377 -5.3110 10 6 3.8256 -3.3189 -4.6334 11 6 5.3000 -3.6902 -4.7814 12 6 5.6796 -3.6816 -6.2640 13 6 5.4734 -2.2775 -6.8369 14 1 6.0829 -1.5644 -6.2818 15 7 5.8669 -2.2626 -8.2481 16 6 5.1912 -3.1412 -9.2061 17 6 6.8659 -1.4273 -8.6716 18 1 7.6173 -1.0874 -7.9743 19 6 6.9128 -1.0176 -9.9970 20 7 5.9250 -1.3168 -10.8137 21 14 8.3781 -0.0416 -10.6215 22 1 9.6163 -0.8432 -10.4499 23 1 8.1867 0.2724 -12.0603 24 1 8.4957 1.2223 -9.8510 25 6 3.9959 -1.8920 -6.7139 26 7 2.7645 -2.2743 -2.4988 27 7 2.3943 -2.0382 -1.2883 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 2.0078 0.8727 -2.7045 36 1 3.5782 -3.2253 -3.5761 37 1 3.2090 -4.0944 -5.0879 38 1 5.4692 -4.6845 -4.3684 39 1 5.9115 -2.9645 -4.2451 40 1 5.0513 -4.3899 -6.8039 41 1 6.7257 -3.9681 -6.3727 42 1 4.3855 -2.5940 -9.6954 43 1 5.9069 -3.4808 -9.9549 44 1 4.7788 -4.0026 -8.6809 45 1 5.9576 -1.0302 -11.7398 46 1 3.3935 -2.5488 -7.3415 47 1 3.8608 -0.8573 -7.0288 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027634249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:11 Heat of formation + Delta-G solvation = 77.934255 kcal Electronic energy + Delta-G solvation = -27834.766016 eV Core-core repulsion = 24055.355230 eV Total energy + Delta-G solvation = -3779.410787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.38761 -40.98016 -38.87019 -37.48716 -36.73786 -34.02365 -32.83514 -32.55066 -32.06148 -30.26629 -28.29442 -28.04272 -26.82333 -25.60923 -24.81595 -23.96382 -22.98377 -21.81147 -21.30410 -20.15002 -18.88263 -18.44976 -17.56452 -17.23294 -16.94776 -16.82970 -16.03519 -15.96266 -15.71339 -15.42704 -15.25480 -15.06678 -14.89646 -14.38784 -14.25934 -14.03755 -13.88108 -13.59276 -13.52518 -13.31820 -13.17294 -12.95348 -12.75672 -12.60674 -12.53602 -12.43318 -12.20126 -12.12612 -12.10915 -11.96484 -11.71944 -11.41858 -11.38019 -11.33182 -10.77857 -10.63247 -10.40737 -9.67701 -8.73685 -7.81924 -5.33458 0.11703 0.54846 1.03288 1.45432 1.48250 1.54683 1.90109 2.18470 2.50966 3.04568 3.29837 3.31629 3.61112 3.65864 3.80821 3.90705 3.97987 4.01458 4.08602 4.16186 4.20250 4.33358 4.37426 4.43190 4.61854 4.65449 4.68713 4.75834 4.78115 4.81287 4.88791 4.96301 5.07021 5.14043 5.16910 5.20243 5.26373 5.29485 5.42454 5.47904 5.54518 5.61326 5.68003 5.74678 6.33598 6.37210 6.82537 7.08279 7.16115 7.86124 8.30429 9.20228 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.021469 B = 0.002892 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.870047 B = 9681.157995 C =10299.620053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 C -0.168 4.168 4 N -0.338 5.338 5 C 0.110 3.890 6 C -0.114 4.114 7 C 0.592 3.408 8 O -0.580 6.580 9 N -0.590 5.590 10 C 0.069 3.931 11 C -0.117 4.117 12 C -0.123 4.123 13 C 0.169 3.831 14 H 0.046 0.954 15 N -0.608 5.608 16 C 0.180 3.820 17 C -0.267 4.267 18 H 0.067 0.933 19 C -0.051 4.051 20 N -0.938 5.938 21 Si 0.972 3.028 22 H -0.275 1.275 23 H -0.292 1.292 24 H -0.278 1.278 25 C 0.114 3.886 26 N -0.217 5.217 27 N -0.081 5.081 28 H 0.064 0.936 29 H 0.113 0.887 30 H 0.056 0.944 31 H 0.127 0.873 32 H 0.115 0.885 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.226 0.774 36 H 0.149 0.851 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.002 0.998 43 H 0.018 0.982 44 H 0.031 0.969 45 H 0.249 0.751 46 H 0.060 0.940 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.909 0.954 26.829 28.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.035 3.965 3 C -0.226 4.226 4 N -0.124 5.124 5 C -0.048 4.048 6 C -0.253 4.253 7 C 0.379 3.621 8 O -0.460 6.460 9 N -0.320 5.320 10 C -0.053 4.053 11 C -0.156 4.156 12 C -0.162 4.162 13 C 0.061 3.939 14 H 0.064 0.936 15 N -0.331 5.331 16 C 0.035 3.965 17 C -0.397 4.397 18 H 0.084 0.916 19 C -0.246 4.246 20 N -0.584 5.584 21 Si 0.799 3.201 22 H -0.201 1.201 23 H -0.218 1.218 24 H -0.204 1.204 25 C -0.010 4.010 26 N -0.090 5.090 27 N -0.059 5.059 28 H 0.083 0.917 29 H 0.131 0.869 30 H 0.075 0.925 31 H 0.145 0.855 32 H 0.133 0.867 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.242 0.758 36 H 0.165 0.835 37 H 0.090 0.910 38 H 0.120 0.880 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.020 0.980 43 H 0.037 0.963 44 H 0.050 0.950 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.929 0.203 27.164 29.281 hybrid contribution 0.607 1.470 -1.711 2.336 sum -10.322 1.674 25.453 27.518 Atomic orbital electron populations 1.22270 0.91332 1.03380 1.05105 1.22149 0.96505 0.94225 0.83599 1.22316 1.02252 0.92113 1.05876 1.51053 1.42787 1.08761 1.09805 1.23539 0.95517 1.01467 0.84309 1.21216 1.16200 0.91951 0.95915 1.17276 0.77315 0.82915 0.84570 1.90777 1.56724 1.29924 1.68592 1.48099 1.57727 1.13989 1.12228 1.22921 0.96783 0.83180 1.02419 1.21749 0.95548 1.03013 0.95298 1.21946 1.01333 0.96841 0.96062 1.20741 0.91889 0.96286 0.84935 0.93563 1.44115 1.40794 1.44554 1.03645 1.20517 0.95019 0.90318 0.90599 1.19495 1.03008 1.22608 0.94593 0.91560 1.25891 1.00376 1.00527 0.97835 1.70221 1.32508 1.50641 1.05021 0.85281 0.79233 0.78822 0.76720 1.20098 1.21822 1.20440 1.22084 0.97214 1.01118 0.80618 1.74006 1.12801 1.23048 0.99111 1.81887 1.18137 0.93621 1.12287 0.91722 0.86898 0.92522 0.85529 0.86672 0.91866 0.90744 0.75782 0.83451 0.91017 0.87968 0.92522 0.91897 0.92382 0.98012 0.96296 0.95019 0.94208 0.92207 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 9.52 71.98 0.69 -0.16 16 2 C 0.13 0.98 3.96 44.99 0.18 1.16 16 3 C -0.17 -0.64 8.85 71.98 0.64 0.00 16 4 N -0.34 -5.58 3.54 -326.53 -1.16 -6.73 16 5 C 0.11 2.19 10.41 83.85 0.87 3.06 16 6 C -0.11 -3.16 6.77 40.82 0.28 -2.89 16 7 C 0.59 21.24 7.69 86.69 0.67 21.91 16 8 O -0.58 -24.53 16.30 -4.03 -0.07 -24.60 16 9 N -0.59 -21.08 2.98 -823.51 -2.45 -23.54 16 10 C 0.07 1.99 6.27 86.22 0.54 2.53 16 11 C -0.12 -3.25 6.06 30.53 0.19 -3.07 16 12 C -0.12 -4.27 5.13 30.62 0.16 -4.11 16 13 C 0.17 7.42 2.74 45.07 0.12 7.54 16 14 H 0.05 2.16 7.88 -2.39 -0.02 2.14 16 15 N -0.61 -32.00 2.82 -702.33 -1.98 -33.98 16 16 C 0.18 9.27 7.89 127.77 1.01 10.28 16 17 C -0.27 -15.37 9.59 84.03 0.81 -14.57 16 18 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 19 C -0.05 -2.98 5.21 84.86 0.44 -2.54 16 20 N -0.94 -57.36 10.50 21.65 0.23 -57.13 16 21 Si 0.97 46.77 29.56 68.60 2.03 48.80 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 23 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 24 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 25 C 0.11 4.88 5.79 86.37 0.50 5.38 16 26 N -0.22 -5.76 8.64 -49.99 -0.43 -6.20 16 27 N -0.08 -1.84 13.78 37.02 0.51 -1.33 16 28 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.11 -0.12 8.14 -2.38 -0.02 -0.14 16 33 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.07 0.29 7.23 -2.39 -0.02 0.27 16 35 H 0.23 3.27 7.34 -2.91 -0.02 3.25 16 36 H 0.15 4.03 3.64 -101.51 -0.37 3.66 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.06 2.14 6.71 -2.39 -0.02 2.13 16 41 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.00 0.09 7.34 -2.39 -0.02 0.07 16 43 H 0.02 1.03 7.28 -2.39 -0.02 1.01 16 44 H 0.03 1.38 6.45 -2.39 -0.02 1.37 16 45 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 46 H 0.06 2.55 7.51 -2.39 -0.02 2.54 16 47 H 0.05 2.68 7.02 -2.39 -0.02 2.67 16 Total: -1.00 -75.99 371.26 4.36 -71.63 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 0.61 Total: 8.56 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: 7.08 Total: 24.51 kcal Atomic # 7 Polarization: -123.62 SS G_CDS: -5.28 Total: -128.90 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.07 Total: -24.60 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -75.99 4.36 -71.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027634249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.564 kcal (2) G-P(sol) polarization free energy of solvation -75.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds