Wall clock time and date at job start Fri Apr 10 2020 18:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50692 * 109.47512 * 2 1 4 4 C 1.36604 * 126.57984 * 270.02969 * 3 2 1 5 5 C 1.47524 * 125.76890 * 359.97438 * 4 3 2 6 6 O 1.21598 * 119.99909 * 0.02562 * 5 4 3 7 7 N 1.34765 * 120.00121 * 179.72638 * 5 4 3 8 8 C 1.46499 * 120.00289 * 180.27611 * 7 5 4 9 9 C 1.53001 * 109.47156 * 174.10025 * 8 7 5 10 10 H 1.09000 * 109.87726 * 56.82214 * 9 8 7 11 11 C 1.54329 * 109.88425 * 177.84156 * 9 8 7 12 12 C 1.55150 * 102.94703 * 141.60962 * 11 9 8 13 13 C 1.54917 * 101.57907 * 324.49722 * 12 11 9 14 14 N 1.47026 * 109.88058 * 295.64492 * 9 8 7 15 15 C 1.36935 * 125.64860 * 61.62434 * 14 9 8 16 16 H 1.08001 * 120.00145 * 324.03206 * 15 14 9 17 17 C 1.38816 * 119.99882 * 144.02676 * 15 14 9 18 18 N 1.31626 * 119.99672 * 162.32080 * 17 15 14 19 19 Si 1.86795 * 120.00319 * 342.32555 * 17 15 14 20 20 H 1.48506 * 109.47071 * 93.99977 * 19 17 15 21 21 H 1.48492 * 109.47206 * 213.99954 * 19 17 15 22 22 H 1.48498 * 109.47142 * 334.00583 * 19 17 15 23 23 N 1.34403 * 108.45907 * 180.25994 * 4 3 2 24 24 N 1.28765 * 109.52010 * 359.54993 * 23 4 3 25 25 N 1.34816 * 126.58219 * 90.02285 * 3 2 1 26 26 C 1.46495 * 126.59450 * 0.03837 * 25 3 2 27 27 C 1.53000 * 109.47218 * 90.00150 * 26 25 3 28 28 H 1.08997 * 109.47387 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46932 * 300.00373 * 1 2 3 30 30 H 1.08997 * 109.47282 * 59.99831 * 1 2 3 31 31 H 1.09003 * 109.47456 * 239.99613 * 2 1 3 32 32 H 1.09005 * 109.47015 * 120.00003 * 2 1 3 33 33 H 0.97003 * 120.00111 * 0.28207 * 7 5 4 34 34 H 1.09000 * 109.47562 * 294.09990 * 8 7 5 35 35 H 1.09000 * 109.46751 * 54.10389 * 8 7 5 36 36 H 1.08999 * 110.71962 * 259.97643 * 11 9 8 37 37 H 1.09001 * 110.71707 * 23.23877 * 11 9 8 38 38 H 1.08998 * 111.00724 * 82.56748 * 12 11 9 39 39 H 1.08997 * 111.00604 * 206.42688 * 12 11 9 40 40 H 1.09004 * 110.36564 * 155.84890 * 13 12 11 41 41 H 1.08998 * 110.36821 * 278.06008 * 13 12 11 42 42 H 0.96996 * 119.99917 * 180.02562 * 18 17 15 43 43 H 1.09006 * 109.47017 * 210.00129 * 26 25 3 44 44 H 1.09002 * 109.46909 * 329.99921 * 26 25 3 45 45 H 1.08995 * 109.47031 * 60.00013 * 27 26 25 46 46 H 1.09004 * 109.47272 * 180.02562 * 27 26 25 47 47 H 1.08997 * 109.47018 * 300.00129 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3032 2.1884 -1.0970 5 6 2.1539 1.7667 -2.5028 6 8 1.7578 0.6469 -2.7628 7 7 2.4508 2.6246 -3.4988 8 6 2.2967 2.2080 -4.8948 9 6 2.5554 3.4026 -5.8151 10 1 3.5468 3.8119 -5.6213 11 6 2.4487 2.9615 -7.2902 12 6 1.7505 4.1715 -7.9651 13 6 0.7838 4.6360 -6.8473 14 7 1.5326 4.4352 -5.5933 15 6 1.3117 5.1001 -4.4167 16 1 1.4267 4.5840 -3.4750 17 6 0.9402 6.4375 -4.4344 18 7 0.3963 6.9835 -3.3674 19 14 1.2120 7.4621 -5.9724 20 1 -0.0224 7.4530 -6.7979 21 1 1.5386 8.8582 -5.5858 22 1 2.3358 6.8897 -6.7564 23 7 2.7348 3.3907 -0.6790 24 7 2.7403 3.4221 0.6083 25 7 2.3006 2.1781 1.0826 26 6 2.1606 1.7779 2.4848 27 6 3.4720 1.1584 2.9719 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.7666 3.5181 -3.2914 34 1 3.0111 1.4157 -5.1185 35 1 1.2835 1.8392 -5.0541 36 1 3.4386 2.8002 -7.7169 37 1 1.8375 2.0636 -7.3809 38 1 2.4708 4.9527 -8.2081 39 1 1.2002 3.8598 -8.8529 40 1 0.5338 5.6892 -6.9754 41 1 -0.1213 4.0288 -6.8520 42 1 0.1363 7.9179 -3.3799 43 1 1.9250 2.6530 3.0906 44 1 1.3575 1.0464 2.5754 45 1 4.2750 1.8898 2.8813 46 1 3.3676 0.8602 4.0151 47 1 3.7075 0.2834 2.3661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028135102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:29 Heat of formation + Delta-G solvation = 80.574005 kcal Electronic energy + Delta-G solvation = -28204.805496 eV Core-core repulsion = 24425.509178 eV Total energy + Delta-G solvation = -3779.296318 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.04507 -38.99916 -37.72950 -35.74710 -34.14367 -33.59018 -32.56044 -30.62296 -30.01564 -29.90185 -28.91112 -25.37746 -24.61973 -23.99181 -23.54573 -22.49744 -20.87055 -20.31644 -19.84601 -19.45185 -17.77657 -16.73022 -16.20926 -15.91073 -15.80210 -15.34231 -14.72551 -14.66177 -14.58775 -14.26760 -13.94809 -13.54583 -13.43154 -13.10069 -12.88445 -12.69232 -12.50268 -12.43884 -12.24095 -12.22419 -11.91899 -11.83497 -11.41088 -11.27414 -11.22221 -11.21089 -10.84290 -10.71171 -10.64353 -10.41486 -10.14234 -10.05179 -9.77746 -9.53594 -9.43915 -8.90706 -8.50916 -8.25982 -6.76746 -5.91773 -3.37381 1.33614 2.11943 2.16494 3.35753 3.49911 3.55059 3.70763 3.85220 4.28762 4.30184 4.57319 4.57675 4.69072 4.83566 4.92068 4.99831 5.11689 5.18412 5.20237 5.20393 5.36680 5.39840 5.46697 5.52572 5.57633 5.64718 5.70721 5.77587 5.87896 6.00041 6.00850 6.11692 6.15980 6.20064 6.21175 6.30838 6.38538 6.44223 6.57360 6.63798 6.89608 6.91543 7.11521 7.94974 8.09259 8.36581 8.41259 8.77279 8.90591 9.71713 10.28812 11.22502 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.015822 B = 0.003903 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.225561 B = 7173.035165 C = 8268.105559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.061 4.061 3 C 0.118 3.882 4 C -0.095 4.095 5 C 0.600 3.400 6 O -0.558 6.558 7 N -0.690 5.690 8 C 0.117 3.883 9 C 0.142 3.858 10 H 0.049 0.951 11 C -0.120 4.120 12 C -0.136 4.136 13 C 0.118 3.882 14 N -0.601 5.601 15 C -0.257 4.257 16 H 0.095 0.905 17 C 0.037 3.963 18 N -0.898 5.898 19 Si 0.887 3.113 20 H -0.289 1.289 21 H -0.304 1.304 22 H -0.269 1.269 23 N -0.186 5.186 24 N -0.069 5.069 25 N -0.366 5.366 26 C 0.117 3.883 27 C -0.170 4.170 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.420 0.580 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.041 0.959 41 H 0.030 0.970 42 H 0.263 0.737 43 H 0.105 0.895 44 H 0.099 0.901 45 H 0.069 0.931 46 H 0.082 0.918 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.259 -14.816 7.297 17.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.100 4.100 3 C -0.020 4.020 4 C -0.235 4.235 5 C 0.384 3.616 6 O -0.437 6.437 7 N -0.342 5.342 8 C -0.009 4.009 9 C 0.034 3.966 10 H 0.066 0.934 11 C -0.159 4.159 12 C -0.175 4.175 13 C -0.007 4.007 14 N -0.327 5.327 15 C -0.385 4.385 16 H 0.113 0.887 17 C -0.164 4.164 18 N -0.539 5.539 19 Si 0.719 3.281 20 H -0.217 1.217 21 H -0.233 1.233 22 H -0.194 1.194 23 N -0.059 5.059 24 N -0.048 5.048 25 N -0.152 5.152 26 C -0.004 4.004 27 C -0.228 4.228 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.134 0.866 32 H 0.092 0.908 33 H 0.260 0.740 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.073 0.927 43 H 0.124 0.876 44 H 0.117 0.883 45 H 0.088 0.912 46 H 0.100 0.900 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.413 -13.948 7.699 16.532 hybrid contribution -0.241 0.413 -0.694 0.843 sum 4.172 -13.535 7.005 15.801 Atomic orbital electron populations 1.21668 0.93272 1.02477 1.02607 1.20421 0.97209 0.87506 1.04887 1.21850 0.97497 0.96148 0.86512 1.21312 1.14449 0.92085 0.95616 1.16722 0.77675 0.84600 0.82635 1.90683 1.48832 1.20380 1.83823 1.46039 1.64961 1.17564 1.05620 1.21972 1.01152 0.97405 0.80334 1.21293 0.93750 0.89428 0.92090 0.93367 1.22480 1.00351 0.98074 0.94960 1.22782 0.99141 0.97776 0.97758 1.21884 0.93955 0.98372 0.86455 1.44698 1.34273 1.44681 1.09018 1.18742 1.44319 0.91312 0.84091 0.88742 1.25441 0.98225 0.96486 0.96275 1.69828 1.41463 1.13350 1.29285 0.86747 0.78471 0.78994 0.83912 1.21689 1.23279 1.19389 1.74746 1.10145 1.17301 1.03726 1.82023 1.20293 0.98751 1.03737 1.50471 1.46213 1.11323 1.07159 1.21913 0.99811 1.01968 0.76743 1.22186 0.96791 1.01740 1.02113 0.91380 0.93275 0.91219 0.86632 0.90806 0.73952 0.92723 0.91486 0.91433 0.91249 0.91625 0.91598 0.94137 0.95165 0.92725 0.87644 0.88318 0.91202 0.89967 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.89 37.16 0.37 -1.20 16 2 C -0.06 -0.70 5.43 -27.89 -0.15 -0.85 16 3 C 0.12 1.76 6.27 -81.88 -0.51 1.25 16 4 C -0.10 -1.79 6.99 -83.55 -0.58 -2.38 16 5 C 0.60 11.91 7.82 -12.48 -0.10 11.81 16 6 O -0.56 -11.17 14.71 5.28 0.08 -11.09 16 7 N -0.69 -14.00 4.36 -61.35 -0.27 -14.27 16 8 C 0.12 2.18 5.15 -4.04 -0.02 2.16 16 9 C 0.14 2.71 3.30 -66.95 -0.22 2.49 16 10 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 11 C -0.12 -1.86 6.48 -24.90 -0.16 -2.02 16 12 C -0.14 -2.31 7.09 -24.58 -0.17 -2.48 16 13 C 0.12 2.53 6.24 -2.53 -0.02 2.51 16 14 N -0.60 -14.11 2.67 -162.56 -0.43 -14.54 16 15 C -0.26 -7.09 9.50 -15.06 -0.14 -7.24 16 16 H 0.10 2.76 5.53 -52.49 -0.29 2.47 16 17 C 0.04 1.07 5.45 -17.43 -0.10 0.97 16 18 N -0.90 -27.80 13.97 55.49 0.78 -27.02 16 19 Si 0.89 22.69 24.83 -169.99 -4.22 18.46 16 20 H -0.29 -7.27 6.81 56.52 0.38 -6.89 16 21 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 22 H -0.27 -6.63 7.06 56.52 0.40 -6.24 16 23 N -0.19 -3.81 12.04 32.85 0.40 -3.42 16 24 N -0.07 -1.25 13.78 60.35 0.83 -0.42 16 25 N -0.37 -5.08 3.63 -56.85 -0.21 -5.29 16 26 C 0.12 0.98 6.87 -4.04 -0.03 0.95 16 27 C -0.17 -1.14 10.24 37.16 0.38 -0.76 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.12 1.49 6.43 -51.93 -0.33 1.16 16 32 H 0.07 0.60 7.82 -51.93 -0.41 0.19 16 33 H 0.42 9.22 6.00 -40.82 -0.24 8.97 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.34 8.12 -51.93 -0.42 0.92 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.04 0.95 3.22 -51.93 -0.17 0.78 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 43 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.10 0.60 7.76 -51.93 -0.40 0.19 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 374.57 15.07 5.64 5.64 Total: -1.00 -34.35 374.57 -6.19 -40.54 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -7.32 Total: 6.17 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -1.46 Total: 5.23 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: 1.09 Total: -64.96 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.09 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.22 Total: 18.46 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.35 -6.19 -40.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028135102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.112 kcal (2) G-P(sol) polarization free energy of solvation -34.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds