Wall clock time and date at job start Fri Apr 10 2020 18:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.47090 * 2 1 4 4 N 1.28514 * 124.44083 * 270.02661 * 3 2 1 5 5 C 1.31132 * 109.05882 * 179.69131 * 4 3 2 6 6 C 1.50698 * 127.11326 * 180.28384 * 5 4 3 7 7 C 1.40922 * 105.77498 * 0.43127 * 5 4 3 8 8 C 1.47801 * 127.23703 * 179.84009 * 7 5 4 9 9 O 1.21555 * 119.99837 * 359.70237 * 8 7 5 10 10 N 1.34779 * 119.99814 * 179.70727 * 8 7 5 11 11 C 1.46500 * 119.99793 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47092 * 34.99824 * 11 10 8 13 13 C 1.52997 * 109.47007 * 154.99772 * 11 10 8 14 14 C 1.52999 * 109.47317 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47159 * 300.00546 * 14 13 11 16 16 H 1.09002 * 109.46935 * 299.99411 * 15 14 13 17 17 N 1.46500 * 109.47094 * 179.97438 * 15 14 13 18 18 C 1.36940 * 120.00263 * 154.99760 * 17 15 14 19 19 H 1.07999 * 119.99254 * 359.97438 * 18 17 15 20 20 C 1.38802 * 120.00349 * 180.02562 * 18 17 15 21 21 N 1.31621 * 120.00118 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00055 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47140 * 90.00326 * 22 20 18 24 24 H 1.48501 * 109.47304 * 210.00625 * 22 20 18 25 25 H 1.48505 * 109.47154 * 330.00465 * 22 20 18 26 26 C 1.52997 * 109.47452 * 59.99536 * 15 14 13 27 27 C 1.53000 * 109.47023 * 274.99565 * 11 10 8 28 28 N 1.28583 * 124.44522 * 89.99985 * 3 2 1 29 29 H 1.08997 * 109.47213 * 60.00334 * 1 2 3 30 30 H 1.08999 * 109.47215 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46986 * 300.00011 * 1 2 3 32 32 H 1.08996 * 109.47340 * 240.00002 * 2 1 3 33 33 H 1.08997 * 109.47213 * 119.99666 * 2 1 3 34 34 H 1.08997 * 109.47955 * 270.17150 * 6 5 4 35 35 H 1.08999 * 109.47107 * 30.17630 * 6 5 4 36 36 H 1.09000 * 109.47078 * 150.16737 * 6 5 4 37 37 H 0.97004 * 119.99983 * 359.97438 * 10 8 7 38 38 H 1.08996 * 109.47853 * 300.00060 * 13 11 10 39 39 H 1.09002 * 109.47153 * 60.00089 * 13 11 10 40 40 H 1.09002 * 109.46716 * 60.00091 * 14 13 11 41 41 H 1.09000 * 109.47486 * 180.02562 * 14 13 11 42 42 H 0.97002 * 120.00110 * 335.00521 * 17 15 14 43 43 H 0.97001 * 119.99778 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.46695 * 59.99734 * 26 15 14 45 45 H 1.08993 * 109.47194 * 179.97438 * 26 15 14 46 46 H 1.08992 * 109.47399 * 300.00063 * 27 11 10 47 47 H 1.09004 * 109.46724 * 60.00549 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2601 2.0667 -1.0599 5 6 2.6754 3.2609 -0.7120 6 6 3.0655 4.3910 -1.6295 7 6 2.6848 3.2679 0.6971 8 6 3.0789 4.3831 1.5834 9 8 3.4506 5.4371 1.1053 10 7 3.0262 4.2314 2.9215 11 6 3.4173 5.3366 3.8000 12 1 3.1264 6.2832 3.3445 13 6 2.7181 5.1852 5.1524 14 6 3.1270 6.3391 6.0701 15 6 4.6432 6.3156 6.2743 16 1 4.9338 5.3688 6.7296 17 7 5.0349 7.4208 7.1525 18 6 6.1875 7.3364 7.8870 19 1 6.8076 6.4548 7.8191 20 6 6.5583 8.3834 8.7195 21 7 7.6665 8.3024 9.4250 22 14 5.4854 9.9079 8.8374 23 1 4.4868 9.7277 9.9216 24 1 6.3343 11.0888 9.1376 25 1 4.7820 10.1193 7.5467 26 6 5.3425 6.4670 4.9219 27 6 4.9334 5.3136 4.0044 28 7 2.2607 2.0670 1.0604 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.1297 4.3248 -1.8555 35 1 2.4928 4.3223 -2.5544 36 1 2.8560 5.3433 -1.1424 37 1 2.7292 3.3904 3.3030 38 1 1.6380 5.2016 5.0069 39 1 3.0090 4.2386 5.6079 40 1 2.8364 7.2859 5.6148 41 1 2.6292 6.2310 7.0337 42 1 4.4776 8.2125 7.2138 43 1 7.9258 9.0342 10.0065 44 1 5.0518 7.4138 4.4666 45 1 6.4225 6.4507 5.0675 46 1 5.2244 4.3671 4.4598 47 1 5.4316 5.4216 3.0408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034802745.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:30 Heat of formation + Delta-G solvation = 41.515513 kcal Electronic energy + Delta-G solvation = -26893.160435 eV Core-core repulsion = 23112.170414 eV Total energy + Delta-G solvation = -3780.990022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.75510 -41.00776 -39.30095 -36.53961 -36.04325 -34.83202 -33.97486 -32.86026 -32.28688 -31.69480 -29.60228 -28.77154 -26.32951 -25.05202 -23.77580 -23.53159 -22.40216 -22.13843 -21.47059 -21.07152 -19.61197 -18.80223 -18.12127 -17.58997 -17.25663 -16.76701 -16.27679 -15.90018 -15.60176 -15.28529 -15.01106 -14.95596 -14.85745 -14.63448 -14.34853 -14.25339 -13.92696 -13.60720 -13.43546 -13.38318 -13.09727 -13.03755 -12.89555 -12.60092 -12.41329 -12.35847 -12.30139 -12.08353 -12.04276 -11.98353 -11.77975 -11.47459 -11.40799 -11.21779 -11.16076 -10.86875 -10.34377 -10.02555 -9.27572 -7.99804 -5.32515 0.17890 0.80434 1.16570 1.39599 1.42924 1.50195 1.99777 2.13008 2.50868 2.79998 3.31025 3.54407 3.65359 3.73996 3.84383 3.87139 3.90848 3.96188 4.22798 4.26140 4.33399 4.36323 4.41711 4.52142 4.59171 4.60231 4.64018 4.70379 4.73707 4.79729 4.85429 4.94687 4.96244 5.09891 5.14966 5.15048 5.24797 5.27121 5.28248 5.44510 5.51492 5.56013 5.61980 5.80954 6.24985 6.41548 7.01512 7.10802 7.11416 7.88618 8.07431 9.21900 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.027420 B = 0.002273 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.894913 B =12316.298861 C =12708.180741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.119 3.881 3 N -0.131 5.131 4 N -0.301 5.301 5 C 0.048 3.952 6 C -0.067 4.067 7 C -0.070 4.070 8 C 0.608 3.392 9 O -0.553 6.553 10 N -0.697 5.697 11 C 0.153 3.847 12 H 0.079 0.921 13 C -0.108 4.108 14 C -0.115 4.115 15 C 0.174 3.826 16 H 0.045 0.955 17 N -0.753 5.753 18 C -0.225 4.225 19 H 0.055 0.945 20 C -0.069 4.069 21 N -0.986 5.986 22 Si 0.956 3.044 23 H -0.276 1.276 24 H -0.299 1.299 25 H -0.252 1.252 26 C -0.124 4.124 27 C -0.114 4.114 28 N -0.247 5.247 29 H 0.056 0.944 30 H 0.117 0.883 31 H 0.057 0.943 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.415 0.585 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.365 0.635 43 H 0.256 0.744 44 H 0.052 0.948 45 H 0.037 0.963 46 H 0.069 0.931 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.191 -18.769 -22.677 35.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.002 3.998 3 N -0.035 5.035 4 N -0.142 5.142 5 C -0.115 4.115 6 C -0.125 4.125 7 C -0.231 4.231 8 C 0.392 3.608 9 O -0.429 6.429 10 N -0.348 5.348 11 C 0.049 3.951 12 H 0.098 0.902 13 C -0.146 4.146 14 C -0.154 4.154 15 C 0.066 3.934 16 H 0.064 0.936 17 N -0.396 5.396 18 C -0.356 4.356 19 H 0.073 0.927 20 C -0.260 4.260 21 N -0.637 5.637 22 Si 0.783 3.217 23 H -0.202 1.202 24 H -0.226 1.226 25 H -0.177 1.177 26 C -0.164 4.164 27 C -0.154 4.154 28 N -0.096 5.096 29 H 0.075 0.925 30 H 0.135 0.865 31 H 0.076 0.924 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.252 0.748 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.198 0.802 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.056 0.944 46 H 0.087 0.913 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.197 -19.405 -22.903 35.631 hybrid contribution 0.438 1.541 0.653 1.730 sum -18.759 -17.864 -22.250 34.148 Atomic orbital electron populations 1.22171 0.91927 1.05604 1.02609 1.22660 0.96966 0.72030 1.08171 1.48714 1.42039 1.14310 0.98473 1.73947 1.19311 1.05132 1.15846 1.23615 1.00606 0.94412 0.92861 1.20255 1.02660 0.92540 0.97062 1.22848 1.11549 0.94076 0.94649 1.16758 0.77132 0.84804 0.82072 1.90786 1.48477 1.27859 1.75764 1.45814 1.66345 1.18070 1.04555 1.20995 0.93845 0.89899 0.90378 0.90246 1.21661 1.01022 0.99483 0.92431 1.21689 0.94344 0.99178 1.00198 1.20485 0.93791 0.90287 0.88802 0.93642 1.42838 1.25783 1.19322 1.51624 1.19028 0.98737 1.01619 1.16191 0.92697 1.25523 0.99029 1.01898 0.99583 1.69893 1.26549 1.34213 1.33076 0.85390 0.78289 0.79161 0.78822 1.20215 1.22634 1.17709 1.21992 0.99783 0.97952 0.96697 1.21767 0.95766 0.98948 0.98871 1.74265 1.14759 1.04083 1.16525 0.92520 0.86488 0.92417 0.85147 0.85047 0.89502 0.89000 0.89686 0.74794 0.89000 0.89894 0.91556 0.90602 0.80193 0.93497 0.92908 0.94433 0.91279 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 10.24 71.98 0.74 -0.06 16 2 C 0.12 0.78 7.24 86.38 0.63 1.40 16 3 N -0.13 -2.19 3.94 -187.49 -0.74 -2.93 16 4 N -0.30 -6.08 12.01 -46.59 -0.56 -6.64 16 5 C 0.05 1.06 7.39 43.32 0.32 1.38 16 6 C -0.07 -1.21 9.99 71.24 0.71 -0.50 16 7 C -0.07 -1.64 7.21 42.24 0.30 -1.33 16 8 C 0.61 15.58 7.79 86.77 0.68 16.26 16 9 O -0.55 -17.21 14.87 -3.89 -0.06 -17.27 16 10 N -0.70 -14.93 5.07 -445.45 -2.26 -17.19 16 11 C 0.15 3.65 2.46 44.99 0.11 3.76 16 12 H 0.08 2.14 7.58 -2.39 -0.02 2.13 16 13 C -0.11 -2.19 5.39 30.59 0.16 -2.03 16 14 C -0.12 -3.13 5.39 30.60 0.16 -2.96 16 15 C 0.17 6.37 2.77 44.99 0.12 6.50 16 16 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 17 N -0.75 -35.00 4.92 -322.94 -1.59 -36.59 16 18 C -0.22 -12.89 10.41 84.03 0.87 -12.02 16 19 H 0.06 3.47 8.06 -2.91 -0.02 3.44 16 20 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 21 N -0.99 -64.15 13.97 21.65 0.30 -63.85 16 22 Si 0.96 46.09 27.73 68.60 1.90 48.00 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 24 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 25 H -0.25 -11.03 6.52 99.48 0.65 -10.38 16 26 C -0.12 -4.36 5.50 30.58 0.17 -4.19 16 27 C -0.11 -3.24 5.49 30.58 0.17 -3.08 16 28 N -0.25 -4.91 11.84 -48.17 -0.57 -5.48 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 1.75 6.77 -2.39 -0.02 1.74 16 37 H 0.42 7.08 8.37 -92.71 -0.78 6.30 16 38 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.36 16.25 5.66 -92.71 -0.52 15.73 16 43 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 44 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -76.88 382.83 1.67 -75.21 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: -0.38 Total: 27.29 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 5.62 Total: -0.55 kcal Atomic # 7 Polarization: -127.26 SS G_CDS: -5.42 Total: -132.68 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.06 Total: -17.27 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.90 Total: 48.00 kcal Total: -76.88 1.67 -75.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034802745.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.724 kcal (2) G-P(sol) polarization free energy of solvation -76.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds