Wall clock time and date at job start Fri Apr 10 2020 18:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 110.99539 * 2 1 4 4 C 1.46894 * 111.00367 * 123.95357 * 2 1 3 5 5 C 1.52997 * 109.47240 * 170.00288 * 4 2 1 6 6 N 1.46502 * 109.47291 * 180.02562 * 5 4 2 7 7 C 1.35034 * 124.88343 * 125.00047 * 6 5 4 8 8 C 1.35363 * 107.22721 * 179.71656 * 7 6 5 9 9 C 1.41505 * 105.50483 * 0.26219 * 8 7 6 10 10 C 1.47710 * 126.52038 * 179.97438 * 9 8 7 11 11 O 1.21573 * 119.99793 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00005 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99754 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47017 * 180.02562 * 13 12 10 15 15 C 1.53954 * 113.73883 * 273.74041 * 14 13 12 16 16 N 1.47816 * 86.03324 * 222.08401 * 15 14 13 17 17 C 1.36935 * 134.45341 * 204.64085 * 16 15 14 18 18 H 1.07997 * 120.00020 * 173.34737 * 17 16 15 19 19 C 1.38813 * 119.99999 * 353.35226 * 17 16 15 20 20 N 1.31624 * 120.00278 * 5.06344 * 19 17 16 21 21 Si 1.86799 * 120.00084 * 185.05765 * 19 17 16 22 22 H 1.48503 * 109.46824 * 94.98632 * 21 19 17 23 23 H 1.48493 * 109.47531 * 214.98785 * 21 19 17 24 24 H 1.48502 * 109.47136 * 334.99311 * 21 19 17 25 25 C 1.47579 * 91.05187 * 24.54838 * 16 15 14 26 26 N 1.28468 * 124.88304 * 305.19343 * 6 5 4 27 27 H 1.09001 * 109.47283 * 296.03856 * 1 2 3 28 28 H 1.08997 * 109.47703 * 56.04733 * 1 2 3 29 29 H 1.09006 * 109.46504 * 176.04376 * 1 2 3 30 30 H 1.08996 * 109.47349 * 183.95331 * 3 2 1 31 31 H 1.08998 * 109.47487 * 303.95177 * 3 2 1 32 32 H 1.09005 * 109.47217 * 63.95672 * 3 2 1 33 33 H 1.09005 * 109.47065 * 50.00503 * 4 2 1 34 34 H 1.09004 * 109.47465 * 290.00549 * 4 2 1 35 35 H 1.09000 * 109.47265 * 60.00448 * 5 4 2 36 36 H 1.09004 * 109.47368 * 299.99999 * 5 4 2 37 37 H 1.07994 * 126.38656 * 359.97087 * 7 6 5 38 38 H 1.08004 * 127.25282 * 180.27939 * 8 7 6 39 39 H 0.96991 * 119.99737 * 0.02562 * 12 10 9 40 40 H 1.08999 * 109.47364 * 299.99902 * 13 12 10 41 41 H 1.09002 * 109.47497 * 60.00307 * 13 12 10 42 42 H 1.08998 * 112.94414 * 45.32690 * 14 13 12 43 43 H 1.09003 * 113.76883 * 336.34724 * 15 14 13 44 44 H 1.08992 * 113.76562 * 107.74806 * 15 14 13 45 45 H 0.97000 * 119.99884 * 179.97438 * 20 19 17 46 46 H 1.08995 * 113.76658 * 221.14624 * 25 16 15 47 47 H 1.09007 * 113.76717 * 89.75220 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 3.5045 -0.9552 0.9703 6 7 4.0295 -1.7196 2.1044 7 6 4.7433 -2.8612 2.0021 8 6 5.0490 -3.2571 3.2599 9 6 4.4699 -2.2877 4.1128 10 6 4.5227 -2.2716 5.5888 11 8 5.1088 -3.1537 6.1858 12 7 3.9220 -1.2784 6.2738 13 6 3.9748 -1.2622 7.7378 14 6 3.2202 -0.0386 8.2618 15 6 4.0813 1.2354 8.3366 16 7 3.4293 1.4758 9.6413 17 6 3.1821 2.5893 10.3991 18 1 2.5799 2.5118 11.2922 19 6 3.7055 3.8176 10.0192 20 7 4.3548 3.9325 8.8801 21 14 3.4883 5.3076 11.1248 22 1 4.6869 5.4625 11.9877 23 1 3.3194 6.5235 10.2893 24 1 2.2861 5.1211 11.9763 25 6 3.1499 0.0352 9.7978 26 7 3.8740 -1.4020 3.3395 27 1 -0.3634 0.4511 0.9234 28 1 -0.3634 0.5739 -0.8524 29 1 -0.3632 -1.0253 -0.0709 30 1 3.0826 1.3434 -0.0708 31 1 1.5897 1.9164 -0.8524 32 1 1.7043 1.8724 0.9234 33 1 1.5091 -1.7407 1.1755 34 1 1.7975 -0.2248 2.0628 35 1 3.9909 0.0195 0.9323 36 1 3.7025 -1.4964 0.0450 37 1 5.0223 -3.3626 1.0871 38 1 5.6158 -4.1290 3.5514 39 1 3.4547 -0.5744 5.7975 40 1 3.5121 -2.1686 8.1281 41 1 5.0140 -1.2155 8.0634 42 1 2.2585 0.1099 7.7708 43 1 5.1510 1.0390 8.4096 44 1 3.8345 1.9775 7.5775 45 1 4.7202 4.7909 8.6145 46 1 2.1611 -0.1789 10.2032 47 1 3.9455 -0.5144 10.3010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031677445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:02 Heat of formation + Delta-G solvation = 110.443078 kcal Electronic energy + Delta-G solvation = -26416.376834 eV Core-core repulsion = 22638.375736 eV Total energy + Delta-G solvation = -3778.001098 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.78679 -39.27643 -38.13890 -37.82233 -34.31450 -33.89193 -32.15558 -30.89904 -29.75282 -28.63976 -28.04599 -26.22038 -25.05021 -24.73153 -23.05400 -21.83292 -21.61423 -21.29036 -19.97247 -18.95941 -17.92008 -16.92199 -16.64778 -16.39823 -15.87833 -15.71858 -15.42651 -15.05245 -14.85938 -14.63246 -14.18285 -14.14030 -13.79717 -13.51447 -13.33161 -13.07432 -12.89008 -12.75756 -12.44182 -12.29956 -12.20128 -12.03241 -11.60209 -11.39046 -11.29343 -10.99286 -10.95478 -10.71299 -10.53244 -10.09832 -9.77300 -9.70530 -9.41103 -9.39130 -9.19925 -8.92814 -8.77341 -8.69775 -6.83820 -5.76117 -3.07120 1.55256 2.04238 2.15861 3.37239 3.40248 3.45350 3.47167 3.53429 3.56573 4.10762 4.28164 4.47527 4.60025 4.60321 4.71736 4.77206 4.96288 5.04056 5.07424 5.18156 5.24607 5.26249 5.37743 5.38970 5.42275 5.44674 5.50150 5.54977 5.65286 5.71044 5.89767 6.09819 6.25415 6.31489 6.38074 6.40781 6.42063 6.60138 6.62543 6.70424 6.81330 7.25721 7.38487 7.58661 7.62206 7.90497 7.99808 8.41597 9.06497 9.72746 10.63394 11.41635 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.010486 B = 0.002754 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.503026 B =10164.560307 C =12123.876076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.546 5.546 3 C 0.014 3.986 4 C 0.040 3.960 5 C 0.125 3.875 6 N -0.283 5.283 7 C -0.019 4.019 8 C -0.180 4.180 9 C -0.011 4.011 10 C 0.600 3.400 11 O -0.540 6.540 12 N -0.708 5.708 13 C 0.130 3.870 14 C -0.154 4.154 15 C 0.172 3.828 16 N -0.613 5.613 17 C -0.223 4.223 18 H 0.080 0.920 19 C -0.008 4.008 20 N -0.919 5.919 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.128 3.872 26 N -0.259 5.259 27 H 0.031 0.969 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.034 0.966 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.181 0.819 38 H 0.162 0.838 39 H 0.407 0.593 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.030 0.970 44 H 0.067 0.933 45 H 0.253 0.747 46 H 0.045 0.955 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.266 -12.059 -22.283 25.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.270 5.270 3 C -0.134 4.134 4 C -0.089 4.089 5 C 0.004 3.996 6 N -0.072 5.072 7 C -0.161 4.161 8 C -0.208 4.208 9 C -0.172 4.172 10 C 0.384 3.616 11 O -0.416 6.416 12 N -0.358 5.358 13 C 0.006 3.994 14 C -0.174 4.174 15 C 0.047 3.953 16 N -0.340 5.340 17 C -0.351 4.351 18 H 0.098 0.902 19 C -0.205 4.205 20 N -0.566 5.566 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.002 3.998 26 N -0.095 5.095 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.129 0.871 37 H 0.198 0.802 38 H 0.180 0.820 39 H 0.242 0.758 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.047 0.953 44 H 0.085 0.915 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.360 -11.497 -22.237 25.410 hybrid contribution 0.050 0.923 0.973 1.343 sum -4.310 -10.574 -21.264 24.136 Atomic orbital electron populations 1.22394 0.86298 1.02569 1.01120 1.61945 1.08734 1.14340 1.41979 1.22540 1.00962 0.88497 1.01397 1.22350 0.93356 0.99863 0.93308 1.21970 0.95030 0.97392 0.85230 1.45467 1.38290 1.18598 1.04803 1.22858 1.01789 0.90966 1.00511 1.21782 1.05926 1.02382 0.90680 1.22049 1.04384 0.96227 0.94545 1.16904 0.78857 0.81973 0.83895 1.90778 1.44011 1.37764 1.69047 1.45917 1.54938 1.26867 1.08098 1.21497 1.01240 0.98732 0.77930 1.23814 1.00350 0.95358 0.97834 1.22287 0.93490 0.90582 0.88966 1.45973 1.67089 0.99997 1.20895 1.19035 1.26150 0.84869 1.05015 0.90226 1.24822 1.00143 0.97720 0.97773 1.69840 1.41506 1.24019 1.21266 0.86137 0.77662 0.82459 0.79765 1.21633 1.21746 1.20566 1.22493 0.98146 0.87117 0.92052 1.73514 1.21170 1.24752 0.90023 0.95024 0.90899 0.91175 0.91063 0.90915 0.94706 0.89967 0.92378 0.88728 0.87063 0.80154 0.82042 0.75785 0.91742 0.91170 0.89266 0.95255 0.91453 0.93696 0.93707 0.94572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.57 60.06 0.57 0.72 16 2 N -0.55 -3.70 5.02 -251.26 -1.26 -4.96 16 3 C 0.01 0.09 9.32 60.07 0.56 0.65 16 4 C 0.04 0.29 5.06 -3.83 -0.02 0.28 16 5 C 0.12 0.83 6.32 -4.04 -0.03 0.80 16 6 N -0.28 -2.76 3.41 -61.33 -0.21 -2.97 16 7 C -0.02 -0.17 11.40 -17.17 -0.20 -0.36 16 8 C -0.18 -2.09 10.81 -39.36 -0.43 -2.51 16 9 C -0.01 -0.16 7.13 -82.76 -0.59 -0.75 16 10 C 0.60 9.89 7.82 -12.39 -0.10 9.79 16 11 O -0.54 -10.32 16.93 5.30 0.09 -10.23 16 12 N -0.71 -11.13 5.55 -61.29 -0.34 -11.47 16 13 C 0.13 2.15 5.51 -4.04 -0.02 2.13 16 14 C -0.15 -2.86 3.93 -89.69 -0.35 -3.21 16 15 C 0.17 4.08 6.99 -2.83 -0.02 4.06 16 16 N -0.61 -16.02 3.70 -177.69 -0.66 -16.68 16 17 C -0.22 -6.37 10.70 -15.06 -0.16 -6.53 16 18 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.92 -27.61 11.51 55.49 0.64 -26.98 16 21 Si 0.91 22.39 29.56 -169.99 -5.02 17.36 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.13 2.65 8.51 -2.97 -0.03 2.63 16 26 N -0.26 -3.33 11.35 33.42 0.38 -2.95 16 27 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 29 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 30 H 0.07 0.39 6.47 -51.93 -0.34 0.05 16 31 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 32 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.61 8.06 -51.93 -0.42 0.19 16 34 H 0.06 0.54 8.06 -51.93 -0.42 0.12 16 35 H 0.09 0.61 6.55 -51.93 -0.34 0.27 16 36 H 0.11 0.48 8.04 -51.93 -0.42 0.06 16 37 H 0.18 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.16 1.70 8.06 -52.48 -0.42 1.28 16 39 H 0.41 6.03 8.20 -40.82 -0.33 5.70 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.07 1.25 7.88 -51.93 -0.41 0.84 16 42 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 43 H 0.03 0.73 7.92 -51.93 -0.41 0.32 16 44 H 0.07 1.74 7.37 -51.93 -0.38 1.36 16 45 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.04 0.72 8.10 -51.92 -0.42 0.30 16 LS Contribution 390.90 15.07 5.89 5.89 Total: -1.00 -34.96 390.90 -9.05 -44.00 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -7.66 Total: 1.63 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -0.90 Total: 7.35 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: -1.45 Total: -66.00 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.96 -9.05 -44.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031677445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.448 kcal (2) G-P(sol) polarization free energy of solvation -34.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds