Wall clock time and date at job start Fri Apr 10 2020 18:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47613 * 2 1 4 4 N 1.46497 * 109.47017 * 239.99507 * 2 1 3 5 5 C 1.34814 * 126.59390 * 84.71927 * 4 2 1 6 6 C 1.36599 * 106.83906 * 179.90828 * 5 4 2 7 7 C 1.47524 * 125.76760 * 180.14192 * 6 5 4 8 8 O 1.21595 * 120.00110 * 6.06948 * 7 6 5 9 9 N 1.34777 * 119.99688 * 186.07778 * 7 6 5 10 10 C 1.46922 * 120.63195 * 7.00387 * 9 7 6 11 11 C 1.53629 * 108.54539 * 126.37034 * 10 9 7 12 12 C 1.53033 * 109.24054 * 54.85310 * 11 10 9 13 13 C 1.53040 * 109.54109 * 298.51161 * 12 11 10 14 14 H 1.08990 * 109.49930 * 301.41746 * 13 12 11 15 15 N 1.46502 * 109.49810 * 181.31676 * 13 12 11 16 16 C 1.46504 * 119.99768 * 300.16210 * 15 13 12 17 17 C 1.36935 * 120.00203 * 120.16389 * 15 13 12 18 18 H 1.08006 * 119.99695 * 17.84253 * 17 15 13 19 19 C 1.38803 * 120.00255 * 197.84590 * 17 15 13 20 20 N 1.31618 * 120.00170 * 23.71101 * 19 17 15 21 21 Si 1.86806 * 120.00045 * 203.70710 * 19 17 15 22 22 H 1.48506 * 109.46923 * 94.99506 * 21 19 17 23 23 H 1.48501 * 109.47033 * 214.99183 * 21 19 17 24 24 H 1.48497 * 109.47112 * 334.99265 * 21 19 17 25 25 C 1.46927 * 120.62888 * 187.28458 * 9 7 6 26 26 N 1.34397 * 108.46000 * 0.35700 * 6 5 4 27 27 N 1.28766 * 109.52456 * 359.77676 * 26 6 5 28 28 H 1.09003 * 109.47443 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46977 * 59.99863 * 1 2 3 30 30 H 1.09001 * 109.47453 * 300.00430 * 1 2 3 31 31 H 1.09005 * 109.46604 * 119.99749 * 2 1 3 32 32 H 1.09001 * 109.46574 * 300.00200 * 3 2 1 33 33 H 1.09001 * 109.47062 * 59.99330 * 3 2 1 34 34 H 1.08994 * 109.46986 * 179.97438 * 3 2 1 35 35 H 1.08001 * 126.57711 * 0.03086 * 5 4 2 36 36 H 1.08998 * 109.58826 * 246.20176 * 10 9 7 37 37 H 1.09002 * 109.59092 * 6.62567 * 10 9 7 38 38 H 1.09000 * 109.62847 * 294.86263 * 11 10 9 39 39 H 1.08999 * 109.42776 * 174.72794 * 11 10 9 40 40 H 1.09004 * 109.46110 * 178.48924 * 12 11 10 41 41 H 1.09007 * 109.44794 * 58.52744 * 12 11 10 42 42 H 1.09004 * 109.47021 * 91.65610 * 16 15 13 43 43 H 1.09004 * 109.46635 * 211.64825 * 16 15 13 44 44 H 1.08996 * 109.47511 * 331.65354 * 16 15 13 45 45 H 0.97003 * 120.00414 * 180.02562 * 20 19 17 46 46 H 1.08998 * 109.58845 * 353.36951 * 25 9 7 47 47 H 1.08996 * 109.58670 * 113.65566 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1922 -0.1529 -2.4200 6 6 2.6628 -1.1495 -3.2270 7 6 2.9992 -1.0147 -4.6570 8 8 2.9697 0.0788 -5.1880 9 7 3.3390 -2.1035 -5.3749 10 6 3.2319 -3.4479 -4.7919 11 6 2.3854 -4.3214 -5.7303 12 6 2.9953 -4.2920 -7.1335 13 6 2.9813 -2.8580 -7.6678 14 1 1.9566 -2.4872 -7.6877 15 7 3.5365 -2.8357 -9.0233 16 6 4.9087 -3.2910 -9.2604 17 6 2.7730 -2.3894 -10.0688 18 1 1.8916 -1.7949 -9.8785 19 6 3.1317 -2.7010 -11.3729 20 7 3.8767 -3.7585 -11.6158 21 14 2.5571 -1.6194 -12.7835 22 1 3.6121 -0.6254 -13.1066 23 1 2.2893 -2.4624 -13.9763 24 1 1.3132 -0.9107 -12.3889 25 6 3.8293 -1.9683 -6.7533 26 7 2.7630 -2.2748 -2.4991 27 7 2.3889 -2.0397 -1.2895 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 0.5139 0.8899 31 1 1.8932 -0.5138 0.8901 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4423 0.0005 35 1 1.9987 0.8702 -2.7068 36 1 4.2268 -3.8800 -4.6846 37 1 2.7511 -3.3857 -3.8156 38 1 1.3662 -3.9368 -5.7684 39 1 2.3743 -5.3464 -5.3597 40 1 2.4129 -4.9321 -7.7962 41 1 4.0228 -4.6534 -7.0903 42 1 4.9019 -4.3533 -9.5047 43 1 5.3393 -2.7302 -10.0900 44 1 5.5056 -3.1284 -8.3631 45 1 4.1277 -3.9761 -12.5272 46 1 3.7428 -0.9295 -7.0716 47 1 4.8727 -2.2797 -6.8021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027634250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:16 Heat of formation + Delta-G solvation = 98.201648 kcal Electronic energy + Delta-G solvation = -27759.592589 eV Core-core repulsion = 23981.060662 eV Total energy + Delta-G solvation = -3778.531926 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.46350 -39.61529 -37.30921 -36.87744 -34.99999 -32.37516 -31.76019 -31.27524 -30.88350 -28.63731 -28.01101 -25.96894 -25.50287 -24.47000 -23.42556 -22.79368 -21.46561 -21.10439 -20.01076 -18.72182 -17.54894 -16.66908 -16.46483 -16.25794 -15.74112 -15.32714 -14.99267 -14.76337 -14.52825 -14.05698 -13.82050 -13.75720 -13.53240 -13.31807 -13.15360 -12.95325 -12.64999 -12.52821 -12.39184 -12.26529 -12.15379 -11.93217 -11.75930 -11.45961 -10.98767 -10.77150 -10.76138 -10.63883 -10.43075 -10.21287 -10.15166 -10.05466 -9.81903 -9.75006 -9.52022 -9.41135 -8.51646 -8.19626 -6.75306 -5.70726 -3.06104 0.96590 1.63934 1.73469 3.19122 3.39676 3.45083 3.52336 3.54042 3.82236 4.05413 4.14921 4.34021 4.49711 4.57417 4.72884 4.82342 4.88387 4.97825 5.02062 5.16997 5.23880 5.36277 5.41631 5.44272 5.47688 5.52028 5.57566 5.72947 5.85272 5.95029 6.13425 6.14912 6.24332 6.34382 6.39096 6.52474 6.62202 6.75548 6.89170 7.03659 7.10177 7.38630 7.64510 7.69472 7.83295 7.88906 8.34988 8.43269 9.26934 9.92779 10.40308 11.36130 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.023971 B = 0.002781 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.804521 B =10066.953186 C =10666.211409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.144 3.856 3 C -0.170 4.170 4 N -0.355 5.355 5 C 0.092 3.908 6 C -0.090 4.090 7 C 0.597 3.403 8 O -0.543 6.543 9 N -0.587 5.587 10 C 0.084 3.916 11 C -0.130 4.130 12 C -0.133 4.133 13 C 0.170 3.830 14 H 0.065 0.935 15 N -0.592 5.592 16 C 0.159 3.841 17 C -0.255 4.255 18 H 0.071 0.929 19 C 0.002 3.998 20 N -0.900 5.900 21 Si 0.897 3.103 22 H -0.289 1.289 23 H -0.293 1.293 24 H -0.279 1.279 25 C 0.097 3.903 26 N -0.204 5.204 27 N -0.072 5.072 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.202 0.798 36 H 0.064 0.936 37 H 0.123 0.877 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.024 0.976 43 H 0.045 0.955 44 H 0.002 0.998 45 H 0.252 0.748 46 H 0.091 0.909 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.276 6.606 26.423 27.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 C -0.228 4.228 4 N -0.142 5.142 5 C -0.065 4.065 6 C -0.229 4.229 7 C 0.382 3.618 8 O -0.421 6.421 9 N -0.318 5.318 10 C -0.039 4.039 11 C -0.169 4.169 12 C -0.173 4.173 13 C 0.061 3.939 14 H 0.083 0.917 15 N -0.313 5.313 16 C 0.014 3.986 17 C -0.384 4.384 18 H 0.088 0.912 19 C -0.197 4.197 20 N -0.544 5.544 21 Si 0.727 3.273 22 H -0.216 1.216 23 H -0.220 1.220 24 H -0.204 1.204 25 C -0.027 4.027 26 N -0.077 5.077 27 N -0.050 5.050 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.132 0.868 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.218 0.782 36 H 0.082 0.918 37 H 0.140 0.860 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.043 0.957 43 H 0.064 0.936 44 H 0.021 0.979 45 H 0.062 0.938 46 H 0.109 0.891 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.084 5.812 26.745 27.672 hybrid contribution -0.342 1.290 -1.305 1.867 sum -4.425 7.102 25.439 26.780 Atomic orbital electron populations 1.22267 0.92471 1.03915 1.03876 1.21633 0.95689 0.93419 0.85007 1.22272 1.02732 0.93333 1.04435 1.50716 1.44618 1.09777 1.09068 1.23247 0.97652 1.01163 0.84432 1.21582 1.13646 0.90391 0.97251 1.16826 0.77436 0.84472 0.83068 1.90798 1.54397 1.26129 1.70744 1.47969 1.63146 1.06195 1.14537 1.22620 1.00944 0.81343 0.98997 1.21996 0.99405 0.99182 0.96326 1.22133 1.00694 0.99908 0.94527 1.20558 0.96092 0.92163 0.85067 0.91664 1.43957 1.10809 1.75110 1.01437 1.20765 0.83653 0.98637 0.95554 1.19242 1.08599 1.25571 0.84986 0.91157 1.24815 1.00535 0.96909 0.97404 1.70170 1.41494 1.23574 1.19209 0.86342 0.78311 0.80439 0.82197 1.21570 1.22021 1.20436 1.22461 0.98306 1.03115 0.78770 1.74416 1.12115 1.22669 0.98467 1.81990 1.18301 0.91873 1.12872 0.91168 0.91358 0.89709 0.86832 0.90948 0.89304 0.91060 0.78165 0.91792 0.85969 0.92133 0.91395 0.91615 0.92507 0.95735 0.93594 0.97943 0.93839 0.89095 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.66 9.52 37.16 0.35 -0.30 16 2 C 0.14 0.70 3.96 -67.93 -0.27 0.43 16 3 C -0.17 -0.53 8.85 37.16 0.33 -0.20 16 4 N -0.36 -3.22 3.54 -54.56 -0.19 -3.41 16 5 C 0.09 0.95 10.41 -16.83 -0.18 0.77 16 6 C -0.09 -1.24 6.71 -83.55 -0.56 -1.80 16 7 C 0.60 10.09 7.68 -12.47 -0.10 10.00 16 8 O -0.54 -10.54 16.30 5.28 0.09 -10.45 16 9 N -0.59 -10.00 2.97 -173.73 -0.52 -10.51 16 10 C 0.08 1.25 6.13 -3.49 -0.02 1.23 16 11 C -0.13 -1.97 6.10 -26.39 -0.16 -2.13 16 12 C -0.13 -2.49 5.14 -26.69 -0.14 -2.62 16 13 C 0.17 3.63 2.74 -67.81 -0.19 3.44 16 14 H 0.07 1.47 7.83 -51.93 -0.41 1.06 16 15 N -0.59 -15.04 2.82 -173.34 -0.49 -15.53 16 16 C 0.16 3.92 8.11 59.85 0.49 4.41 16 17 C -0.25 -7.17 9.58 -15.06 -0.14 -7.31 16 18 H 0.07 1.97 7.85 -52.48 -0.41 1.56 16 19 C 0.00 0.05 4.83 -17.43 -0.08 -0.03 16 20 N -0.90 -26.60 11.11 55.49 0.62 -25.99 16 21 Si 0.90 22.34 29.62 -169.99 -5.03 17.30 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.10 1.88 5.79 -3.71 -0.02 1.85 16 26 N -0.20 -2.79 8.76 32.85 0.29 -2.50 16 27 N -0.07 -0.87 13.79 60.35 0.83 -0.04 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.22 7.23 -51.93 -0.38 -0.15 16 33 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.20 1.55 7.35 -52.49 -0.39 1.16 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.12 1.74 4.07 -84.86 -0.35 1.40 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.06 1.06 7.71 -51.92 -0.40 0.66 16 42 H 0.02 0.65 7.66 -51.93 -0.40 0.25 16 43 H 0.05 1.23 7.05 -51.93 -0.37 0.86 16 44 H 0.00 0.05 6.35 -51.93 -0.33 -0.28 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.09 1.94 7.00 -51.93 -0.36 1.57 16 47 H 0.07 1.25 6.49 -51.93 -0.34 0.91 16 LS Contribution 372.08 15.07 5.61 5.61 Total: -1.00 -33.60 372.08 -6.97 -40.57 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -7.48 Total: -2.77 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -0.69 Total: 7.73 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.54 Total: -57.98 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.60 -6.97 -40.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027634250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.772 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds