Wall clock time and date at job start Fri Apr 10 2020 18:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.46535 * 2 1 4 4 N 1.28522 * 124.44239 * 270.30715 * 3 2 1 5 5 C 1.31130 * 109.05608 * 180.18584 * 4 3 2 6 6 C 1.50703 * 127.11309 * 179.83635 * 5 4 3 7 7 C 1.40923 * 105.77746 * 359.56751 * 5 4 3 8 8 C 1.47799 * 127.23765 * 180.26492 * 7 5 4 9 9 O 1.21562 * 120.00302 * 0.02562 * 8 7 5 10 10 N 1.34782 * 120.00224 * 180.02562 * 8 7 5 11 11 C 1.46501 * 120.00320 * 179.97438 * 10 8 7 12 12 H 1.08992 * 109.32402 * 34.99487 * 11 10 8 13 13 C 1.47087 * 109.32966 * 154.65510 * 11 10 8 14 14 C 1.52567 * 114.32462 * 183.06298 * 13 11 10 15 15 C 1.50876 * 109.35261 * 274.97601 * 14 13 11 16 16 C 1.53951 * 110.09590 * 91.89237 * 15 14 13 17 17 N 1.47602 * 112.13948 * 319.43838 * 16 15 14 18 18 C 1.36940 * 118.64562 * 137.86281 * 17 16 15 19 19 H 1.07998 * 120.00042 * 206.49772 * 18 17 16 20 20 C 1.38810 * 119.99722 * 26.50409 * 18 17 16 21 21 N 1.31622 * 120.00327 * 15.68183 * 20 18 17 22 22 Si 1.86802 * 119.99911 * 195.68382 * 20 18 17 23 23 H 1.48501 * 109.46928 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47169 * 119.99739 * 22 20 18 25 25 H 1.48493 * 109.47076 * 239.99866 * 22 20 18 26 26 C 1.44663 * 122.54076 * 317.85569 * 17 16 15 27 27 N 1.28589 * 124.44425 * 89.99986 * 3 2 1 28 28 H 1.08999 * 109.46918 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47563 * 299.99871 * 1 2 3 30 30 H 1.09002 * 109.47377 * 60.00204 * 1 2 3 31 31 H 1.08998 * 109.47339 * 240.00604 * 2 1 3 32 32 H 1.08992 * 109.46877 * 119.99667 * 2 1 3 33 33 H 1.08998 * 109.46809 * 269.68345 * 6 5 4 34 34 H 1.08996 * 109.47392 * 149.67977 * 6 5 4 35 35 H 1.09008 * 109.46732 * 29.67888 * 6 5 4 36 36 H 0.97000 * 119.99725 * 359.97438 * 10 8 7 37 37 H 1.09004 * 108.51047 * 304.30970 * 13 11 10 38 38 H 1.08996 * 108.51542 * 61.95773 * 13 11 10 39 39 H 1.08996 * 109.49146 * 34.94284 * 14 13 11 40 40 H 1.09007 * 109.48661 * 155.01657 * 14 13 11 41 41 H 1.09000 * 109.36900 * 212.08458 * 15 14 13 42 42 H 1.09004 * 109.37181 * 331.83209 * 15 14 13 43 43 H 1.09003 * 108.94484 * 80.12048 * 16 15 14 44 44 H 1.08998 * 108.94935 * 198.74519 * 16 15 14 45 45 H 0.96995 * 120.00221 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.61486 * 330.83765 * 26 17 16 47 47 H 1.09000 * 109.32294 * 210.89667 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2551 2.0686 -1.0599 5 6 2.6819 3.2586 -0.7120 6 6 3.0804 4.3859 -1.6295 7 6 2.6851 3.2678 0.6972 8 6 3.0792 4.3829 1.5835 9 8 3.4513 5.4369 1.1055 10 7 3.0262 4.2314 2.9217 11 6 3.4174 5.3365 3.8002 12 1 3.1258 6.2817 3.3424 13 6 2.7368 5.1927 5.0962 14 6 3.0073 6.3290 6.0776 15 6 4.2877 6.0499 6.8251 16 6 5.4789 6.6944 6.0931 17 7 5.3777 6.5461 4.6281 18 6 5.6986 7.6163 3.8362 19 1 5.2561 7.7145 2.8559 20 6 6.5926 8.5746 4.2934 21 7 7.3613 8.3162 5.3302 22 14 6.7049 10.2311 3.4374 23 1 5.7424 10.2705 2.3072 24 1 6.3791 11.3107 4.4035 25 1 8.0829 10.4288 2.9205 26 6 4.9532 5.3150 3.9980 27 7 2.2606 2.0671 1.0604 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.1453 4.3151 -1.8507 34 1 2.8726 5.3397 -1.1446 35 1 2.5113 4.3180 -2.5568 36 1 2.7289 3.3905 3.3031 37 1 1.6627 5.1370 4.9187 38 1 3.0595 4.2580 5.5547 39 1 3.1024 7.2670 5.5307 40 1 2.1815 6.4024 6.7855 41 1 4.2160 6.4622 7.8316 42 1 4.4434 4.9727 6.8861 43 1 5.5137 7.7556 6.3399 44 1 6.4008 6.2232 6.4338 45 1 7.9857 8.9859 5.6499 46 1 5.2262 4.4685 4.6281 47 1 5.4426 5.2184 3.0289 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034551013.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:23 Heat of formation + Delta-G solvation = 88.797886 kcal Electronic energy + Delta-G solvation = -27945.693321 eV Core-core repulsion = 24166.753617 eV Total energy + Delta-G solvation = -3778.939704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.72134 -39.49700 -37.59040 -35.31050 -34.55429 -33.35229 -32.88037 -31.57843 -30.83630 -29.97857 -28.06000 -26.09503 -25.26130 -24.08774 -23.16770 -22.48972 -21.13066 -20.26275 -20.08588 -19.11195 -17.74636 -17.07024 -16.63777 -16.50525 -15.86216 -14.99694 -14.96363 -14.51606 -14.20027 -14.02403 -13.89221 -13.57097 -13.37542 -13.09865 -12.97047 -12.77091 -12.57867 -12.47549 -12.45981 -12.05544 -11.88048 -11.53019 -11.47283 -11.06602 -11.00586 -10.87845 -10.73684 -10.50425 -10.33872 -10.08474 -10.06604 -9.74103 -9.67042 -9.57578 -9.52059 -9.26721 -8.75343 -8.26595 -6.57799 -5.68898 -3.12163 1.32149 1.89582 1.97700 3.33107 3.45188 3.50125 3.53337 3.58651 3.82735 4.38013 4.43740 4.60768 4.65510 4.71921 4.94079 5.12060 5.20464 5.29834 5.41031 5.43306 5.50413 5.55481 5.58278 5.70327 5.72843 5.80941 5.92059 6.03688 6.08064 6.20241 6.27259 6.36383 6.43767 6.46205 6.63984 6.67255 6.76164 6.80065 6.87567 6.98027 7.15706 7.50574 7.78046 7.78481 7.98363 8.10609 8.49965 8.57774 9.34162 9.99258 10.43450 11.38851 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.016633 B = 0.003388 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.959567 B = 8262.649314 C = 9501.313108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.135 3.865 3 N -0.146 5.146 4 N -0.296 5.296 5 C 0.061 3.939 6 C -0.069 4.069 7 C -0.040 4.040 8 C 0.602 3.398 9 O -0.513 6.513 10 N -0.707 5.707 11 C 0.114 3.886 12 H 0.091 0.909 13 C -0.112 4.112 14 C -0.100 4.100 15 C -0.144 4.144 16 C 0.176 3.824 17 N -0.584 5.584 18 C -0.253 4.253 19 H 0.071 0.929 20 C 0.003 3.997 21 N -0.907 5.907 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.157 3.843 27 N -0.253 5.253 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.397 0.603 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.044 0.956 43 H 0.075 0.925 44 H 0.024 0.976 45 H 0.251 0.749 46 H 0.032 0.968 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.855 -16.678 -6.839 22.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.016 3.984 3 N -0.048 5.048 4 N -0.137 5.137 5 C -0.103 4.103 6 C -0.128 4.128 7 C -0.203 4.203 8 C 0.384 3.616 9 O -0.386 6.386 10 N -0.357 5.357 11 C 0.008 3.992 12 H 0.109 0.891 13 C -0.150 4.150 14 C -0.138 4.138 15 C -0.183 4.183 16 C 0.051 3.949 17 N -0.304 5.304 18 C -0.383 4.383 19 H 0.089 0.911 20 C -0.195 4.195 21 N -0.552 5.552 22 Si 0.729 3.271 23 H -0.200 1.200 24 H -0.217 1.217 25 H -0.219 1.219 26 C 0.028 3.972 27 N -0.101 5.101 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.231 0.769 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.094 0.906 44 H 0.042 0.958 45 H 0.061 0.939 46 H 0.050 0.950 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.887 -17.080 -7.063 23.118 hybrid contribution 0.205 0.999 -0.124 1.027 sum -13.682 -16.081 -7.187 22.303 Atomic orbital electron populations 1.22190 0.93027 1.03917 1.03816 1.22042 0.96099 0.74285 1.05989 1.48063 1.44269 1.13241 0.99266 1.73916 1.19167 1.05338 1.15310 1.23300 1.00365 0.93770 0.92838 1.20250 1.02007 0.93905 0.96631 1.23159 1.08908 0.93676 0.94546 1.16600 0.78313 0.84920 0.81816 1.90850 1.46411 1.26381 1.74993 1.46023 1.66736 1.17796 1.05181 1.21329 0.99478 0.89373 0.88983 0.89108 1.20577 0.99094 0.99624 0.95729 1.20825 0.96807 0.99252 0.96927 1.22084 0.97352 1.00050 0.98778 1.21057 0.91791 1.00445 0.81623 1.43617 1.76488 1.08874 1.01466 1.19374 1.19458 0.99583 0.99836 0.91105 1.25015 0.96084 0.99866 0.98510 1.70091 1.23996 1.33427 1.27669 0.86258 0.77436 0.84362 0.79053 1.20039 1.21723 1.21852 1.20935 0.90208 0.89124 0.96979 1.74307 1.15375 1.04536 1.15892 0.89517 0.91297 0.91366 0.87227 0.87163 0.89954 0.88368 0.90911 0.76907 0.93379 0.92789 0.90400 0.93407 0.92929 0.93703 0.90625 0.95780 0.93888 0.95007 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 10.24 37.16 0.38 -0.52 16 2 C 0.14 0.87 7.25 -4.04 -0.03 0.84 16 3 N -0.15 -1.69 3.94 -10.61 -0.04 -1.74 16 4 N -0.30 -3.90 12.01 33.92 0.41 -3.50 16 5 C 0.06 0.88 7.39 -81.88 -0.61 0.27 16 6 C -0.07 -0.86 10.00 36.01 0.36 -0.50 16 7 C -0.04 -0.61 7.21 -82.68 -0.60 -1.20 16 8 C 0.60 10.47 7.78 -12.35 -0.10 10.37 16 9 O -0.51 -10.58 14.86 5.31 0.08 -10.50 16 10 N -0.71 -11.27 5.05 -56.59 -0.29 -11.55 16 11 C 0.11 2.10 2.34 -69.79 -0.16 1.93 16 12 H 0.09 1.95 7.57 -51.93 -0.39 1.56 16 13 C -0.11 -1.78 4.55 -29.79 -0.14 -1.91 16 14 C -0.10 -1.71 5.51 -28.02 -0.15 -1.87 16 15 C -0.14 -2.65 5.70 -27.30 -0.16 -2.80 16 16 C 0.18 4.17 4.66 -2.94 -0.01 4.15 16 17 N -0.58 -14.57 2.27 -172.02 -0.39 -14.96 16 18 C -0.25 -7.07 9.45 -15.06 -0.14 -7.21 16 19 H 0.07 2.04 7.88 -52.49 -0.41 1.63 16 20 C 0.00 0.09 4.87 -17.43 -0.08 0.00 16 21 N -0.91 -26.54 11.01 55.49 0.61 -25.93 16 22 Si 0.90 22.39 29.58 -169.99 -5.03 17.36 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 C 0.16 3.41 5.24 -4.04 -0.02 3.39 16 27 N -0.25 -3.40 11.84 33.42 0.40 -3.00 16 28 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.10 1.35 6.77 -51.93 -0.35 0.99 16 35 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 36 H 0.40 5.36 8.35 -40.82 -0.34 5.01 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.79 7.34 -51.93 -0.38 0.41 16 39 H 0.08 1.56 7.48 -51.93 -0.39 1.17 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.04 0.78 7.31 -51.93 -0.38 0.40 16 43 H 0.08 2.00 6.33 -51.93 -0.33 1.67 16 44 H 0.02 0.62 8.03 -51.93 -0.42 0.20 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.03 0.65 8.05 -51.93 -0.42 0.23 16 47 H 0.05 1.18 7.97 -51.93 -0.41 0.76 16 LS Contribution 376.88 15.07 5.68 5.68 Total: -1.00 -32.98 376.88 -7.62 -40.60 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.59 Total: 2.59 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -1.46 Total: 4.95 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 0.70 Total: -60.67 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.03 Total: 17.36 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.98 -7.62 -40.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034551013.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.394 kcal (2) G-P(sol) polarization free energy of solvation -32.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds