Wall clock time and date at job start Fri Apr 10 2020 18:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53006 * 109.47481 * 2 1 4 4 C 1.53000 * 109.47536 * 239.99916 * 2 1 3 5 5 N 1.46503 * 109.47387 * 119.99976 * 2 1 3 6 6 C 1.34810 * 126.59570 * 74.99756 * 5 2 1 7 7 C 1.36600 * 106.84108 * 180.02562 * 6 5 2 8 8 C 1.47522 * 125.76882 * 179.73588 * 7 6 5 9 9 O 1.21595 * 120.00044 * 0.02562 * 8 7 6 10 10 N 1.34769 * 119.99850 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00195 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47210 * 174.97381 * 11 10 8 13 13 H 1.08991 * 109.87889 * 55.56834 * 12 11 10 14 14 C 1.54326 * 109.88074 * 294.54340 * 12 11 10 15 15 C 1.55150 * 102.94672 * 218.39227 * 14 12 11 16 16 C 1.54908 * 101.57962 * 35.50546 * 15 14 12 17 17 N 1.47029 * 109.87956 * 176.74341 * 12 11 10 18 18 C 1.36933 * 125.64741 * 298.33396 * 17 12 11 19 19 H 1.08000 * 120.00091 * 345.84796 * 18 17 12 20 20 C 1.38810 * 120.00052 * 165.85507 * 18 17 12 21 21 N 1.31626 * 120.00107 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00118 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47065 * 89.99582 * 22 20 18 24 24 H 1.48502 * 109.47196 * 209.99896 * 22 20 18 25 25 H 1.48500 * 109.47128 * 329.99771 * 22 20 18 26 26 N 1.34398 * 108.45821 * 359.97438 * 7 6 5 27 27 N 1.28761 * 109.52232 * 0.02562 * 26 7 6 28 28 H 1.09001 * 109.47300 * 300.00329 * 1 2 3 29 29 H 1.09006 * 109.47153 * 59.99884 * 1 2 3 30 30 H 1.09003 * 109.47081 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47327 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.47022 * 300.00196 * 3 2 1 33 33 H 1.09001 * 109.47122 * 59.99562 * 3 2 1 34 34 H 1.09003 * 109.47100 * 300.00189 * 4 2 1 35 35 H 1.09006 * 109.46736 * 59.99945 * 4 2 1 36 36 H 1.09001 * 109.47559 * 180.02562 * 4 2 1 37 37 H 1.08001 * 126.57859 * 0.02562 * 6 5 2 38 38 H 0.97005 * 120.00143 * 0.02562 * 10 8 7 39 39 H 1.09005 * 109.46770 * 294.97025 * 11 10 8 40 40 H 1.08996 * 109.47360 * 54.96876 * 11 10 8 41 41 H 1.08997 * 110.72406 * 336.76040 * 14 12 11 42 42 H 1.09003 * 110.71629 * 100.03078 * 14 12 11 43 43 H 1.08995 * 111.00965 * 153.57858 * 15 14 12 44 44 H 1.09003 * 111.00554 * 277.43348 * 15 14 12 45 45 H 1.08997 * 110.36982 * 81.83067 * 16 15 14 46 46 H 1.09004 * 110.36895 * 204.04288 * 16 15 14 47 47 H 0.96991 * 120.00099 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0221 -2.0215 1.4105 7 6 2.5628 -2.2214 2.6489 8 6 2.7592 -3.5289 3.3033 9 8 2.4278 -4.5502 2.7327 10 7 3.3069 -3.5914 4.5331 11 6 3.5025 -4.8898 5.1828 12 6 4.2491 -4.6919 6.5035 13 1 3.7105 -3.9820 7.1310 14 6 5.6754 -4.1714 6.2272 15 6 6.5294 -4.9197 7.2845 16 6 5.8151 -6.2929 7.3460 17 7 4.3819 -5.9797 7.2006 18 6 3.3459 -6.7587 7.6420 19 1 2.3480 -6.3494 7.6976 20 6 3.5782 -8.0745 8.0182 21 7 4.7943 -8.5735 7.9501 22 14 2.1651 -9.1371 8.6210 23 1 1.5452 -9.8374 7.4675 24 1 2.6773 -10.1382 9.5909 25 1 1.1493 -8.2803 9.2839 26 7 2.8808 -1.0251 3.1725 27 7 2.5715 -0.0944 2.3383 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 1.6659 -2.7836 0.7331 38 1 3.5716 -2.7766 4.9882 39 1 2.5329 -5.3477 5.3787 40 1 4.0855 -5.5388 4.5295 41 1 5.9933 -4.4346 5.2183 42 1 5.7291 -3.0936 6.3807 43 1 7.5600 -5.0302 6.9473 44 1 6.4878 -4.4141 8.2493 45 1 6.1489 -6.9311 6.5278 46 1 6.0041 -6.7763 8.3045 47 1 4.9566 -9.4930 8.2126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027922838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:24 Heat of formation + Delta-G solvation = 76.320692 kcal Electronic energy + Delta-G solvation = -27064.151597 eV Core-core repulsion = 23284.670841 eV Total energy + Delta-G solvation = -3779.480756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.39177 -39.19586 -37.76886 -37.44791 -34.21348 -32.45771 -32.18868 -31.06032 -29.55882 -28.58443 -28.09177 -27.97559 -25.06666 -24.26914 -23.80203 -22.60518 -20.89335 -20.25441 -19.81072 -19.36756 -17.78444 -16.79127 -16.29246 -16.23722 -15.81481 -15.01457 -14.95064 -14.74827 -14.61331 -14.33816 -14.21106 -13.79831 -13.36762 -13.16583 -13.06126 -12.89154 -12.82449 -12.45533 -12.35038 -12.03588 -11.96642 -11.82966 -11.68350 -11.64675 -11.30116 -11.25231 -10.89865 -10.76249 -10.51190 -10.17952 -10.07895 -9.97620 -9.79695 -9.72910 -9.63097 -9.37961 -8.60509 -8.51649 -6.79588 -5.72562 -3.08835 1.03192 1.73877 1.76019 3.40433 3.44759 3.48921 3.49317 3.50086 3.81610 4.05653 4.13145 4.17664 4.51630 4.65336 4.76564 4.84251 4.92392 5.02037 5.02740 5.07104 5.16925 5.21741 5.38956 5.39326 5.47670 5.52448 5.55738 5.63374 5.68834 5.80472 5.88554 6.13671 6.20183 6.24146 6.33640 6.52867 6.60481 6.68934 6.76714 6.87283 7.12598 7.56899 7.65609 7.72117 7.83728 7.97699 8.29799 8.48499 9.21791 9.82325 10.50036 11.39406 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.021831 B = 0.002532 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.248082 B =11055.870456 C =11825.864682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.170 3.830 3 C -0.148 4.148 4 C -0.163 4.163 5 N -0.353 5.353 6 C 0.090 3.910 7 C -0.095 4.095 8 C 0.596 3.404 9 O -0.543 6.543 10 N -0.705 5.705 11 C 0.109 3.891 12 C 0.152 3.848 13 H 0.039 0.961 14 C -0.126 4.126 15 C -0.149 4.149 16 C 0.172 3.828 17 N -0.589 5.589 18 C -0.232 4.232 19 H 0.076 0.924 20 C -0.002 4.002 21 N -0.916 5.916 22 Si 0.910 3.090 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.280 1.280 26 N -0.207 5.207 27 N -0.067 5.067 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.200 0.800 38 H 0.404 0.596 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.025 0.975 46 H 0.073 0.927 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.706 19.714 -18.125 27.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.087 3.913 3 C -0.206 4.206 4 C -0.222 4.222 5 N -0.140 5.140 6 C -0.067 4.067 7 C -0.234 4.234 8 C 0.379 3.621 9 O -0.420 6.420 10 N -0.355 5.355 11 C -0.016 4.016 12 C 0.043 3.957 13 H 0.057 0.943 14 C -0.164 4.164 15 C -0.187 4.187 16 C 0.047 3.953 17 N -0.313 5.313 18 C -0.360 4.360 19 H 0.094 0.906 20 C -0.200 4.200 21 N -0.562 5.562 22 Si 0.741 3.259 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.206 1.206 26 N -0.080 5.080 27 N -0.046 5.046 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.217 0.783 38 H 0.238 0.762 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.043 0.957 46 H 0.091 0.909 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.570 20.053 -17.749 27.167 hybrid contribution -0.977 -1.178 -0.190 1.543 sum -5.548 18.875 -17.940 26.625 Atomic orbital electron populations 1.22291 0.91894 1.03768 1.04014 1.21074 0.95185 0.94104 0.80917 1.21992 1.02571 0.92253 1.03783 1.22306 1.02739 1.01359 0.95751 1.50797 1.42444 1.05237 1.15490 1.23240 0.98535 0.86861 0.98068 1.21643 1.12186 0.93951 0.95631 1.16805 0.78127 0.85566 0.81632 1.90812 1.51944 1.34442 1.64797 1.45945 1.61418 1.11395 1.16735 1.22304 1.01697 0.82604 0.94966 1.21132 0.93661 0.90462 0.90436 0.94327 1.22607 0.95819 0.98697 0.99306 1.23006 0.98013 0.99803 0.97903 1.21459 0.82111 0.90423 1.01268 1.44486 1.02670 1.19945 1.64191 1.18997 0.88462 0.91624 1.36946 0.90620 1.24907 0.96809 0.96573 1.01662 1.69941 1.18631 1.14693 1.52968 0.86147 0.81355 0.80318 0.78118 1.21425 1.21692 1.20595 1.74644 1.12981 0.98051 1.22341 1.81929 1.15814 1.17079 0.89801 0.91193 0.89677 0.91302 0.91205 0.90190 0.90616 0.91064 0.89430 0.91098 0.78325 0.76183 0.91272 0.91371 0.91847 0.92231 0.92380 0.92298 0.95659 0.90892 0.93645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.75 8.74 37.15 0.32 -0.43 16 2 C 0.17 1.00 1.25 -131.82 -0.16 0.84 16 3 C -0.15 -0.77 8.11 37.16 0.30 -0.47 16 4 C -0.16 -0.68 8.30 37.16 0.31 -0.37 16 5 N -0.35 -3.44 3.44 -48.36 -0.17 -3.61 16 6 C 0.09 0.98 10.43 -16.84 -0.18 0.81 16 7 C -0.09 -1.34 6.99 -83.55 -0.58 -1.93 16 8 C 0.60 10.15 7.82 -12.48 -0.10 10.06 16 9 O -0.54 -10.82 16.86 5.28 0.09 -10.73 16 10 N -0.71 -11.85 5.34 -61.35 -0.33 -12.18 16 11 C 0.11 2.19 5.08 -4.04 -0.02 2.17 16 12 C 0.15 3.11 3.21 -66.95 -0.21 2.89 16 13 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 14 C -0.13 -2.23 6.14 -24.90 -0.15 -2.38 16 15 C -0.15 -2.82 7.08 -24.59 -0.17 -2.99 16 16 C 0.17 4.18 5.42 -2.53 -0.01 4.16 16 17 N -0.59 -14.87 3.13 -162.57 -0.51 -15.38 16 18 C -0.23 -6.43 9.75 -15.06 -0.15 -6.58 16 19 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 20 C 0.00 -0.07 5.47 -17.43 -0.10 -0.16 16 21 N -0.92 -26.91 10.56 55.49 0.59 -26.33 16 22 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 N -0.21 -2.96 12.04 32.85 0.40 -2.57 16 27 N -0.07 -0.85 12.91 60.35 0.78 -0.07 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.48 8.06 -51.93 -0.42 0.06 16 34 H 0.07 0.28 7.44 -51.93 -0.39 -0.10 16 35 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.20 1.67 7.63 -52.49 -0.40 1.27 16 38 H 0.40 6.06 8.05 -40.82 -0.33 5.73 16 39 H 0.07 1.54 7.90 -51.93 -0.41 1.13 16 40 H 0.07 1.49 8.06 -51.93 -0.42 1.08 16 41 H 0.06 1.11 7.80 -51.93 -0.40 0.70 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 46 H 0.07 1.96 6.90 -51.93 -0.36 1.60 16 47 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 384.53 15.07 5.79 5.79 Total: -1.00 -33.38 384.53 -7.03 -40.41 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -7.74 Total: 1.74 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -0.91 Total: 5.62 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: 0.76 Total: -60.12 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.38 -7.03 -40.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027922838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.728 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds