Wall clock time and date at job start Fri Apr 10 2020 18:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86804 * 119.99868 * 2 1 4 4 H 1.48498 * 109.47506 * 274.98856 * 3 2 1 5 5 H 1.48501 * 109.46895 * 34.99175 * 3 2 1 6 6 H 1.48504 * 109.46927 * 154.98591 * 3 2 1 7 7 C 1.38813 * 120.00235 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00182 * 187.05882 * 7 2 1 9 9 N 1.36933 * 120.00011 * 7.06089 * 7 2 1 10 10 C 1.47023 * 125.64672 * 354.87054 * 9 7 2 11 11 C 1.54321 * 107.27112 * 178.92324 * 10 9 7 12 12 C 1.55158 * 102.94187 * 337.80651 * 11 10 9 13 13 H 1.09004 * 111.00132 * 277.38848 * 12 11 10 14 14 C 1.52995 * 111.00261 * 153.57967 * 12 11 10 15 15 N 1.46502 * 109.47366 * 175.00056 * 14 12 11 16 16 C 1.34772 * 120.00363 * 179.97438 * 15 14 12 17 17 O 1.21284 * 120.00064 * 359.97438 * 16 15 14 18 18 C 1.51499 * 119.99736 * 180.02562 * 16 15 14 19 19 C 1.52482 * 108.84820 * 299.17397 * 18 16 15 20 20 C 1.52157 * 112.55468 * 188.59480 * 19 18 16 21 21 C 1.52252 * 112.63670 * 45.33547 * 20 19 18 22 22 N 1.45823 * 112.41654 * 313.32209 * 21 20 19 23 23 C 1.45854 * 113.95197 * 289.12951 * 22 21 20 24 24 C 1.52249 * 112.32644 * 70.53956 * 23 22 21 25 25 C 1.52152 * 112.64060 * 46.85679 * 24 23 22 26 26 C 1.46485 * 112.09616 * 57.58806 * 22 21 20 27 27 C 1.47419 * 125.65054 * 174.85062 * 9 7 2 28 28 H 0.96999 * 120.00120 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.88469 * 59.50379 * 10 9 7 30 30 H 1.09005 * 110.01628 * 298.41233 * 10 9 7 31 31 H 1.08997 * 110.72022 * 219.44360 * 11 10 9 32 32 H 1.09002 * 110.87686 * 96.24539 * 11 10 9 33 33 H 1.09006 * 109.47175 * 295.00071 * 14 12 11 34 34 H 1.09002 * 109.47505 * 54.99870 * 14 12 11 35 35 H 0.97003 * 119.99690 * 359.97438 * 15 14 12 36 36 H 1.09698 * 109.00428 * 309.92111 * 19 18 16 37 37 H 1.09664 * 109.10350 * 67.10401 * 19 18 16 38 38 H 1.08715 * 110.89992 * 280.51118 * 20 19 18 39 39 H 1.10565 * 108.01831 * 164.42177 * 20 19 18 40 40 H 1.09654 * 109.09728 * 191.95987 * 21 20 19 41 41 H 1.09652 * 109.11031 * 74.69833 * 21 20 19 42 42 H 1.09654 * 109.18526 * 191.70097 * 23 22 21 43 43 H 1.09612 * 109.29165 * 309.21028 * 23 22 21 44 44 H 1.10571 * 107.89776 * 166.01095 * 24 23 22 45 45 H 1.08715 * 110.80957 * 281.96963 * 24 23 22 46 46 H 1.09708 * 109.22957 * 193.50547 * 25 24 23 47 47 H 1.09723 * 109.20957 * 76.22808 * 25 24 23 48 48 H 1.08886 * 109.90452 * 175.88959 * 26 22 21 49 49 H 1.08874 * 109.94805 * 54.84540 * 26 22 21 50 50 H 1.08997 * 110.37130 * 85.30859 * 27 9 7 51 51 H 1.08998 * 110.36786 * 322.98173 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 -1.3947 5 1 1.5042 2.6199 0.8029 6 1 3.5964 1.4121 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0841 -1.2057 0.1144 9 7 1.3334 -2.3835 -0.1468 10 6 -0.1282 -2.5321 -0.2052 11 6 -0.4286 -4.0328 -0.4027 12 6 0.8920 -4.5744 -1.0111 13 1 0.9276 -4.3989 -2.0863 14 6 1.0725 -6.0604 -0.6948 15 7 2.2638 -6.5649 -1.3822 16 6 2.6227 -7.8570 -1.2484 17 8 1.9596 -8.6022 -0.5585 18 6 3.8550 -8.3784 -1.9589 19 6 3.6658 -8.2081 -3.4624 20 6 4.7595 -8.8920 -4.2694 21 6 5.0646 -10.2974 -3.7697 22 7 5.2100 -10.3528 -2.3198 23 6 6.4257 -9.7191 -1.8220 24 6 6.3838 -8.2030 -1.9550 25 6 5.0730 -7.6078 -1.4623 26 6 4.0149 -9.8651 -1.6272 27 6 1.9495 -3.7169 -0.2723 28 1 -0.4850 0.8400 0.0004 29 1 -0.5256 -1.9609 -1.0442 30 1 -0.5761 -2.1837 0.7255 31 1 -1.2582 -4.1721 -1.0959 32 1 -0.6401 -4.5154 0.5515 33 1 1.1911 -6.1911 0.3809 34 1 0.1962 -6.6131 -1.0335 35 1 2.7944 -5.9688 -1.9337 36 1 2.6920 -8.6237 -3.7492 37 1 3.6528 -7.1383 -3.7035 38 1 5.6617 -8.2858 -4.2915 39 1 4.4133 -8.9709 -5.3164 40 1 5.9895 -10.6524 -4.2398 41 1 4.2566 -10.9714 -4.0783 42 1 6.5634 -9.9831 -0.7666 43 1 7.2886 -10.1055 -2.3765 44 1 7.2020 -7.7852 -1.3398 45 1 6.5869 -7.8994 -2.9789 46 1 5.0001 -6.5662 -1.7987 47 1 5.0695 -7.6007 -0.3651 48 1 4.1329 -9.9895 -0.5519 49 1 3.1381 -10.4127 -1.9688 50 1 2.1548 -4.1342 0.7135 51 1 2.8665 -3.6574 -0.8585 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028624270.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:44 Heat of formation + Delta-G solvation = -43.503120 kcal Electronic energy + Delta-G solvation = -28485.888769 eV Core-core repulsion = 24804.752406 eV Total energy + Delta-G solvation = -3681.136363 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.15953 -40.08301 -39.13404 -36.09586 -34.76229 -34.02484 -34.01059 -31.80837 -31.53850 -29.89640 -27.38656 -27.35977 -25.78677 -24.58394 -23.91681 -22.42270 -22.08765 -21.54811 -21.00461 -19.45287 -18.88483 -18.17390 -17.35500 -16.84243 -16.64644 -16.48119 -16.02842 -15.99201 -15.63317 -15.49132 -15.06082 -14.93291 -14.49889 -14.18548 -14.00042 -13.89924 -13.85506 -13.59964 -13.53486 -13.34861 -13.03688 -12.78302 -12.66546 -12.50952 -12.41759 -12.35265 -12.02180 -11.95508 -11.94311 -11.88407 -11.82125 -11.64392 -11.56959 -11.48828 -10.74488 -10.69907 -10.62787 -10.09027 -9.01451 -8.91131 -7.87513 -5.22035 1.45292 1.46852 1.55862 1.60778 2.14779 2.48441 3.05060 3.30553 3.48149 3.58608 3.62059 3.62695 3.79194 3.97754 3.99985 4.01046 4.06969 4.12204 4.22081 4.24243 4.41489 4.42402 4.50785 4.53548 4.59721 4.65354 4.71868 4.79783 4.83550 4.89583 4.95904 4.99491 5.00544 5.03266 5.05818 5.07454 5.09855 5.11718 5.16750 5.28762 5.32962 5.44981 5.46698 5.47094 5.65453 5.76363 6.17576 6.18680 6.40071 6.51471 7.08822 7.20464 7.76601 8.41538 9.23592 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.020135 B = 0.002748 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.310537 B =10186.452126 C =10958.316407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.977 3.023 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.244 4.244 8 H 0.083 0.917 9 N -0.629 5.629 10 C 0.182 3.818 11 C -0.123 4.123 12 C -0.094 4.094 13 H 0.090 0.910 14 C 0.144 3.856 15 N -0.714 5.714 16 C 0.520 3.480 17 O -0.581 6.581 18 C -0.094 4.094 19 C -0.100 4.100 20 C -0.147 4.147 21 C 0.063 3.937 22 N -0.552 5.552 23 C 0.063 3.937 24 C -0.147 4.147 25 C -0.102 4.102 26 C 0.096 3.904 27 C 0.140 3.860 28 H 0.247 0.753 29 H 0.015 0.985 30 H 0.001 0.999 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.410 0.590 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.051 0.949 48 H 0.065 0.935 49 H 0.069 0.931 50 H 0.016 0.984 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.265 -20.754 -10.006 26.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.806 3.194 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.373 4.373 8 H 0.101 0.899 9 N -0.355 5.355 10 C 0.057 3.943 11 C -0.162 4.162 12 C -0.114 4.114 13 H 0.108 0.892 14 C 0.019 3.981 15 N -0.365 5.365 16 C 0.306 3.694 17 O -0.461 6.461 18 C -0.099 4.099 19 C -0.138 4.138 20 C -0.186 4.186 21 C -0.065 4.065 22 N -0.272 5.272 23 C -0.064 4.064 24 C -0.186 4.186 25 C -0.140 4.140 26 C -0.033 4.033 27 C 0.015 3.985 28 H 0.056 0.944 29 H 0.033 0.967 30 H 0.019 0.981 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.246 0.754 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.070 0.930 48 H 0.084 0.916 49 H 0.088 0.912 50 H 0.033 0.967 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.819 -21.541 -9.391 26.304 hybrid contribution -0.073 2.540 0.090 2.543 sum 11.746 -19.001 -9.301 24.197 Atomic orbital electron populations 1.70197 1.06397 1.25305 1.58030 1.25678 0.96575 1.01097 1.02553 0.85075 0.77842 0.79171 0.77351 1.21203 1.22338 1.19172 1.19462 0.91654 0.83896 1.42290 0.89928 1.44809 1.02503 1.02243 1.85945 1.20917 0.83927 0.91925 0.97495 1.22716 0.97052 0.95336 1.01064 1.22403 0.95973 0.92464 1.00520 0.89201 1.21151 0.87877 0.92283 0.96742 1.46022 1.29027 1.10708 1.50787 1.21246 0.86153 0.81546 0.80420 1.90673 1.55934 1.57619 1.41864 1.21252 0.92406 0.99227 0.97019 1.21305 0.99684 1.02095 0.90728 1.21951 0.99063 0.97617 0.99966 1.21856 1.03113 0.95472 0.86032 1.60236 1.02438 1.58366 1.06204 1.21852 0.91916 0.91467 1.01211 1.21948 0.96228 0.97281 1.03098 1.21302 0.93010 0.99250 1.00393 1.21613 0.92903 0.90062 0.98679 1.21734 0.95379 0.84840 0.96572 0.94398 0.96699 0.98053 0.89627 0.91180 0.92530 0.90930 0.75391 0.92405 0.90650 0.90343 0.90512 0.89261 0.91202 0.91477 0.89148 0.90881 0.90107 0.90800 0.92969 0.91635 0.91246 0.96654 0.93374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.43 10.36 21.65 0.22 -57.20 16 2 C -0.07 -3.75 5.48 84.86 0.46 -3.29 16 3 Si 0.98 45.48 29.56 68.60 2.03 47.50 16 4 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.24 -13.61 10.27 84.03 0.86 -12.75 16 8 H 0.08 4.38 7.84 -2.91 -0.02 4.36 16 9 N -0.63 -31.98 3.39 -692.01 -2.35 -34.33 16 10 C 0.18 8.98 5.38 86.73 0.47 9.45 16 11 C -0.12 -4.34 6.42 31.78 0.20 -4.14 16 12 C -0.09 -2.91 3.05 -9.40 -0.03 -2.94 16 13 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 14 C 0.14 3.87 5.13 86.38 0.44 4.32 16 15 N -0.71 -16.66 5.31 -462.13 -2.45 -19.12 16 16 C 0.52 13.12 6.35 87.91 0.56 13.68 16 17 O -0.58 -19.28 15.92 -3.04 -0.05 -19.33 16 18 C -0.09 -1.75 0.57 -52.97 -0.03 -1.78 16 19 C -0.10 -1.49 4.51 30.14 0.14 -1.36 16 20 C -0.15 -1.64 5.13 30.07 0.15 -1.49 16 21 C 0.06 0.77 5.77 86.26 0.50 1.27 16 22 N -0.55 -8.79 4.79 -902.29 -4.32 -13.12 16 23 C 0.06 0.83 5.77 86.25 0.50 1.32 16 24 C -0.15 -1.82 5.13 30.07 0.15 -1.67 16 25 C -0.10 -1.67 4.51 30.13 0.14 -1.54 16 26 C 0.10 1.96 4.18 86.44 0.36 2.32 16 27 C 0.14 5.41 6.65 86.86 0.58 5.99 16 28 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.01 0.81 7.30 -2.39 -0.02 0.80 16 30 H 0.00 0.07 7.61 -2.38 -0.02 0.05 16 31 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.07 2.34 8.04 -2.39 -0.02 2.32 16 33 H 0.06 1.70 7.96 -2.38 -0.02 1.68 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.41 8.03 7.58 -92.71 -0.70 7.33 16 36 H 0.06 0.97 8.14 -2.01 -0.02 0.95 16 37 H 0.07 1.01 7.80 -2.03 -0.02 0.99 16 38 H 0.08 0.77 5.70 -2.54 -0.01 0.76 16 39 H 0.08 0.71 8.27 -1.54 -0.01 0.70 16 40 H 0.09 0.83 8.11 -2.04 -0.02 0.81 16 41 H 0.07 0.90 8.20 -2.04 -0.02 0.88 16 42 H 0.07 0.96 8.20 -2.04 -0.02 0.94 16 43 H 0.09 0.89 8.10 -2.06 -0.02 0.87 16 44 H 0.07 0.82 8.27 -1.54 -0.01 0.81 16 45 H 0.08 0.85 5.70 -2.54 -0.01 0.83 16 46 H 0.07 1.13 7.81 -2.01 -0.02 1.12 16 47 H 0.05 1.02 8.14 -2.00 -0.02 1.00 16 48 H 0.07 1.55 8.07 -2.45 -0.02 1.53 16 49 H 0.07 1.58 8.08 -2.45 -0.02 1.56 16 50 H 0.02 0.62 7.91 -2.39 -0.02 0.60 16 51 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -70.01 378.61 -1.23 -71.25 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.23 Total: 16.94 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 5.46 Total: 7.40 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -8.90 Total: -123.76 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.05 Total: -19.33 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -70.01 -1.23 -71.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028624270.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.744 kcal (2) G-P(sol) polarization free energy of solvation -70.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds