Wall clock time and date at job start Fri Apr 10 2020 18:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86804 * 119.99868 * 2 1 4 4 H 1.48498 * 109.47506 * 274.98856 * 3 2 1 5 5 H 1.48501 * 109.46895 * 34.99175 * 3 2 1 6 6 H 1.48504 * 109.46927 * 154.98591 * 3 2 1 7 7 C 1.38813 * 120.00235 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00182 * 187.05882 * 7 2 1 9 9 N 1.36933 * 120.00011 * 7.06089 * 7 2 1 10 10 C 1.47023 * 125.64672 * 354.87054 * 9 7 2 11 11 C 1.54321 * 107.27112 * 178.92324 * 10 9 7 12 12 C 1.55158 * 102.94187 * 337.80651 * 11 10 9 13 13 H 1.09004 * 111.00132 * 277.38848 * 12 11 10 14 14 C 1.52995 * 111.00261 * 153.57967 * 12 11 10 15 15 N 1.46502 * 109.47366 * 175.00056 * 14 12 11 16 16 C 1.34772 * 120.00363 * 179.97438 * 15 14 12 17 17 O 1.21284 * 120.00064 * 359.97438 * 16 15 14 18 18 C 1.51499 * 119.99736 * 180.02562 * 16 15 14 19 19 C 1.52482 * 108.84820 * 299.17397 * 18 16 15 20 20 C 1.52157 * 112.55468 * 188.59480 * 19 18 16 21 21 C 1.52252 * 112.63670 * 45.33547 * 20 19 18 22 22 N 1.45823 * 112.41654 * 313.32209 * 21 20 19 23 23 C 1.45854 * 113.95197 * 289.12951 * 22 21 20 24 24 C 1.52249 * 112.32644 * 70.53956 * 23 22 21 25 25 C 1.52152 * 112.64060 * 46.85679 * 24 23 22 26 26 C 1.46485 * 112.09616 * 57.58806 * 22 21 20 27 27 C 1.47419 * 125.65054 * 174.85062 * 9 7 2 28 28 H 0.96999 * 120.00120 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.88469 * 59.50379 * 10 9 7 30 30 H 1.09005 * 110.01628 * 298.41233 * 10 9 7 31 31 H 1.08997 * 110.72022 * 219.44360 * 11 10 9 32 32 H 1.09002 * 110.87686 * 96.24539 * 11 10 9 33 33 H 1.09006 * 109.47175 * 295.00071 * 14 12 11 34 34 H 1.09002 * 109.47505 * 54.99870 * 14 12 11 35 35 H 0.97003 * 119.99690 * 359.97438 * 15 14 12 36 36 H 1.09698 * 109.00428 * 309.92111 * 19 18 16 37 37 H 1.09664 * 109.10350 * 67.10401 * 19 18 16 38 38 H 1.08715 * 110.89992 * 280.51118 * 20 19 18 39 39 H 1.10565 * 108.01831 * 164.42177 * 20 19 18 40 40 H 1.09654 * 109.09728 * 191.95987 * 21 20 19 41 41 H 1.09652 * 109.11031 * 74.69833 * 21 20 19 42 42 H 1.09654 * 109.18526 * 191.70097 * 23 22 21 43 43 H 1.09612 * 109.29165 * 309.21028 * 23 22 21 44 44 H 1.10571 * 107.89776 * 166.01095 * 24 23 22 45 45 H 1.08715 * 110.80957 * 281.96963 * 24 23 22 46 46 H 1.09708 * 109.22957 * 193.50547 * 25 24 23 47 47 H 1.09723 * 109.20957 * 76.22808 * 25 24 23 48 48 H 1.08886 * 109.90452 * 175.88959 * 26 22 21 49 49 H 1.08874 * 109.94805 * 54.84540 * 26 22 21 50 50 H 1.08997 * 110.37130 * 85.30859 * 27 9 7 51 51 H 1.08998 * 110.36786 * 322.98173 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 -1.3947 5 1 1.5042 2.6199 0.8029 6 1 3.5964 1.4121 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0841 -1.2057 0.1144 9 7 1.3334 -2.3835 -0.1468 10 6 -0.1282 -2.5321 -0.2052 11 6 -0.4286 -4.0328 -0.4027 12 6 0.8920 -4.5744 -1.0111 13 1 0.9276 -4.3989 -2.0863 14 6 1.0725 -6.0604 -0.6948 15 7 2.2638 -6.5649 -1.3822 16 6 2.6227 -7.8570 -1.2484 17 8 1.9596 -8.6022 -0.5585 18 6 3.8550 -8.3784 -1.9589 19 6 3.6658 -8.2081 -3.4624 20 6 4.7595 -8.8920 -4.2694 21 6 5.0646 -10.2974 -3.7697 22 7 5.2100 -10.3528 -2.3198 23 6 6.4257 -9.7191 -1.8220 24 6 6.3838 -8.2030 -1.9550 25 6 5.0730 -7.6078 -1.4623 26 6 4.0149 -9.8651 -1.6272 27 6 1.9495 -3.7169 -0.2723 28 1 -0.4850 0.8400 0.0004 29 1 -0.5256 -1.9609 -1.0442 30 1 -0.5761 -2.1837 0.7255 31 1 -1.2582 -4.1721 -1.0959 32 1 -0.6401 -4.5154 0.5515 33 1 1.1911 -6.1911 0.3809 34 1 0.1962 -6.6131 -1.0335 35 1 2.7944 -5.9688 -1.9337 36 1 2.6920 -8.6237 -3.7492 37 1 3.6528 -7.1383 -3.7035 38 1 5.6617 -8.2858 -4.2915 39 1 4.4133 -8.9709 -5.3164 40 1 5.9895 -10.6524 -4.2398 41 1 4.2566 -10.9714 -4.0783 42 1 6.5634 -9.9831 -0.7666 43 1 7.2886 -10.1055 -2.3765 44 1 7.2020 -7.7852 -1.3398 45 1 6.5869 -7.8994 -2.9789 46 1 5.0001 -6.5662 -1.7987 47 1 5.0695 -7.6007 -0.3651 48 1 4.1329 -9.9895 -0.5519 49 1 3.1381 -10.4127 -1.9688 50 1 2.1548 -4.1342 0.7135 51 1 2.8665 -3.6574 -0.8585 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028624270.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:45 Heat of formation + Delta-G solvation = -22.640286 kcal Electronic energy + Delta-G solvation = -28484.984089 eV Core-core repulsion = 24804.752406 eV Total energy + Delta-G solvation = -3680.231682 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.34436 -39.01424 -37.60098 -34.74103 -33.75677 -33.42643 -32.38659 -31.07114 -29.78774 -28.29473 -26.72927 -25.73020 -24.44015 -23.62113 -22.89749 -21.80960 -20.64627 -20.00629 -19.71885 -18.72617 -17.35292 -16.77317 -16.17989 -15.99743 -15.42233 -15.33456 -14.89685 -14.73868 -14.59697 -14.22659 -13.98131 -13.64416 -13.59531 -13.21976 -13.09718 -12.84237 -12.64471 -12.36240 -12.03345 -11.87516 -11.79002 -11.72899 -11.62183 -11.38818 -11.35545 -11.19358 -10.92511 -10.91820 -10.83168 -10.39706 -10.15656 -10.14372 -10.02243 -9.89569 -9.70355 -9.56140 -8.95893 -8.60317 -8.35232 -6.85748 -5.75196 -3.07622 2.64277 3.17709 3.37532 3.42691 3.44964 3.71723 4.27782 4.34600 4.35342 4.46929 4.61093 4.66901 4.81492 4.83479 4.88730 5.06927 5.09628 5.15851 5.20457 5.22641 5.36199 5.41929 5.45238 5.51498 5.53861 5.59411 5.64527 5.66571 5.72678 5.75080 5.76741 5.84801 5.87707 5.99081 6.03274 6.04672 6.05322 6.32255 6.43467 6.47488 6.51551 6.66742 6.85824 6.88437 7.00516 7.53044 7.53985 7.61121 7.80109 8.23240 8.23734 9.19091 9.79788 10.46362 11.36966 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.020135 B = 0.002748 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.310537 B =10186.452126 C =10958.316407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.176 3.824 11 C -0.135 4.135 12 C -0.117 4.117 13 H 0.078 0.922 14 C 0.132 3.868 15 N -0.722 5.722 16 C 0.521 3.479 17 O -0.543 6.543 18 C -0.104 4.104 19 C -0.101 4.101 20 C -0.152 4.152 21 C 0.066 3.934 22 N -0.546 5.546 23 C 0.065 3.935 24 C -0.151 4.151 25 C -0.102 4.102 26 C 0.092 3.908 27 C 0.143 3.857 28 H 0.252 0.748 29 H 0.047 0.953 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.400 0.600 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.018 0.982 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.233 -19.910 -8.310 23.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.137 4.137 13 H 0.097 0.903 14 C 0.008 3.992 15 N -0.372 5.372 16 C 0.306 3.694 17 O -0.420 6.420 18 C -0.109 4.109 19 C -0.139 4.139 20 C -0.191 4.191 21 C -0.062 4.062 22 N -0.266 5.266 23 C -0.063 4.063 24 C -0.191 4.191 25 C -0.140 4.140 26 C -0.036 4.036 27 C 0.017 3.983 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.234 0.766 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.102 0.898 49 H 0.101 0.899 50 H 0.036 0.964 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 9.744 -20.675 -7.674 24.111 hybrid contribution 0.546 2.327 -0.485 2.439 sum 10.291 -18.348 -8.159 22.564 Atomic orbital electron populations 1.69975 1.04932 1.25069 1.56691 1.24823 0.95695 0.97682 1.02136 0.86128 0.78701 0.83636 0.77495 1.21614 1.21733 1.20636 1.19050 0.91094 0.82603 1.43153 0.90498 1.44479 1.01738 1.00932 1.86100 1.21147 0.84424 0.88404 1.00847 1.22850 0.95274 0.99650 0.99577 1.22607 0.98598 0.91919 1.00567 0.90325 1.21411 0.86748 0.93851 0.97198 1.46122 1.29504 1.10571 1.51040 1.20672 0.85723 0.81951 0.81052 1.90690 1.54482 1.56685 1.40121 1.21298 0.93696 0.99676 0.96247 1.21283 0.99332 1.01371 0.91939 1.21993 0.99323 0.98025 0.99715 1.21772 1.02282 0.95146 0.87026 1.60245 1.02851 1.58181 1.05338 1.21786 0.91960 0.91315 1.01204 1.21987 0.97186 0.97545 1.02333 1.21285 0.92530 0.98917 1.01304 1.21788 0.92478 0.89791 0.99569 1.21566 0.94022 0.86654 0.96057 0.93727 0.93442 0.94079 0.92016 0.92204 0.91376 0.91724 0.76557 0.91578 0.91474 0.91215 0.91804 0.90943 0.90903 0.90842 0.90917 0.91698 0.91272 0.91374 0.91426 0.89812 0.89871 0.96406 0.94721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.96 10.36 55.49 0.57 -26.38 16 2 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 21.95 29.56 -169.99 -5.02 16.93 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.23 -6.40 10.27 -15.06 -0.15 -6.56 16 8 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 9 N -0.61 -15.32 3.39 -170.08 -0.58 -15.90 16 10 C 0.18 4.24 5.38 -3.06 -0.02 4.23 16 11 C -0.13 -2.44 6.42 -24.90 -0.16 -2.60 16 12 C -0.12 -1.92 3.05 -88.47 -0.27 -2.19 16 13 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 14 C 0.13 1.89 5.13 -4.04 -0.02 1.87 16 15 N -0.72 -9.04 5.31 -60.00 -0.32 -9.36 16 16 C 0.52 6.80 6.35 -10.59 -0.07 6.74 16 17 O -0.54 -9.01 15.92 5.55 0.09 -8.92 16 18 C -0.10 -1.04 0.57 -155.73 -0.09 -1.12 16 19 C -0.10 -0.87 4.51 -27.43 -0.12 -0.99 16 20 C -0.15 -1.07 5.13 -27.54 -0.14 -1.22 16 21 C 0.07 0.48 5.77 -4.79 -0.03 0.46 16 22 N -0.55 -4.78 4.79 -236.55 -1.13 -5.91 16 23 C 0.07 0.50 5.77 -4.77 -0.03 0.47 16 24 C -0.15 -1.14 5.13 -27.55 -0.14 -1.28 16 25 C -0.10 -0.93 4.51 -27.45 -0.12 -1.06 16 26 C 0.09 0.96 4.18 -3.97 -0.02 0.94 16 27 C 0.14 2.85 6.65 -2.53 -0.02 2.84 16 28 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.05 1.26 7.30 -51.93 -0.38 0.88 16 30 H 0.04 1.10 7.61 -51.93 -0.40 0.70 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 1.03 8.04 -51.93 -0.42 0.62 16 33 H 0.07 1.06 7.96 -51.93 -0.41 0.65 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.40 4.41 7.58 -40.82 -0.31 4.10 16 36 H 0.07 0.61 8.14 -51.53 -0.42 0.19 16 37 H 0.07 0.55 7.80 -51.55 -0.40 0.15 16 38 H 0.07 0.48 5.70 -52.09 -0.30 0.18 16 39 H 0.06 0.40 8.27 -51.03 -0.42 -0.02 16 40 H 0.07 0.46 8.11 -51.56 -0.42 0.04 16 41 H 0.07 0.54 8.20 -51.56 -0.42 0.11 16 42 H 0.07 0.57 8.20 -51.56 -0.42 0.15 16 43 H 0.07 0.47 8.10 -51.58 -0.42 0.05 16 44 H 0.06 0.45 8.27 -51.03 -0.42 0.03 16 45 H 0.07 0.49 5.70 -52.09 -0.30 0.19 16 46 H 0.07 0.61 7.81 -51.53 -0.40 0.20 16 47 H 0.07 0.69 8.14 -51.52 -0.42 0.27 16 48 H 0.08 0.96 8.07 -51.99 -0.42 0.54 16 49 H 0.08 0.94 8.08 -52.00 -0.42 0.52 16 50 H 0.02 0.37 7.91 -51.93 -0.41 -0.04 16 51 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 378.61 15.07 5.71 5.71 Total: -1.00 -31.52 378.61 -11.34 -42.86 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -9.16 Total: 0.75 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -1.49 Total: 0.23 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -1.45 Total: -57.55 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.52 -11.34 -42.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028624270.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.219 kcal (2) G-P(sol) polarization free energy of solvation -31.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds