Wall clock time and date at job start Fri Apr 10 2020 18:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.46977 * 2 1 4 4 C 1.36600 * 126.58080 * 270.12807 * 3 2 1 5 5 C 1.47526 * 125.77058 * 0.06817 * 4 3 2 6 6 O 1.21592 * 119.99933 * 0.24432 * 5 4 3 7 7 N 1.34779 * 119.99953 * 180.24729 * 5 4 3 8 8 C 1.46499 * 120.00160 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47305 * 180.02562 * 8 7 5 10 10 H 1.08999 * 110.88818 * 51.12081 * 9 8 7 11 11 C 1.55155 * 111.00555 * 175.00166 * 9 8 7 12 12 C 1.54318 * 102.94619 * 153.57536 * 11 9 8 13 13 N 1.47028 * 107.26942 * 337.80748 * 12 11 9 14 14 C 1.36937 * 125.64691 * 178.91636 * 13 12 11 15 15 H 1.08008 * 119.99658 * 174.87407 * 14 13 12 16 16 C 1.38803 * 120.00178 * 354.87417 * 14 13 12 17 17 N 1.31623 * 120.00279 * 7.06356 * 16 14 13 18 18 Si 1.86804 * 120.00172 * 187.05961 * 16 14 13 19 19 H 1.48503 * 109.46839 * 94.98639 * 18 16 14 20 20 H 1.48493 * 109.47343 * 214.98649 * 18 16 14 21 21 H 1.48496 * 109.47026 * 334.98999 * 18 16 14 22 22 C 1.47426 * 108.70453 * 358.94180 * 13 12 11 23 23 N 1.34402 * 108.45715 * 180.25697 * 4 3 2 24 24 N 1.28759 * 109.52398 * 359.77180 * 23 4 3 25 25 N 1.34811 * 126.58028 * 90.00266 * 3 2 1 26 26 C 1.46501 * 126.59488 * 0.02562 * 25 3 2 27 27 C 1.53007 * 109.46976 * 269.71231 * 26 25 3 28 28 H 1.09000 * 109.47948 * 60.00118 * 1 2 3 29 29 H 1.09006 * 109.47214 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47138 * 299.99494 * 1 2 3 31 31 H 1.09005 * 109.47138 * 240.00505 * 2 1 3 32 32 H 1.08996 * 109.47645 * 120.00260 * 2 1 3 33 33 H 0.97000 * 119.99518 * 0.02562 * 7 5 4 34 34 H 1.09006 * 109.47086 * 300.00468 * 8 7 5 35 35 H 1.08998 * 109.46918 * 60.00118 * 8 7 5 36 36 H 1.08999 * 110.72161 * 271.94057 * 11 9 8 37 37 H 1.09004 * 110.72096 * 35.03254 * 11 9 8 38 38 H 1.09000 * 109.88302 * 97.21969 * 12 11 9 39 39 H 1.09002 * 109.88761 * 218.39002 * 12 11 9 40 40 H 0.97000 * 120.00093 * 180.02562 * 17 16 14 41 41 H 1.08998 * 110.36180 * 265.29142 * 22 13 12 42 42 H 1.08997 * 110.36852 * 142.96357 * 22 13 12 43 43 H 1.09000 * 109.46969 * 149.71408 * 26 25 3 44 44 H 1.08998 * 109.46894 * 29.71187 * 26 25 3 45 45 H 1.08998 * 109.46824 * 300.00013 * 27 26 25 46 46 H 1.09000 * 109.46673 * 59.99993 * 27 26 25 47 47 H 1.09005 * 109.46627 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3013 2.1892 -1.0969 5 6 2.1479 1.7690 -2.5027 6 8 1.7460 0.6513 -2.7628 7 7 2.4533 2.6241 -3.4988 8 6 2.3016 2.2067 -4.8948 9 6 2.7131 3.3551 -5.8181 10 1 3.6947 3.7416 -5.5440 11 6 2.6857 2.9109 -7.3045 12 6 2.4373 4.2353 -8.0566 13 7 1.8192 5.1691 -7.1038 14 6 1.4607 6.4630 -7.3730 15 1 0.9365 7.0440 -6.6286 16 6 1.7710 7.0277 -8.6024 17 7 2.2836 6.2824 -9.5585 18 14 1.4610 8.8457 -8.9001 19 1 2.7058 9.6102 -8.6331 20 1 1.0460 9.0526 -10.3107 21 1 0.3850 9.3193 -7.9929 22 6 1.6500 4.4818 -5.8106 23 7 2.7333 3.3912 -0.6789 24 7 2.7453 3.4204 0.6083 25 7 2.3001 2.1783 1.0826 26 6 2.1593 1.7783 2.4849 27 6 0.7524 2.1259 2.9756 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.7744 3.5155 -3.2912 34 1 2.9364 1.3415 -5.0865 35 1 1.2611 1.9428 -5.0841 36 1 3.6421 2.4760 -7.5948 37 1 1.8735 2.2057 -7.4813 38 1 3.3835 4.6420 -8.4134 39 1 1.7647 4.0639 -8.8971 40 1 2.5007 6.6772 -10.4175 41 1 0.6486 4.0580 -5.7345 42 1 1.8344 5.1719 -4.9873 43 1 2.8960 2.3074 3.0893 44 1 2.3201 0.7039 2.5741 45 1 0.5916 3.2003 2.8863 46 1 0.0157 1.5967 2.3710 47 1 0.6475 1.8279 4.0188 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028800400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:49 Heat of formation + Delta-G solvation = 46.627371 kcal Electronic energy + Delta-G solvation = -27049.817003 eV Core-core repulsion = 23269.048648 eV Total energy + Delta-G solvation = -3780.768355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.36455 -40.54999 -39.19434 -36.85669 -36.02762 -34.72423 -34.29787 -31.89599 -31.46168 -30.89828 -29.73350 -27.35969 -25.91478 -25.32742 -24.81762 -23.90432 -22.08362 -21.53693 -21.29025 -21.02248 -19.13873 -18.65171 -17.52233 -17.32024 -16.81516 -16.71247 -16.41506 -15.86052 -15.75066 -15.69518 -15.46367 -14.82817 -14.66320 -14.60195 -14.02381 -13.89174 -13.81214 -13.76550 -13.41304 -13.40580 -13.14601 -13.01903 -12.76728 -12.74594 -12.64120 -12.32212 -12.01277 -11.99639 -11.95897 -11.86615 -11.79625 -11.54633 -11.45223 -11.22798 -11.04917 -10.68275 -10.33391 -9.97061 -8.88869 -7.86245 -5.20322 0.10464 0.59760 1.08413 1.45011 1.47233 1.56052 2.14084 2.22786 2.49404 3.13681 3.31355 3.38677 3.51837 3.61960 3.70522 3.85116 3.95632 4.03028 4.05422 4.11673 4.24012 4.30410 4.43678 4.46192 4.51109 4.63606 4.65359 4.73308 4.76798 4.82998 4.87594 4.93309 4.98325 5.06080 5.10267 5.11439 5.21527 5.32851 5.39520 5.45434 5.47712 5.54010 5.69375 5.78912 6.20793 6.41666 6.88886 7.10926 7.12990 7.78305 8.43168 9.24790 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.020089 B = 0.002488 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.469708 B =11252.075471 C =12119.939974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.061 4.061 3 C 0.137 3.863 4 C -0.131 4.131 5 C 0.603 3.397 6 O -0.556 6.556 7 N -0.709 5.709 8 C 0.146 3.854 9 C -0.097 4.097 10 H 0.085 0.915 11 C -0.119 4.119 12 C 0.181 3.819 13 N -0.629 5.629 14 C -0.244 4.244 15 H 0.079 0.921 16 C -0.066 4.066 17 N -0.949 5.949 18 Si 0.977 3.023 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.269 1.269 22 C 0.138 3.862 23 N -0.228 5.228 24 N -0.092 5.092 25 N -0.347 5.347 26 C 0.102 3.898 27 C -0.170 4.170 28 H 0.036 0.964 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.410 0.590 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.014 0.986 39 H 0.004 0.996 40 H 0.247 0.753 41 H 0.020 0.980 42 H 0.040 0.960 43 H 0.118 0.882 44 H 0.136 0.864 45 H 0.048 0.952 46 H 0.065 0.935 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.575 -17.078 27.898 32.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.100 4.100 3 C -0.003 4.003 4 C -0.271 4.271 5 C 0.388 3.612 6 O -0.434 6.434 7 N -0.359 5.359 8 C 0.023 3.977 9 C -0.117 4.117 10 H 0.103 0.897 11 C -0.158 4.158 12 C 0.056 3.944 13 N -0.356 5.356 14 C -0.373 4.373 15 H 0.097 0.903 16 C -0.259 4.259 17 N -0.598 5.598 18 Si 0.805 3.195 19 H -0.213 1.213 20 H -0.220 1.220 21 H -0.194 1.194 22 C 0.012 3.988 23 N -0.100 5.100 24 N -0.071 5.071 25 N -0.133 5.133 26 C -0.016 4.016 27 C -0.228 4.228 28 H 0.056 0.944 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.135 0.865 33 H 0.246 0.754 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.032 0.968 39 H 0.023 0.977 40 H 0.056 0.944 41 H 0.038 0.962 42 H 0.058 0.942 43 H 0.136 0.864 44 H 0.154 0.846 45 H 0.067 0.933 46 H 0.084 0.916 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.352 -16.299 27.992 32.393 hybrid contribution -0.273 1.074 -0.924 1.443 sum -0.625 -15.225 27.067 31.062 Atomic orbital electron populations 1.21721 0.92544 1.03891 1.01696 1.20599 0.97588 0.85425 1.06425 1.22342 0.95128 0.97020 0.85791 1.21312 1.17079 0.92983 0.95703 1.16850 0.77043 0.84301 0.82969 1.90732 1.48206 1.20471 1.84021 1.45854 1.66377 1.17674 1.06044 1.21261 1.01815 0.96433 0.78197 1.22419 0.99351 0.94780 0.95126 0.89686 1.22708 1.02626 0.96967 0.93503 1.20951 0.95250 0.87384 0.90778 1.44819 1.72201 1.10048 1.08495 1.19446 1.30591 0.87881 0.99384 0.90288 1.25667 1.01673 1.02383 0.96174 1.70199 1.50487 1.35145 1.04007 0.85075 0.77746 0.79842 0.76789 1.21329 1.22000 1.19356 1.21753 0.95941 0.93225 0.87836 1.74601 1.11693 1.18794 1.04956 1.81891 1.21164 1.01060 1.03023 1.50839 1.43531 1.09962 1.08942 1.22555 1.01114 1.04250 0.73708 1.22262 0.94139 1.02247 1.04133 0.94439 0.89182 0.91538 0.88053 0.86488 0.75406 0.89793 0.91447 0.89420 0.90558 0.96800 0.97741 0.94354 0.96234 0.94203 0.86381 0.84611 0.93272 0.91621 0.86793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.89 71.98 0.71 -0.98 16 2 C -0.06 -0.78 5.62 29.85 0.17 -0.61 16 3 C 0.14 2.65 6.27 41.72 0.26 2.91 16 4 C -0.13 -3.45 6.99 40.82 0.29 -3.16 16 5 C 0.60 17.28 7.82 86.69 0.68 17.96 16 6 O -0.56 -17.00 14.72 -4.01 -0.06 -17.06 16 7 N -0.71 -19.98 5.50 -466.28 -2.56 -22.54 16 8 C 0.15 4.13 5.13 86.38 0.44 4.57 16 9 C -0.10 -3.24 3.05 -9.40 -0.03 -3.27 16 10 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 11 C -0.12 -4.30 6.42 31.78 0.20 -4.10 16 12 C 0.18 9.17 5.38 86.73 0.47 9.63 16 13 N -0.63 -33.51 3.39 -691.97 -2.35 -35.85 16 14 C -0.24 -14.22 10.26 84.03 0.86 -13.35 16 15 H 0.08 4.44 7.84 -2.91 -0.02 4.41 16 16 C -0.07 -3.88 5.48 84.86 0.46 -3.41 16 17 N -0.95 -58.65 10.36 21.65 0.22 -58.43 16 18 Si 0.98 47.16 29.56 68.60 2.03 49.19 16 19 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 20 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 22 C 0.14 5.76 6.65 86.86 0.58 6.34 16 23 N -0.23 -6.57 12.04 -49.99 -0.60 -7.17 16 24 N -0.09 -2.35 13.78 37.02 0.51 -1.84 16 25 N -0.35 -5.93 3.63 -333.76 -1.21 -7.14 16 26 C 0.10 0.63 7.02 86.38 0.61 1.24 16 27 C -0.17 -0.87 10.24 71.98 0.74 -0.13 16 28 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.07 0.60 6.16 -2.38 -0.01 0.58 16 31 H 0.10 1.71 6.44 -2.38 -0.02 1.70 16 32 H 0.12 0.56 7.18 -2.39 -0.02 0.54 16 33 H 0.41 11.52 8.16 -92.71 -0.76 10.77 16 34 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 35 H 0.07 1.99 7.96 -2.39 -0.02 1.97 16 36 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.08 2.52 8.04 -2.39 -0.02 2.50 16 38 H 0.01 0.78 7.30 -2.39 -0.02 0.76 16 39 H 0.00 0.25 7.61 -2.39 -0.02 0.23 16 40 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 41 H 0.02 0.83 7.91 -2.39 -0.02 0.81 16 42 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.14 -0.05 7.15 -2.39 -0.02 -0.07 16 45 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.06 0.39 6.16 -2.39 -0.01 0.37 16 47 H 0.11 -0.05 8.14 -2.38 -0.02 -0.07 16 Total: -1.00 -77.61 380.02 2.64 -74.97 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.22 Total: 12.25 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 6.44 Total: 13.63 kcal Atomic # 7 Polarization: -126.98 SS G_CDS: -5.99 Total: -132.97 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.06 Total: -17.06 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -77.61 2.64 -74.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028800400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.598 kcal (2) G-P(sol) polarization free energy of solvation -77.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds