Wall clock time and date at job start Fri Apr 10 2020 18:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.46977 * 2 1 4 4 C 1.36600 * 126.58080 * 270.12807 * 3 2 1 5 5 C 1.47526 * 125.77058 * 0.06817 * 4 3 2 6 6 O 1.21592 * 119.99933 * 0.24432 * 5 4 3 7 7 N 1.34779 * 119.99953 * 180.24729 * 5 4 3 8 8 C 1.46499 * 120.00160 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47305 * 180.02562 * 8 7 5 10 10 H 1.08999 * 110.88818 * 51.12081 * 9 8 7 11 11 C 1.55155 * 111.00555 * 175.00166 * 9 8 7 12 12 C 1.54318 * 102.94619 * 153.57536 * 11 9 8 13 13 N 1.47028 * 107.26942 * 337.80748 * 12 11 9 14 14 C 1.36937 * 125.64691 * 178.91636 * 13 12 11 15 15 H 1.08008 * 119.99658 * 174.87407 * 14 13 12 16 16 C 1.38803 * 120.00178 * 354.87417 * 14 13 12 17 17 N 1.31623 * 120.00279 * 7.06356 * 16 14 13 18 18 Si 1.86804 * 120.00172 * 187.05961 * 16 14 13 19 19 H 1.48503 * 109.46839 * 94.98639 * 18 16 14 20 20 H 1.48493 * 109.47343 * 214.98649 * 18 16 14 21 21 H 1.48496 * 109.47026 * 334.98999 * 18 16 14 22 22 C 1.47426 * 108.70453 * 358.94180 * 13 12 11 23 23 N 1.34402 * 108.45715 * 180.25697 * 4 3 2 24 24 N 1.28759 * 109.52398 * 359.77180 * 23 4 3 25 25 N 1.34811 * 126.58028 * 90.00266 * 3 2 1 26 26 C 1.46501 * 126.59488 * 0.02562 * 25 3 2 27 27 C 1.53007 * 109.46976 * 269.71231 * 26 25 3 28 28 H 1.09000 * 109.47948 * 60.00118 * 1 2 3 29 29 H 1.09006 * 109.47214 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47138 * 299.99494 * 1 2 3 31 31 H 1.09005 * 109.47138 * 240.00505 * 2 1 3 32 32 H 1.08996 * 109.47645 * 120.00260 * 2 1 3 33 33 H 0.97000 * 119.99518 * 0.02562 * 7 5 4 34 34 H 1.09006 * 109.47086 * 300.00468 * 8 7 5 35 35 H 1.08998 * 109.46918 * 60.00118 * 8 7 5 36 36 H 1.08999 * 110.72161 * 271.94057 * 11 9 8 37 37 H 1.09004 * 110.72096 * 35.03254 * 11 9 8 38 38 H 1.09000 * 109.88302 * 97.21969 * 12 11 9 39 39 H 1.09002 * 109.88761 * 218.39002 * 12 11 9 40 40 H 0.97000 * 120.00093 * 180.02562 * 17 16 14 41 41 H 1.08998 * 110.36180 * 265.29142 * 22 13 12 42 42 H 1.08997 * 110.36852 * 142.96357 * 22 13 12 43 43 H 1.09000 * 109.46969 * 149.71408 * 26 25 3 44 44 H 1.08998 * 109.46894 * 29.71187 * 26 25 3 45 45 H 1.08998 * 109.46824 * 300.00013 * 27 26 25 46 46 H 1.09000 * 109.46673 * 59.99993 * 27 26 25 47 47 H 1.09005 * 109.46627 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3013 2.1892 -1.0969 5 6 2.1479 1.7690 -2.5027 6 8 1.7460 0.6513 -2.7628 7 7 2.4533 2.6241 -3.4988 8 6 2.3016 2.2067 -4.8948 9 6 2.7131 3.3551 -5.8181 10 1 3.6947 3.7416 -5.5440 11 6 2.6857 2.9109 -7.3045 12 6 2.4373 4.2353 -8.0566 13 7 1.8192 5.1691 -7.1038 14 6 1.4607 6.4630 -7.3730 15 1 0.9365 7.0440 -6.6286 16 6 1.7710 7.0277 -8.6024 17 7 2.2836 6.2824 -9.5585 18 14 1.4610 8.8457 -8.9001 19 1 2.7058 9.6102 -8.6331 20 1 1.0460 9.0526 -10.3107 21 1 0.3850 9.3193 -7.9929 22 6 1.6500 4.4818 -5.8106 23 7 2.7333 3.3912 -0.6789 24 7 2.7453 3.4204 0.6083 25 7 2.3001 2.1783 1.0826 26 6 2.1593 1.7783 2.4849 27 6 0.7524 2.1259 2.9756 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.7744 3.5155 -3.2912 34 1 2.9364 1.3415 -5.0865 35 1 1.2611 1.9428 -5.0841 36 1 3.6421 2.4760 -7.5948 37 1 1.8735 2.2057 -7.4813 38 1 3.3835 4.6420 -8.4134 39 1 1.7647 4.0639 -8.8971 40 1 2.5007 6.6772 -10.4175 41 1 0.6486 4.0580 -5.7345 42 1 1.8344 5.1719 -4.9873 43 1 2.8960 2.3074 3.0893 44 1 2.3201 0.7039 2.5741 45 1 0.5916 3.2003 2.8863 46 1 0.0157 1.5967 2.3710 47 1 0.6475 1.8279 4.0188 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028800400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:50 Heat of formation + Delta-G solvation = 70.606065 kcal Electronic energy + Delta-G solvation = -27048.777209 eV Core-core repulsion = 23269.048648 eV Total energy + Delta-G solvation = -3779.728561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.50746 -39.37503 -37.55870 -36.16786 -34.69289 -34.01898 -32.46718 -30.98716 -30.35083 -29.51823 -28.15868 -25.71042 -24.91536 -24.43611 -23.80179 -22.78772 -20.70448 -20.50626 -19.91237 -19.69879 -18.05319 -16.82324 -16.60351 -16.23660 -15.81769 -15.34159 -15.05754 -14.95886 -14.67060 -14.47020 -14.24403 -13.80741 -13.49005 -13.44064 -13.07607 -12.95063 -12.79186 -12.65877 -12.27502 -12.19287 -11.97034 -11.70374 -11.69986 -11.44839 -11.31601 -11.19719 -10.84698 -10.76112 -10.50557 -10.35954 -10.12193 -9.99359 -9.85877 -9.73979 -9.61633 -9.36943 -8.85688 -8.52534 -6.77111 -5.67469 -2.99281 0.91003 1.61059 1.74163 3.22908 3.28828 3.44143 3.49405 3.51253 3.89019 3.95886 4.26820 4.29437 4.46400 4.54426 4.56670 4.72716 4.86809 4.92623 5.06165 5.08450 5.17816 5.29063 5.32901 5.42606 5.50116 5.50784 5.59244 5.60607 5.73851 5.80848 5.90226 5.96221 6.09600 6.12542 6.16074 6.40999 6.49128 6.58096 6.60999 6.76193 6.98563 7.52603 7.61196 7.69245 7.83777 7.87832 8.23786 8.31435 9.27370 9.88008 10.54707 11.44833 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.020089 B = 0.002488 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.469708 B =11252.075471 C =12119.939974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.064 4.064 3 C 0.125 3.875 4 C -0.102 4.102 5 C 0.603 3.397 6 O -0.542 6.542 7 N -0.708 5.708 8 C 0.134 3.866 9 C -0.118 4.118 10 H 0.081 0.919 11 C -0.134 4.134 12 C 0.176 3.824 13 N -0.606 5.606 14 C -0.227 4.227 15 H 0.078 0.922 16 C -0.009 4.009 17 N -0.921 5.921 18 Si 0.910 3.090 19 H -0.289 1.289 20 H -0.292 1.292 21 H -0.281 1.281 22 C 0.141 3.859 23 N -0.201 5.201 24 N -0.068 5.068 25 N -0.361 5.361 26 C 0.116 3.884 27 C -0.174 4.174 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.117 0.883 32 H 0.077 0.923 33 H 0.410 0.590 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.041 0.959 40 H 0.252 0.748 41 H 0.019 0.981 42 H 0.038 0.962 43 H 0.106 0.894 44 H 0.101 0.899 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.450 -15.415 25.031 29.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 C -0.013 4.013 4 C -0.242 4.242 5 C 0.387 3.613 6 O -0.419 6.419 7 N -0.358 5.358 8 C 0.010 3.990 9 C -0.138 4.138 10 H 0.099 0.901 11 C -0.173 4.173 12 C 0.052 3.948 13 N -0.333 5.333 14 C -0.355 4.355 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.568 5.568 18 Si 0.740 3.260 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.206 1.206 22 C 0.015 3.985 23 N -0.074 5.074 24 N -0.047 5.047 25 N -0.147 5.147 26 C -0.005 4.005 27 C -0.232 4.232 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.135 0.865 32 H 0.095 0.905 33 H 0.245 0.755 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.037 0.963 42 H 0.056 0.944 43 H 0.125 0.875 44 H 0.119 0.881 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.223 -14.636 25.061 29.023 hybrid contribution -0.258 0.605 -0.157 0.676 sum -0.481 -14.030 24.904 28.589 Atomic orbital electron populations 1.21733 0.93036 1.02896 1.02502 1.20475 0.97369 0.87240 1.05247 1.21941 0.96713 0.96215 0.86383 1.21275 1.15090 0.92281 0.95547 1.16704 0.77579 0.84595 0.82457 1.90747 1.47525 1.20001 1.83644 1.45885 1.66164 1.17536 1.06195 1.21458 1.01793 0.97321 0.78404 1.22618 1.00465 0.95404 0.95300 0.90095 1.22847 1.00618 1.00041 0.93773 1.21154 0.98004 0.84756 0.90920 1.44489 1.72321 1.10165 1.06301 1.19070 1.30782 0.86442 0.99253 0.90464 1.24816 1.01252 0.98129 0.96271 1.69982 1.49334 1.33635 1.03892 0.86126 0.77672 0.85061 0.77116 1.21640 1.21820 1.20649 1.21595 0.94679 0.92277 0.89933 1.74639 1.10667 1.17926 1.04139 1.82001 1.20118 0.99132 1.03424 1.50502 1.45420 1.11328 1.07465 1.21983 1.00268 1.01975 0.76244 1.22264 0.94855 1.03669 1.02413 0.91358 0.91077 0.92999 0.86467 0.90485 0.75477 0.91408 0.91081 0.92000 0.92194 0.93430 0.94097 0.93811 0.96349 0.94392 0.87539 0.88083 0.91126 0.91372 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.89 37.16 0.37 -0.66 16 2 C -0.06 -0.49 5.62 -27.89 -0.16 -0.65 16 3 C 0.13 1.32 6.27 -81.88 -0.51 0.80 16 4 C -0.10 -1.37 6.99 -83.55 -0.58 -1.96 16 5 C 0.60 8.78 7.82 -12.47 -0.10 8.69 16 6 O -0.54 -8.51 14.72 5.28 0.08 -8.43 16 7 N -0.71 -10.20 5.50 -61.35 -0.34 -10.54 16 8 C 0.13 1.99 5.13 -4.04 -0.02 1.96 16 9 C -0.12 -2.03 3.05 -88.47 -0.27 -2.30 16 10 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 11 C -0.13 -2.48 6.42 -24.90 -0.16 -2.64 16 12 C 0.18 4.33 5.38 -3.06 -0.02 4.32 16 13 N -0.61 -15.80 3.39 -170.07 -0.58 -16.38 16 14 C -0.23 -6.48 10.26 -15.06 -0.15 -6.64 16 15 H 0.08 2.14 7.84 -52.48 -0.41 1.73 16 16 C -0.01 -0.25 5.48 -17.43 -0.10 -0.34 16 17 N -0.92 -27.52 10.36 55.49 0.57 -26.94 16 18 Si 0.91 22.54 29.56 -169.99 -5.02 17.51 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.14 2.96 6.65 -2.53 -0.02 2.94 16 23 N -0.20 -2.88 12.04 32.85 0.40 -2.49 16 24 N -0.07 -0.88 13.78 60.35 0.83 -0.04 16 25 N -0.36 -3.43 3.63 -56.85 -0.21 -3.63 16 26 C 0.12 0.55 7.02 -4.04 -0.03 0.52 16 27 C -0.17 -0.69 10.24 37.16 0.38 -0.31 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.31 6.16 -51.93 -0.32 -0.01 16 31 H 0.12 1.10 6.44 -51.93 -0.33 0.77 16 32 H 0.08 0.36 7.18 -51.93 -0.37 -0.01 16 33 H 0.41 5.79 8.16 -40.82 -0.33 5.46 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.10 7.96 -51.93 -0.41 0.69 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 38 H 0.05 1.29 7.30 -51.93 -0.38 0.91 16 39 H 0.04 1.11 7.61 -51.93 -0.40 0.71 16 40 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.02 0.40 7.91 -51.93 -0.41 -0.02 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.10 0.23 7.15 -51.93 -0.37 -0.14 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.30 6.16 -51.93 -0.32 -0.02 16 47 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 LS Contribution 380.02 15.07 5.73 5.73 Total: -1.00 -34.16 380.02 -7.32 -41.49 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -7.42 Total: -0.01 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -1.37 Total: 3.73 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: 0.68 Total: -60.02 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.08 Total: -8.43 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.16 -7.32 -41.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028800400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.094 kcal (2) G-P(sol) polarization free energy of solvation -34.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds