Wall clock time and date at job start Fri Apr 10 2020 18:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.47077 * 2 1 4 4 N 1.28520 * 124.44168 * 89.97017 * 3 2 1 5 5 C 1.31132 * 109.05410 * 180.02562 * 4 3 2 6 6 C 1.50710 * 127.11066 * 179.97438 * 5 4 3 7 7 C 1.40922 * 105.78062 * 0.02562 * 5 4 3 8 8 C 1.47795 * 127.23788 * 179.97438 * 7 5 4 9 9 O 1.21557 * 120.00070 * 359.97438 * 8 7 5 10 10 N 1.34782 * 120.00081 * 180.02562 * 8 7 5 11 11 C 1.46498 * 120.00273 * 180.02562 * 10 8 7 12 12 H 1.09002 * 108.45915 * 327.28493 * 11 10 8 13 13 C 1.52529 * 108.52218 * 209.71568 * 11 10 8 14 14 C 1.50129 * 105.41051 * 149.34810 * 13 11 10 15 15 C 1.54845 * 110.81239 * 97.68647 * 14 13 11 16 16 C 1.54404 * 110.07185 * 321.06806 * 15 14 13 17 17 N 1.43438 * 116.39197 * 318.65940 * 16 15 14 18 18 C 1.36942 * 120.53259 * 271.73037 * 17 16 15 19 19 H 1.07993 * 120.00248 * 145.95316 * 18 17 16 20 20 C 1.38815 * 119.99731 * 325.95009 * 18 17 16 21 21 N 1.31619 * 119.99985 * 331.48462 * 20 18 17 22 22 Si 1.86802 * 119.99967 * 151.49478 * 20 18 17 23 23 H 1.48494 * 109.47025 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47111 * 59.99337 * 22 20 18 25 25 H 1.48503 * 109.46840 * 299.99534 * 22 20 18 26 26 C 1.46242 * 108.52389 * 84.99272 * 11 10 8 27 27 N 1.28589 * 124.44292 * 270.28724 * 3 2 1 28 28 H 1.08998 * 109.46747 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46791 * 300.00247 * 1 2 3 30 30 H 1.09001 * 109.47196 * 59.99759 * 1 2 3 31 31 H 1.08995 * 109.46961 * 239.99889 * 2 1 3 32 32 H 1.09000 * 109.46671 * 119.99689 * 2 1 3 33 33 H 1.08997 * 109.46583 * 270.02732 * 6 5 4 34 34 H 1.09000 * 109.46609 * 30.02481 * 6 5 4 35 35 H 1.08993 * 109.47057 * 150.02521 * 6 5 4 36 36 H 0.97000 * 119.99849 * 359.97438 * 10 8 7 37 37 H 1.09000 * 110.24942 * 268.32143 * 13 11 10 38 38 H 1.08992 * 110.24952 * 30.38003 * 13 11 10 39 39 H 1.09000 * 109.20528 * 218.02416 * 14 13 11 40 40 H 1.08999 * 109.21068 * 337.38933 * 14 13 11 41 41 H 1.09000 * 109.36070 * 81.33521 * 15 14 13 42 42 H 1.09005 * 109.36064 * 200.92499 * 15 14 13 43 43 H 1.09000 * 107.89623 * 196.93759 * 16 15 14 44 44 H 1.08999 * 108.10004 * 80.53915 * 16 15 14 45 45 H 0.97000 * 120.00340 * 354.23494 * 21 20 18 46 46 H 1.09003 * 109.83779 * 60.14686 * 26 11 10 47 47 H 1.08996 * 109.84825 * 299.16090 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2602 2.0667 1.0599 5 6 2.6812 3.2589 0.7119 6 6 3.0786 4.3865 1.6295 7 6 2.6842 3.2681 -0.6972 8 6 3.0776 4.3835 -1.5835 9 8 3.4490 5.4376 -1.1055 10 7 3.0234 4.2323 -2.9217 11 6 3.4138 5.3377 -3.8002 12 1 3.1532 6.2761 -3.3108 13 6 2.6155 5.2323 -5.0956 14 6 2.4440 6.6447 -5.5746 15 6 3.5039 6.9941 -6.6481 16 6 4.8636 6.3651 -6.2747 17 7 5.2385 6.4312 -4.8918 18 6 5.9215 7.5147 -4.4071 19 1 5.7442 7.8579 -3.3986 20 6 6.8419 8.1718 -5.2122 21 7 7.4783 7.5128 -6.1572 22 14 7.1774 9.9912 -4.9541 23 1 8.1935 10.4511 -5.9345 24 1 7.6852 10.2103 -3.5760 25 1 5.9205 10.7584 -5.1463 26 6 4.8642 5.2962 -3.9826 27 7 2.2558 2.0687 -1.0604 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.2052 5.0001 1.8502 34 1 3.4785 3.9765 2.5568 35 1 3.8394 4.9983 1.1448 36 1 2.7267 3.3912 -3.3031 37 1 3.1673 4.6484 -5.8323 38 1 1.6434 4.7784 -4.9038 39 1 1.4483 6.7597 -6.0030 40 1 2.5520 7.3254 -4.7302 41 1 3.1794 6.6094 -7.6149 42 1 3.6119 8.0771 -6.7102 43 1 5.6357 6.8644 -6.8601 44 1 4.8446 5.3165 -6.5717 45 1 7.3677 6.5524 -6.2376 46 1 5.1531 4.3481 -4.4363 47 1 5.3618 5.4136 -3.0200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034551012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:19 Heat of formation + Delta-G solvation = 92.839993 kcal Electronic energy + Delta-G solvation = -27939.722557 eV Core-core repulsion = 24160.958132 eV Total energy + Delta-G solvation = -3778.764425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.78346 -39.75567 -37.78968 -35.36825 -34.71104 -33.43926 -32.93340 -31.65123 -30.89008 -29.82062 -28.10706 -26.14342 -25.24003 -24.43425 -23.21768 -22.43219 -21.19672 -20.45899 -20.22171 -19.02603 -17.84859 -17.20559 -17.06101 -16.65079 -15.95309 -15.00492 -14.88876 -14.48223 -14.19292 -14.12121 -14.00557 -13.60627 -13.55904 -13.31759 -13.05938 -12.91576 -12.70531 -12.55136 -12.49868 -12.27734 -11.91641 -11.70167 -11.55490 -11.12558 -11.09303 -10.69505 -10.63270 -10.41518 -10.33185 -10.16878 -10.05711 -9.94404 -9.84493 -9.66848 -9.33526 -9.20608 -8.84252 -8.26503 -6.77783 -5.95444 -3.28164 1.25227 1.82933 1.92321 3.24572 3.40044 3.55989 3.58433 3.75907 3.77071 4.34245 4.38914 4.61514 4.61952 4.67548 4.87470 5.05989 5.16235 5.16752 5.27242 5.37788 5.43508 5.51355 5.52575 5.61824 5.62602 5.67469 5.85992 6.01067 6.02067 6.08131 6.20028 6.25938 6.28597 6.40347 6.49750 6.59547 6.66871 6.74333 6.83167 6.89715 6.97421 7.13519 7.39630 7.67962 8.03900 8.16028 8.38314 8.66506 9.16888 9.89380 10.33895 11.20696 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.018992 B = 0.003144 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.929164 B = 8902.600519 C = 9733.955314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.135 3.865 3 N -0.145 5.145 4 N -0.295 5.295 5 C 0.061 3.939 6 C -0.069 4.069 7 C -0.041 4.041 8 C 0.602 3.398 9 O -0.519 6.519 10 N -0.713 5.713 11 C 0.134 3.866 12 H 0.090 0.910 13 C -0.118 4.118 14 C -0.107 4.107 15 C -0.139 4.139 16 C 0.137 3.863 17 N -0.580 5.580 18 C -0.346 4.346 19 H 0.053 0.947 20 C -0.020 4.020 21 N -0.903 5.903 22 Si 1.060 2.940 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.293 1.293 26 C 0.127 3.873 27 N -0.252 5.252 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.399 0.601 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.043 0.957 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.018 0.982 45 H 0.269 0.731 46 H 0.027 0.973 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.640 -15.200 9.712 23.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 N -0.047 5.047 4 N -0.136 5.136 5 C -0.103 4.103 6 C -0.128 4.128 7 C -0.205 4.205 8 C 0.385 3.615 9 O -0.392 6.392 10 N -0.364 5.364 11 C 0.030 3.970 12 H 0.108 0.892 13 C -0.155 4.155 14 C -0.145 4.145 15 C -0.179 4.179 16 C 0.009 3.991 17 N -0.302 5.302 18 C -0.475 4.475 19 H 0.071 0.929 20 C -0.222 4.222 21 N -0.542 5.542 22 Si 0.889 3.111 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.220 1.220 26 C 0.002 3.998 27 N -0.100 5.100 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.233 0.767 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.036 0.964 45 H 0.079 0.921 46 H 0.045 0.955 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.928 -14.381 9.454 22.140 hybrid contribution -0.898 -1.146 0.453 1.525 sum -14.826 -15.528 9.907 23.645 Atomic orbital electron populations 1.22195 0.92975 1.03970 1.03817 1.22061 0.96136 0.74218 1.06044 1.48078 1.44155 1.13246 0.99237 1.73923 1.19031 1.05386 1.15299 1.23302 1.00408 0.93773 0.92797 1.20250 1.02991 0.92777 0.96774 1.23119 1.09063 0.93755 0.94527 1.16652 0.78078 0.84911 0.81896 1.90829 1.46898 1.26426 1.75088 1.46347 1.66834 1.18039 1.05227 1.21019 0.97333 0.89429 0.89205 0.89217 1.21294 0.98836 0.98806 0.96609 1.21311 0.97674 0.95533 0.99944 1.22723 0.97709 1.01328 0.96155 1.20419 0.94693 0.96650 0.87326 1.43801 1.63076 1.18166 1.05124 1.19891 1.19359 1.06366 1.01907 0.92936 1.25847 0.92539 1.06005 0.97857 1.70772 1.36642 1.10152 1.36615 0.83602 0.76001 0.75801 0.75649 1.21211 1.21857 1.21976 1.20710 0.91875 0.91171 0.96037 1.74310 1.15266 1.04498 1.15916 0.89460 0.91361 0.91289 0.87133 0.87166 0.90130 0.90781 0.88316 0.76681 0.90946 0.92131 0.93791 0.91582 0.93511 0.92633 0.90888 0.96406 0.92050 0.95495 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.24 37.16 0.38 -0.49 16 2 C 0.13 0.84 7.24 -4.04 -0.03 0.81 16 3 N -0.14 -1.65 3.94 -10.61 -0.04 -1.69 16 4 N -0.30 -3.81 12.01 33.93 0.41 -3.40 16 5 C 0.06 0.85 7.39 -81.87 -0.61 0.25 16 6 C -0.07 -0.82 10.00 36.01 0.36 -0.46 16 7 C -0.04 -0.62 7.21 -82.68 -0.60 -1.22 16 8 C 0.60 10.25 7.74 -12.35 -0.10 10.16 16 9 O -0.52 -10.38 14.74 5.32 0.08 -10.31 16 10 N -0.71 -11.22 4.87 -58.18 -0.28 -11.50 16 11 C 0.13 2.45 2.01 -71.38 -0.14 2.31 16 12 H 0.09 1.90 6.22 -51.93 -0.32 1.58 16 13 C -0.12 -1.88 5.25 -28.40 -0.15 -2.03 16 14 C -0.11 -1.86 5.65 -27.19 -0.15 -2.02 16 15 C -0.14 -2.72 6.40 -25.02 -0.16 -2.88 16 16 C 0.14 3.16 4.45 -4.93 -0.02 3.14 16 17 N -0.58 -14.44 2.37 -175.40 -0.41 -14.85 16 18 C -0.35 -9.78 9.43 -15.06 -0.14 -9.92 16 19 H 0.05 1.55 7.97 -52.49 -0.42 1.13 16 20 C -0.02 -0.56 4.82 -17.43 -0.08 -0.64 16 21 N -0.90 -26.95 12.19 55.49 0.68 -26.27 16 22 Si 1.06 25.69 30.00 -169.99 -5.10 20.59 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 C 0.13 2.76 5.54 -5.21 -0.03 2.73 16 27 N -0.25 -3.33 11.84 33.42 0.40 -2.93 16 28 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 1.33 6.77 -51.93 -0.35 0.98 16 36 H 0.40 5.34 8.38 -40.82 -0.34 4.99 16 37 H 0.07 1.17 6.28 -51.93 -0.33 0.84 16 38 H 0.06 0.83 8.04 -51.93 -0.42 0.41 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 1.30 6.82 -51.93 -0.35 0.94 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.07 1.93 5.13 -51.93 -0.27 1.67 16 44 H 0.02 0.38 6.89 -51.93 -0.36 0.02 16 45 H 0.27 8.09 7.23 -40.82 -0.30 7.80 16 46 H 0.03 0.56 8.13 -51.93 -0.42 0.14 16 47 H 0.07 1.58 7.93 -51.93 -0.41 1.17 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -33.32 373.86 -7.43 -40.75 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -7.31 Total: 4.25 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -1.47 Total: -0.26 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: 0.74 Total: -60.64 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.10 Total: 20.59 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.32 -7.43 -40.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034551012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.586 kcal (2) G-P(sol) polarization free energy of solvation -33.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds