Wall clock time and date at job start Fri Apr 10 2020 18:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50692 * 109.47512 * 2 1 4 4 C 1.36604 * 126.57984 * 270.02969 * 3 2 1 5 5 C 1.47524 * 125.76890 * 359.97438 * 4 3 2 6 6 O 1.21598 * 119.99909 * 0.02562 * 5 4 3 7 7 N 1.34765 * 120.00121 * 179.72638 * 5 4 3 8 8 C 1.46499 * 120.00289 * 180.27611 * 7 5 4 9 9 C 1.53001 * 109.47156 * 174.10025 * 8 7 5 10 10 H 1.09000 * 109.87726 * 56.82214 * 9 8 7 11 11 C 1.54329 * 109.88425 * 177.84156 * 9 8 7 12 12 C 1.55150 * 102.94703 * 141.60962 * 11 9 8 13 13 C 1.54917 * 101.57907 * 324.49722 * 12 11 9 14 14 N 1.47026 * 109.88058 * 295.64492 * 9 8 7 15 15 C 1.36935 * 125.64860 * 61.62434 * 14 9 8 16 16 H 1.08001 * 120.00145 * 324.03206 * 15 14 9 17 17 C 1.38816 * 119.99882 * 144.02676 * 15 14 9 18 18 N 1.31626 * 119.99672 * 162.32080 * 17 15 14 19 19 Si 1.86795 * 120.00319 * 342.32555 * 17 15 14 20 20 H 1.48506 * 109.47071 * 93.99977 * 19 17 15 21 21 H 1.48492 * 109.47206 * 213.99954 * 19 17 15 22 22 H 1.48498 * 109.47142 * 334.00583 * 19 17 15 23 23 N 1.34403 * 108.45907 * 180.25994 * 4 3 2 24 24 N 1.28765 * 109.52010 * 359.54993 * 23 4 3 25 25 N 1.34816 * 126.58219 * 90.02285 * 3 2 1 26 26 C 1.46495 * 126.59450 * 0.03837 * 25 3 2 27 27 C 1.53000 * 109.47218 * 90.00150 * 26 25 3 28 28 H 1.08997 * 109.47387 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46932 * 300.00373 * 1 2 3 30 30 H 1.08997 * 109.47282 * 59.99831 * 1 2 3 31 31 H 1.09003 * 109.47456 * 239.99613 * 2 1 3 32 32 H 1.09005 * 109.47015 * 120.00003 * 2 1 3 33 33 H 0.97003 * 120.00111 * 0.28207 * 7 5 4 34 34 H 1.09000 * 109.47562 * 294.09990 * 8 7 5 35 35 H 1.09000 * 109.46751 * 54.10389 * 8 7 5 36 36 H 1.08999 * 110.71962 * 259.97643 * 11 9 8 37 37 H 1.09001 * 110.71707 * 23.23877 * 11 9 8 38 38 H 1.08998 * 111.00724 * 82.56748 * 12 11 9 39 39 H 1.08997 * 111.00604 * 206.42688 * 12 11 9 40 40 H 1.09004 * 110.36564 * 155.84890 * 13 12 11 41 41 H 1.08998 * 110.36821 * 278.06008 * 13 12 11 42 42 H 0.96996 * 119.99917 * 180.02562 * 18 17 15 43 43 H 1.09006 * 109.47017 * 210.00129 * 26 25 3 44 44 H 1.09002 * 109.46909 * 329.99921 * 26 25 3 45 45 H 1.08995 * 109.47031 * 60.00013 * 27 26 25 46 46 H 1.09004 * 109.47272 * 180.02562 * 27 26 25 47 47 H 1.08997 * 109.47018 * 300.00129 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3032 2.1884 -1.0970 5 6 2.1539 1.7667 -2.5028 6 8 1.7578 0.6469 -2.7628 7 7 2.4508 2.6246 -3.4988 8 6 2.2967 2.2080 -4.8948 9 6 2.5554 3.4026 -5.8151 10 1 3.5468 3.8119 -5.6213 11 6 2.4487 2.9615 -7.2902 12 6 1.7505 4.1715 -7.9651 13 6 0.7838 4.6360 -6.8473 14 7 1.5326 4.4352 -5.5933 15 6 1.3117 5.1001 -4.4167 16 1 1.4267 4.5840 -3.4750 17 6 0.9402 6.4375 -4.4344 18 7 0.3963 6.9835 -3.3674 19 14 1.2120 7.4621 -5.9724 20 1 -0.0224 7.4530 -6.7979 21 1 1.5386 8.8582 -5.5858 22 1 2.3358 6.8897 -6.7564 23 7 2.7348 3.3907 -0.6790 24 7 2.7403 3.4221 0.6083 25 7 2.3006 2.1781 1.0826 26 6 2.1606 1.7779 2.4848 27 6 3.4720 1.1584 2.9719 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.7666 3.5181 -3.2914 34 1 3.0111 1.4157 -5.1185 35 1 1.2835 1.8392 -5.0541 36 1 3.4386 2.8002 -7.7169 37 1 1.8375 2.0636 -7.3809 38 1 2.4708 4.9527 -8.2081 39 1 1.2002 3.8598 -8.8529 40 1 0.5338 5.6892 -6.9754 41 1 -0.1213 4.0288 -6.8520 42 1 0.1363 7.9179 -3.3799 43 1 1.9250 2.6530 3.0906 44 1 1.3575 1.0464 2.5754 45 1 4.2750 1.8898 2.8813 46 1 3.3676 0.8602 4.0151 47 1 3.7075 0.2834 2.3661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028135102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:28 Heat of formation + Delta-G solvation = 55.447199 kcal Electronic energy + Delta-G solvation = -28205.895076 eV Core-core repulsion = 24425.509178 eV Total energy + Delta-G solvation = -3780.385898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.31721 -40.54414 -39.30981 -36.80011 -35.51502 -34.71921 -34.60126 -31.75855 -31.69478 -31.23020 -30.29750 -26.79034 -26.02204 -25.43038 -24.66349 -23.84698 -22.34695 -21.46224 -21.34985 -20.94113 -19.36628 -18.31330 -17.90297 -17.21970 -17.05151 -16.83198 -16.36340 -15.86253 -15.68685 -15.53415 -15.20799 -14.87084 -14.82890 -14.74037 -14.23846 -13.97637 -13.74802 -13.72488 -13.59451 -13.35102 -13.13492 -13.02560 -12.92705 -12.67549 -12.59942 -12.30787 -12.24503 -12.23149 -12.00668 -11.80289 -11.71167 -11.49741 -11.36654 -11.17252 -10.97486 -10.64655 -10.26691 -9.82544 -8.71922 -8.13144 -5.54506 0.13384 0.66476 1.13477 1.29805 1.39731 1.51492 2.22008 2.38609 2.45929 3.09074 3.19693 3.37431 3.43468 3.55324 3.74182 3.94366 3.95621 4.01814 4.12770 4.17940 4.26905 4.27860 4.34360 4.41702 4.51055 4.54302 4.63988 4.71350 4.76044 4.77943 4.88866 4.92842 4.93652 5.02018 5.02942 5.13908 5.17400 5.18461 5.29927 5.34130 5.50711 5.53892 5.60564 5.92629 6.26388 6.53151 6.87251 6.95526 7.21982 7.58698 8.23609 9.05300 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.015822 B = 0.003903 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.225561 B = 7173.035165 C = 8268.105559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.057 4.057 3 C 0.134 3.866 4 C -0.132 4.132 5 C 0.596 3.404 6 O -0.564 6.564 7 N -0.701 5.701 8 C 0.121 3.879 9 C 0.136 3.864 10 H 0.045 0.955 11 C -0.107 4.107 12 C -0.125 4.125 13 C 0.105 3.895 14 N -0.618 5.618 15 C -0.237 4.237 16 H 0.069 0.931 17 C -0.027 4.027 18 N -0.952 5.952 19 Si 0.951 3.049 20 H -0.284 1.284 21 H -0.316 1.316 22 H -0.252 1.252 23 N -0.230 5.230 24 N -0.098 5.098 25 N -0.348 5.348 26 C 0.100 3.900 27 C -0.164 4.164 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.029 0.971 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.410 0.590 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.101 0.899 40 H 0.021 0.979 41 H 0.030 0.970 42 H 0.259 0.741 43 H 0.113 0.887 44 H 0.134 0.866 45 H 0.048 0.952 46 H 0.116 0.884 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.826 -17.726 6.765 19.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.096 4.096 3 C -0.006 4.006 4 C -0.272 4.272 5 C 0.381 3.619 6 O -0.445 6.445 7 N -0.351 5.351 8 C -0.003 4.003 9 C 0.030 3.970 10 H 0.063 0.937 11 C -0.145 4.145 12 C -0.163 4.163 13 C -0.019 4.019 14 N -0.344 5.344 15 C -0.366 4.366 16 H 0.086 0.914 17 C -0.223 4.223 18 N -0.597 5.597 19 Si 0.782 3.218 20 H -0.212 1.212 21 H -0.245 1.245 22 H -0.177 1.177 23 N -0.102 5.102 24 N -0.077 5.077 25 N -0.134 5.134 26 C -0.019 4.019 27 C -0.222 4.222 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.120 0.880 32 H 0.139 0.861 33 H 0.248 0.752 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.120 0.880 40 H 0.039 0.961 41 H 0.048 0.952 42 H 0.068 0.932 43 H 0.132 0.868 44 H 0.152 0.848 45 H 0.067 0.933 46 H 0.135 0.865 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.004 -16.895 7.151 19.016 hybrid contribution -0.452 1.140 -0.377 1.283 sum 4.551 -15.755 6.774 17.744 Atomic orbital electron populations 1.21662 0.92736 1.03942 1.01359 1.20588 0.97398 0.85090 1.06495 1.22364 0.95451 0.97187 0.85596 1.21475 1.16781 0.92785 0.96199 1.16937 0.77287 0.84494 0.83214 1.90653 1.49233 1.20414 1.84176 1.46165 1.65239 1.17115 1.06555 1.21987 1.00925 0.97853 0.79581 1.21544 0.92206 0.88179 0.95105 0.93714 1.22511 1.02590 0.97993 0.91445 1.22756 0.98214 0.98102 0.97248 1.22073 0.95268 0.97363 0.87234 1.44846 1.36089 1.45016 1.08490 1.18738 1.41481 0.91243 0.85159 0.91404 1.26078 0.99173 0.97907 0.99097 1.69978 1.44477 1.13414 1.31866 0.85712 0.78876 0.76643 0.80607 1.21182 1.24550 1.17655 1.74702 1.11800 1.18767 1.04930 1.81873 1.21585 1.01122 1.03097 1.50863 1.43869 1.09687 1.08936 1.22577 1.02140 1.03465 0.73698 1.22180 0.94863 1.00967 1.04149 0.88538 0.91772 0.95217 0.88011 0.86125 0.75226 0.89987 0.93073 0.88009 0.89433 0.91762 0.88015 0.96136 0.95190 0.93204 0.86829 0.84775 0.93252 0.86541 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.89 71.98 0.71 -2.08 16 2 C -0.06 -1.17 5.43 29.84 0.16 -1.01 16 3 C 0.13 3.96 6.27 41.72 0.26 4.22 16 4 C -0.13 -5.19 6.99 40.82 0.29 -4.90 16 5 C 0.60 24.58 7.82 86.69 0.68 25.26 16 6 O -0.56 -22.97 14.71 -4.02 -0.06 -23.03 16 7 N -0.70 -29.55 4.36 -466.29 -2.03 -31.58 16 8 C 0.12 4.48 5.15 86.38 0.44 4.92 16 9 C 0.14 5.04 3.30 45.34 0.15 5.19 16 10 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 11 C -0.11 -2.90 6.48 31.78 0.21 -2.70 16 12 C -0.13 -3.77 7.09 31.99 0.23 -3.54 16 13 C 0.10 4.36 6.24 86.86 0.54 4.90 16 14 N -0.62 -29.05 2.67 -668.22 -1.79 -30.84 16 15 C -0.24 -13.57 9.50 84.03 0.80 -12.77 16 16 H 0.07 4.22 5.53 -2.91 -0.02 4.20 16 17 C -0.03 -1.61 5.45 84.86 0.46 -1.15 16 18 N -0.95 -62.09 13.97 21.65 0.30 -61.79 16 19 Si 0.95 48.31 24.83 68.60 1.70 50.02 16 20 H -0.28 -14.01 6.81 99.48 0.68 -13.33 16 21 H -0.32 -16.46 7.11 99.48 0.71 -15.75 16 22 H -0.25 -11.93 7.06 99.48 0.70 -11.23 16 23 N -0.23 -10.01 12.04 -49.99 -0.60 -10.61 16 24 N -0.10 -3.71 13.78 37.02 0.51 -3.20 16 25 N -0.35 -9.45 3.63 -333.78 -1.21 -10.66 16 26 C 0.10 1.42 6.87 86.38 0.59 2.01 16 27 C -0.16 -1.73 10.24 71.98 0.74 -0.99 16 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 2.48 6.43 -2.39 -0.02 2.47 16 32 H 0.12 1.39 7.82 -2.38 -0.02 1.37 16 33 H 0.41 19.13 6.00 -92.71 -0.56 18.57 16 34 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.05 2.04 8.12 -2.39 -0.02 2.02 16 36 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.09 2.10 7.85 -2.39 -0.02 2.08 16 38 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.02 0.95 3.22 -2.38 -0.01 0.94 16 41 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 43 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 44 H 0.13 1.02 7.76 -2.39 -0.02 1.00 16 45 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -81.61 374.57 3.48 -78.13 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 0.39 Total: 26.20 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 6.26 Total: 17.36 kcal Atomic # 7 Polarization: -143.86 SS G_CDS: -4.82 Total: -148.68 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.06 Total: -23.03 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 1.70 Total: 50.02 kcal Total: -81.61 3.48 -78.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028135102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.576 kcal (2) G-P(sol) polarization free energy of solvation -81.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds