Wall clock time and date at job start Fri Apr 10 2020 18:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47613 * 2 1 4 4 N 1.46497 * 109.47017 * 239.99507 * 2 1 3 5 5 C 1.34814 * 126.59390 * 84.71927 * 4 2 1 6 6 C 1.36599 * 106.83906 * 179.90828 * 5 4 2 7 7 C 1.47524 * 125.76760 * 180.14192 * 6 5 4 8 8 O 1.21595 * 120.00110 * 6.06948 * 7 6 5 9 9 N 1.34777 * 119.99688 * 186.07778 * 7 6 5 10 10 C 1.46922 * 120.63195 * 7.00387 * 9 7 6 11 11 C 1.53629 * 108.54539 * 126.37034 * 10 9 7 12 12 C 1.53033 * 109.24054 * 54.85310 * 11 10 9 13 13 C 1.53040 * 109.54109 * 298.51161 * 12 11 10 14 14 H 1.08990 * 109.49930 * 301.41746 * 13 12 11 15 15 N 1.46502 * 109.49810 * 181.31676 * 13 12 11 16 16 C 1.46504 * 119.99768 * 300.16210 * 15 13 12 17 17 C 1.36935 * 120.00203 * 120.16389 * 15 13 12 18 18 H 1.08006 * 119.99695 * 17.84253 * 17 15 13 19 19 C 1.38803 * 120.00255 * 197.84590 * 17 15 13 20 20 N 1.31618 * 120.00170 * 23.71101 * 19 17 15 21 21 Si 1.86806 * 120.00045 * 203.70710 * 19 17 15 22 22 H 1.48506 * 109.46923 * 94.99506 * 21 19 17 23 23 H 1.48501 * 109.47033 * 214.99183 * 21 19 17 24 24 H 1.48497 * 109.47112 * 334.99265 * 21 19 17 25 25 C 1.46927 * 120.62888 * 187.28458 * 9 7 6 26 26 N 1.34397 * 108.46000 * 0.35700 * 6 5 4 27 27 N 1.28766 * 109.52456 * 359.77676 * 26 6 5 28 28 H 1.09003 * 109.47443 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46977 * 59.99863 * 1 2 3 30 30 H 1.09001 * 109.47453 * 300.00430 * 1 2 3 31 31 H 1.09005 * 109.46604 * 119.99749 * 2 1 3 32 32 H 1.09001 * 109.46574 * 300.00200 * 3 2 1 33 33 H 1.09001 * 109.47062 * 59.99330 * 3 2 1 34 34 H 1.08994 * 109.46986 * 179.97438 * 3 2 1 35 35 H 1.08001 * 126.57711 * 0.03086 * 5 4 2 36 36 H 1.08998 * 109.58826 * 246.20176 * 10 9 7 37 37 H 1.09002 * 109.59092 * 6.62567 * 10 9 7 38 38 H 1.09000 * 109.62847 * 294.86263 * 11 10 9 39 39 H 1.08999 * 109.42776 * 174.72794 * 11 10 9 40 40 H 1.09004 * 109.46110 * 178.48924 * 12 11 10 41 41 H 1.09007 * 109.44794 * 58.52744 * 12 11 10 42 42 H 1.09004 * 109.47021 * 91.65610 * 16 15 13 43 43 H 1.09004 * 109.46635 * 211.64825 * 16 15 13 44 44 H 1.08996 * 109.47511 * 331.65354 * 16 15 13 45 45 H 0.97003 * 120.00414 * 180.02562 * 20 19 17 46 46 H 1.08998 * 109.58845 * 353.36951 * 25 9 7 47 47 H 1.08996 * 109.58670 * 113.65566 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1922 -0.1529 -2.4200 6 6 2.6628 -1.1495 -3.2270 7 6 2.9992 -1.0147 -4.6570 8 8 2.9697 0.0788 -5.1880 9 7 3.3390 -2.1035 -5.3749 10 6 3.2319 -3.4479 -4.7919 11 6 2.3854 -4.3214 -5.7303 12 6 2.9953 -4.2920 -7.1335 13 6 2.9813 -2.8580 -7.6678 14 1 1.9566 -2.4872 -7.6877 15 7 3.5365 -2.8357 -9.0233 16 6 4.9087 -3.2910 -9.2604 17 6 2.7730 -2.3894 -10.0688 18 1 1.8916 -1.7949 -9.8785 19 6 3.1317 -2.7010 -11.3729 20 7 3.8767 -3.7585 -11.6158 21 14 2.5571 -1.6194 -12.7835 22 1 3.6121 -0.6254 -13.1066 23 1 2.2893 -2.4624 -13.9763 24 1 1.3132 -0.9107 -12.3889 25 6 3.8293 -1.9683 -6.7533 26 7 2.7630 -2.2748 -2.4991 27 7 2.3889 -2.0397 -1.2895 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 0.5139 0.8899 31 1 1.8932 -0.5138 0.8901 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4423 0.0005 35 1 1.9987 0.8702 -2.7068 36 1 4.2268 -3.8800 -4.6846 37 1 2.7511 -3.3857 -3.8156 38 1 1.3662 -3.9368 -5.7684 39 1 2.3743 -5.3464 -5.3597 40 1 2.4129 -4.9321 -7.7962 41 1 4.0228 -4.6534 -7.0903 42 1 4.9019 -4.3533 -9.5047 43 1 5.3393 -2.7302 -10.0900 44 1 5.5056 -3.1284 -8.3631 45 1 4.1277 -3.9761 -12.5272 46 1 3.7428 -0.9295 -7.0716 47 1 4.8727 -2.2797 -6.8021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027634250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:15 Heat of formation + Delta-G solvation = 76.668661 kcal Electronic energy + Delta-G solvation = -27760.526329 eV Core-core repulsion = 23981.060662 eV Total energy + Delta-G solvation = -3779.465667 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.36315 -40.98350 -38.86310 -37.47038 -36.74216 -34.01690 -32.87886 -32.52813 -32.03661 -30.28098 -28.29000 -28.04573 -26.81354 -25.60671 -24.83025 -23.96282 -22.98968 -21.79809 -21.30424 -20.17558 -18.85333 -18.43644 -17.58841 -17.22533 -16.97619 -16.73704 -16.12641 -15.86305 -15.72546 -15.49405 -15.23273 -15.04071 -14.88914 -14.48438 -14.25010 -13.96950 -13.81182 -13.67267 -13.57139 -13.28030 -13.17591 -12.99709 -12.83818 -12.60196 -12.53291 -12.38255 -12.29996 -12.10482 -12.01061 -11.91106 -11.77912 -11.47685 -11.39788 -11.31301 -10.88272 -10.60531 -10.38996 -9.69133 -8.81722 -7.87328 -5.25094 0.12942 0.56006 1.05167 1.45230 1.48041 1.56654 1.90162 2.17844 2.52252 3.06949 3.24809 3.31046 3.60600 3.64365 3.81212 3.91741 3.97218 4.01865 4.07514 4.14008 4.21486 4.29300 4.36440 4.43534 4.62373 4.65764 4.68772 4.73896 4.78407 4.79630 4.89415 4.91293 5.02847 5.11916 5.14340 5.18988 5.22427 5.27332 5.42890 5.47067 5.49171 5.58971 5.63911 5.68235 6.29036 6.35955 6.82501 7.07789 7.12824 7.85626 8.28296 9.17655 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.023971 B = 0.002781 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.804521 B =10066.953186 C =10666.211409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 C -0.167 4.167 4 N -0.339 5.339 5 C 0.110 3.890 6 C -0.117 4.117 7 C 0.596 3.404 8 O -0.576 6.576 9 N -0.592 5.592 10 C 0.088 3.912 11 C -0.120 4.120 12 C -0.122 4.122 13 C 0.170 3.830 14 H 0.046 0.954 15 N -0.607 5.607 16 C 0.175 3.825 17 C -0.267 4.267 18 H 0.065 0.935 19 C -0.048 4.048 20 N -0.929 5.929 21 Si 0.960 3.040 22 H -0.287 1.287 23 H -0.293 1.293 24 H -0.271 1.271 25 C 0.113 3.887 26 N -0.218 5.218 27 N -0.084 5.084 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.063 0.937 35 H 0.227 0.773 36 H 0.075 0.925 37 H 0.136 0.864 38 H 0.056 0.944 39 H 0.097 0.903 40 H 0.043 0.957 41 H 0.059 0.941 42 H 0.003 0.997 43 H 0.019 0.981 44 H 0.034 0.966 45 H 0.250 0.750 46 H 0.067 0.933 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.016 7.602 29.181 30.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.035 3.965 3 C -0.225 4.225 4 N -0.125 5.125 5 C -0.048 4.048 6 C -0.256 4.256 7 C 0.383 3.617 8 O -0.455 6.455 9 N -0.322 5.322 10 C -0.035 4.035 11 C -0.159 4.159 12 C -0.162 4.162 13 C 0.062 3.938 14 H 0.064 0.936 15 N -0.329 5.329 16 C 0.030 3.970 17 C -0.396 4.396 18 H 0.082 0.918 19 C -0.244 4.244 20 N -0.575 5.575 21 Si 0.789 3.211 22 H -0.214 1.214 23 H -0.220 1.220 24 H -0.196 1.196 25 C -0.011 4.011 26 N -0.091 5.091 27 N -0.063 5.063 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.130 0.870 31 H 0.143 0.857 32 H 0.093 0.907 33 H 0.133 0.867 34 H 0.082 0.918 35 H 0.243 0.757 36 H 0.093 0.907 37 H 0.152 0.848 38 H 0.075 0.925 39 H 0.115 0.885 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.021 0.979 43 H 0.038 0.962 44 H 0.053 0.947 45 H 0.059 0.941 46 H 0.086 0.914 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.846 6.799 29.580 30.735 hybrid contribution -0.177 1.042 -1.988 2.252 sum -5.022 7.841 27.591 29.120 Atomic orbital electron populations 1.22274 0.91424 1.03343 1.05106 1.22133 0.96439 0.94282 0.83625 1.22308 1.02255 0.92016 1.05885 1.51069 1.42876 1.08800 1.09788 1.23568 0.95538 1.01470 0.84188 1.21248 1.16431 0.91906 0.96005 1.17195 0.76441 0.83762 0.84256 1.90770 1.55770 1.27204 1.71788 1.48002 1.63286 1.07428 1.13526 1.22760 1.01622 0.79963 0.99118 1.21942 0.98836 1.01109 0.93971 1.21953 1.00791 0.97202 0.96237 1.20660 0.95191 0.94173 0.83814 0.93598 1.44147 1.11009 1.75278 1.02504 1.20518 0.83824 0.96701 0.95959 1.19477 1.08676 1.25334 0.86161 0.91762 1.25536 1.01314 0.97971 0.99537 1.70289 1.42947 1.24831 1.19413 0.85349 0.78033 0.78602 0.79115 1.21436 1.21982 1.19611 1.22007 0.98039 1.01045 0.80024 1.74300 1.12785 1.23032 0.98980 1.81904 1.18611 0.93588 1.12178 0.92611 0.91670 0.86959 0.85662 0.90668 0.86738 0.91808 0.75662 0.90681 0.84757 0.92497 0.88459 0.93840 0.92266 0.97867 0.96220 0.94737 0.94134 0.91417 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 9.52 71.98 0.69 -0.12 16 2 C 0.13 0.91 3.96 44.99 0.18 1.09 16 3 C -0.17 -0.48 8.85 71.98 0.64 0.15 16 4 N -0.34 -5.36 3.54 -326.54 -1.16 -6.52 16 5 C 0.11 2.07 10.41 83.85 0.87 2.94 16 6 C -0.12 -3.09 6.71 40.82 0.27 -2.81 16 7 C 0.60 19.99 7.68 86.69 0.67 20.65 16 8 O -0.58 -22.48 16.30 -4.02 -0.07 -22.55 16 9 N -0.59 -19.93 2.97 -821.82 -2.44 -22.36 16 10 C 0.09 2.47 6.13 86.51 0.53 3.00 16 11 C -0.12 -3.47 6.10 30.82 0.19 -3.28 16 12 C -0.12 -4.56 5.14 30.62 0.16 -4.41 16 13 C 0.17 7.35 2.74 45.07 0.12 7.48 16 14 H 0.05 2.14 7.83 -2.39 -0.02 2.12 16 15 N -0.61 -31.64 2.82 -702.33 -1.98 -33.62 16 16 C 0.17 8.83 8.11 127.77 1.04 9.86 16 17 C -0.27 -15.36 9.58 84.03 0.81 -14.56 16 18 H 0.06 3.70 7.85 -2.91 -0.02 3.67 16 19 C -0.05 -2.77 4.83 84.86 0.41 -2.36 16 20 N -0.93 -56.17 11.11 21.65 0.24 -55.93 16 21 Si 0.96 46.72 29.62 68.60 2.03 48.75 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 23 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 24 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 25 C 0.11 4.42 5.79 86.36 0.50 4.92 16 26 N -0.22 -5.66 8.76 -49.99 -0.44 -6.10 16 27 N -0.08 -1.88 13.79 37.02 0.51 -1.37 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.13 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.07 0.21 7.23 -2.39 -0.02 0.19 16 33 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 34 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.23 2.93 7.35 -2.91 -0.02 2.90 16 36 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 37 H 0.14 3.61 4.07 -45.00 -0.18 3.43 16 38 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.10 2.30 8.14 -2.39 -0.02 2.29 16 40 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.06 2.17 7.71 -2.38 -0.02 2.16 16 42 H 0.00 0.17 7.66 -2.39 -0.02 0.15 16 43 H 0.02 1.06 7.05 -2.39 -0.02 1.04 16 44 H 0.03 1.48 6.35 -2.39 -0.02 1.47 16 45 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 46 H 0.07 2.96 7.00 -2.39 -0.02 2.95 16 47 H 0.07 2.65 6.49 -2.39 -0.02 2.63 16 Total: -1.00 -74.61 372.08 4.56 -70.06 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 0.79 Total: 7.09 kcal Atomic # 6 Polarization: 15.50 SS G_CDS: 7.06 Total: 22.56 kcal Atomic # 7 Polarization: -120.64 SS G_CDS: -5.26 Total: -125.90 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.07 Total: -22.55 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -74.61 4.56 -70.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027634250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.724 kcal (2) G-P(sol) polarization free energy of solvation -74.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds