Wall clock time and date at job start Fri Apr 10 2020 18:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.47090 * 2 1 4 4 N 1.28514 * 124.44083 * 270.02661 * 3 2 1 5 5 C 1.31132 * 109.05882 * 179.69131 * 4 3 2 6 6 C 1.50698 * 127.11326 * 180.28384 * 5 4 3 7 7 C 1.40922 * 105.77498 * 0.43127 * 5 4 3 8 8 C 1.47801 * 127.23703 * 179.84009 * 7 5 4 9 9 O 1.21555 * 119.99837 * 359.70237 * 8 7 5 10 10 N 1.34779 * 119.99814 * 179.70727 * 8 7 5 11 11 C 1.46500 * 119.99793 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47092 * 34.99824 * 11 10 8 13 13 C 1.52997 * 109.47007 * 154.99772 * 11 10 8 14 14 C 1.52999 * 109.47317 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47159 * 300.00546 * 14 13 11 16 16 H 1.09002 * 109.46935 * 299.99411 * 15 14 13 17 17 N 1.46500 * 109.47094 * 179.97438 * 15 14 13 18 18 C 1.36940 * 120.00263 * 154.99760 * 17 15 14 19 19 H 1.07999 * 119.99254 * 359.97438 * 18 17 15 20 20 C 1.38802 * 120.00349 * 180.02562 * 18 17 15 21 21 N 1.31621 * 120.00118 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00055 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47140 * 90.00326 * 22 20 18 24 24 H 1.48501 * 109.47304 * 210.00625 * 22 20 18 25 25 H 1.48505 * 109.47154 * 330.00465 * 22 20 18 26 26 C 1.52997 * 109.47452 * 59.99536 * 15 14 13 27 27 C 1.53000 * 109.47023 * 274.99565 * 11 10 8 28 28 N 1.28583 * 124.44522 * 89.99985 * 3 2 1 29 29 H 1.08997 * 109.47213 * 60.00334 * 1 2 3 30 30 H 1.08999 * 109.47215 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46986 * 300.00011 * 1 2 3 32 32 H 1.08996 * 109.47340 * 240.00002 * 2 1 3 33 33 H 1.08997 * 109.47213 * 119.99666 * 2 1 3 34 34 H 1.08997 * 109.47955 * 270.17150 * 6 5 4 35 35 H 1.08999 * 109.47107 * 30.17630 * 6 5 4 36 36 H 1.09000 * 109.47078 * 150.16737 * 6 5 4 37 37 H 0.97004 * 119.99983 * 359.97438 * 10 8 7 38 38 H 1.08996 * 109.47853 * 300.00060 * 13 11 10 39 39 H 1.09002 * 109.47153 * 60.00089 * 13 11 10 40 40 H 1.09002 * 109.46716 * 60.00091 * 14 13 11 41 41 H 1.09000 * 109.47486 * 180.02562 * 14 13 11 42 42 H 0.97002 * 120.00110 * 335.00521 * 17 15 14 43 43 H 0.97001 * 119.99778 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.46695 * 59.99734 * 26 15 14 45 45 H 1.08993 * 109.47194 * 179.97438 * 26 15 14 46 46 H 1.08992 * 109.47399 * 300.00063 * 27 11 10 47 47 H 1.09004 * 109.46724 * 60.00549 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2601 2.0667 -1.0599 5 6 2.6754 3.2609 -0.7120 6 6 3.0655 4.3910 -1.6295 7 6 2.6848 3.2679 0.6971 8 6 3.0789 4.3831 1.5834 9 8 3.4506 5.4371 1.1053 10 7 3.0262 4.2314 2.9215 11 6 3.4173 5.3366 3.8000 12 1 3.1264 6.2832 3.3445 13 6 2.7181 5.1852 5.1524 14 6 3.1270 6.3391 6.0701 15 6 4.6432 6.3156 6.2743 16 1 4.9338 5.3688 6.7296 17 7 5.0349 7.4208 7.1525 18 6 6.1875 7.3364 7.8870 19 1 6.8076 6.4548 7.8191 20 6 6.5583 8.3834 8.7195 21 7 7.6665 8.3024 9.4250 22 14 5.4854 9.9079 8.8374 23 1 4.4868 9.7277 9.9216 24 1 6.3343 11.0888 9.1376 25 1 4.7820 10.1193 7.5467 26 6 5.3425 6.4670 4.9219 27 6 4.9334 5.3136 4.0044 28 7 2.2607 2.0670 1.0604 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.1297 4.3248 -1.8555 35 1 2.4928 4.3223 -2.5544 36 1 2.8560 5.3433 -1.1424 37 1 2.7292 3.3904 3.3030 38 1 1.6380 5.2016 5.0069 39 1 3.0090 4.2386 5.6079 40 1 2.8364 7.2859 5.6148 41 1 2.6292 6.2310 7.0337 42 1 4.4776 8.2125 7.2138 43 1 7.9258 9.0342 10.0065 44 1 5.0518 7.4138 4.4666 45 1 6.4225 6.4507 5.0675 46 1 5.2244 4.3671 4.4598 47 1 5.4316 5.4216 3.0408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034802745.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:31 Heat of formation + Delta-G solvation = 66.504539 kcal Electronic energy + Delta-G solvation = -26892.076830 eV Core-core repulsion = 23112.170414 eV Total energy + Delta-G solvation = -3779.906416 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.97326 -39.93032 -38.02194 -35.53151 -34.99602 -33.54346 -32.79880 -31.75800 -30.89820 -30.46091 -28.51016 -27.71121 -25.42502 -23.47484 -22.82303 -22.40812 -21.39472 -21.05207 -20.45442 -19.65979 -18.10339 -17.54901 -17.23836 -16.84338 -16.16668 -15.22390 -15.05306 -14.86215 -14.45438 -14.24811 -14.11339 -13.78526 -13.72478 -13.39896 -13.18400 -12.95966 -12.91212 -12.68107 -12.62462 -12.16285 -12.03101 -11.95824 -11.76592 -11.72769 -11.30503 -11.14264 -10.86756 -10.85832 -10.66442 -10.58957 -10.26517 -10.19396 -10.01211 -9.80154 -9.54181 -9.53106 -8.99982 -8.85221 -7.22455 -5.73503 -3.08599 1.03921 1.63536 1.75406 2.95213 3.10550 3.40679 3.43881 3.48367 3.57190 4.22632 4.24522 4.44804 4.50481 4.62575 4.65093 4.85966 4.95282 4.98716 5.05256 5.13740 5.19589 5.41410 5.44546 5.46449 5.49751 5.54854 5.58116 5.64184 5.68048 5.78015 5.82395 5.95611 6.00342 6.14140 6.20653 6.21530 6.22256 6.38839 6.48511 6.55427 6.66784 6.92898 7.08489 7.35830 7.83931 8.03515 8.05876 8.45917 9.24871 9.97615 10.17664 11.44950 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.027420 B = 0.002273 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.894913 B =12316.298861 C =12708.180741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.133 3.867 3 N -0.141 5.141 4 N -0.294 5.294 5 C 0.062 3.938 6 C -0.069 4.069 7 C -0.047 4.047 8 C 0.608 3.392 9 O -0.523 6.523 10 N -0.709 5.709 11 C 0.145 3.855 12 H 0.090 0.910 13 C -0.119 4.119 14 C -0.124 4.124 15 C 0.181 3.819 16 H 0.055 0.945 17 N -0.750 5.750 18 C -0.240 4.240 19 H 0.090 0.910 20 C 0.002 3.998 21 N -0.935 5.935 22 Si 0.884 3.116 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.276 1.276 26 C -0.132 4.132 27 C -0.124 4.124 28 N -0.250 5.250 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.404 0.596 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.056 0.944 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.298 -17.478 -21.500 32.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.044 5.044 4 N -0.135 5.135 5 C -0.102 4.102 6 C -0.128 4.128 7 C -0.210 4.210 8 C 0.391 3.609 9 O -0.397 6.397 10 N -0.360 5.360 11 C 0.042 3.958 12 H 0.108 0.892 13 C -0.157 4.157 14 C -0.162 4.162 15 C 0.072 3.928 16 H 0.073 0.927 17 N -0.392 5.392 18 C -0.370 4.370 19 H 0.108 0.892 20 C -0.193 4.193 21 N -0.583 5.583 22 Si 0.715 3.285 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.173 4.173 27 C -0.164 4.164 28 N -0.098 5.098 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.238 0.762 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.253 -18.066 -21.689 32.572 hybrid contribution -0.484 1.347 0.356 1.475 sum -16.737 -16.719 -21.333 31.855 Atomic orbital electron populations 1.22194 0.92834 1.04114 1.03837 1.22105 0.96243 0.74030 1.06178 1.48110 1.43750 1.13383 0.99155 1.73948 1.19043 1.05188 1.15296 1.23302 1.00484 0.93715 0.92710 1.20246 1.02091 0.93678 0.96784 1.23002 1.09776 0.93717 0.94467 1.16603 0.77693 0.84900 0.81684 1.90804 1.47073 1.26610 1.75194 1.45999 1.66884 1.17937 1.05134 1.21190 0.95328 0.89807 0.89507 0.89151 1.21736 0.99614 1.00229 0.94149 1.21792 0.97981 0.97496 0.98975 1.20226 0.90649 0.92336 0.89602 0.92675 1.42799 1.27194 1.17776 1.51393 1.19078 0.98071 1.03168 1.16692 0.89243 1.24677 0.97311 0.98111 0.99242 1.69705 1.24106 1.33027 1.31502 0.86546 0.80201 0.84083 0.77691 1.21172 1.21839 1.20265 1.22176 1.01910 0.96689 0.96508 1.21897 0.94158 1.00098 1.00220 1.74309 1.14971 1.04460 1.16024 0.91327 0.89341 0.91258 0.87069 0.87015 0.89979 0.90716 0.88502 0.76156 0.91719 0.91273 0.92030 0.91232 0.80701 0.93135 0.92527 0.91269 0.92050 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.63 10.24 37.16 0.38 -0.25 16 2 C 0.13 0.62 7.24 -4.04 -0.03 0.59 16 3 N -0.14 -1.32 3.94 -10.61 -0.04 -1.37 16 4 N -0.29 -3.19 12.01 33.92 0.41 -2.78 16 5 C 0.06 0.71 7.39 -81.88 -0.61 0.11 16 6 C -0.07 -0.65 9.99 36.00 0.36 -0.29 16 7 C -0.05 -0.57 7.21 -82.68 -0.60 -1.17 16 8 C 0.61 8.06 7.79 -12.35 -0.10 7.96 16 9 O -0.52 -8.18 14.87 5.32 0.08 -8.11 16 10 N -0.71 -8.25 5.07 -54.76 -0.28 -8.53 16 11 C 0.15 1.87 2.46 -67.93 -0.17 1.70 16 12 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 13 C -0.12 -1.40 5.39 -26.73 -0.14 -1.55 16 14 C -0.12 -1.83 5.39 -26.73 -0.14 -1.98 16 15 C 0.18 3.38 2.77 -67.93 -0.19 3.19 16 16 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 17 N -0.75 -17.59 4.92 -53.43 -0.26 -17.86 16 18 C -0.24 -6.75 10.41 -15.06 -0.16 -6.91 16 19 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 20 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 21 N -0.94 -29.53 13.97 55.49 0.78 -28.76 16 22 Si 0.88 22.27 27.73 -169.99 -4.71 17.55 16 23 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 25 H -0.28 -6.57 6.52 56.52 0.37 -6.21 16 26 C -0.13 -2.32 5.50 -26.76 -0.15 -2.47 16 27 C -0.12 -1.81 5.49 -26.75 -0.15 -1.96 16 28 N -0.25 -2.70 11.84 33.42 0.40 -2.31 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.99 6.77 -51.93 -0.35 0.64 16 37 H 0.40 3.96 8.37 -40.82 -0.34 3.62 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.36 8.34 5.66 -40.82 -0.23 8.11 16 43 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 382.83 15.07 5.77 5.77 Total: -1.00 -34.54 382.83 -7.32 -41.86 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -7.67 Total: 7.56 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -1.78 Total: -3.04 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: 1.00 Total: -61.60 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.08 Total: -8.11 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.55 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.54 -7.32 -41.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034802745.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.362 kcal (2) G-P(sol) polarization free energy of solvation -34.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds