Wall clock time and date at job start Fri Apr 10 2020 18:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49908 * 2 1 4 4 C 1.53188 * 109.49955 * 239.93411 * 2 1 3 5 5 N 1.46925 * 108.77700 * 185.38400 * 4 2 1 6 6 C 1.34784 * 120.62853 * 233.58870 * 5 4 2 7 7 O 1.21279 * 119.99875 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99582 * 180.02562 * 6 5 4 9 9 C 1.53006 * 109.46998 * 179.97438 * 8 6 5 10 10 C 1.50691 * 109.47344 * 179.97438 * 9 8 6 11 11 C 1.39677 * 127.04943 * 124.70654 * 10 9 8 12 12 N 1.31386 * 105.90072 * 179.84212 * 11 10 9 13 13 N 1.28595 * 108.71844 * 0.43110 * 12 11 10 14 14 C 1.46500 * 124.62058 * 179.71676 * 13 12 11 15 15 N 1.28605 * 110.75825 * 359.71804 * 13 12 11 16 16 C 1.46920 * 118.73823 * 53.60843 * 5 4 2 17 17 C 1.53193 * 108.77550 * 306.39057 * 16 5 4 18 18 C 1.53040 * 109.31153 * 54.63854 * 17 16 5 19 19 H 1.08997 * 109.46043 * 178.61049 * 18 17 16 20 20 N 1.46505 * 109.46056 * 58.64998 * 18 17 16 21 21 C 1.36946 * 119.99484 * 84.93338 * 20 18 17 22 22 H 1.07997 * 120.00087 * 0.02562 * 21 20 18 23 23 C 1.38805 * 119.99308 * 179.97438 * 21 20 18 24 24 N 1.31623 * 119.99372 * 179.97438 * 23 21 20 25 25 Si 1.86791 * 120.00770 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.47241 * 89.99529 * 25 23 21 27 27 H 1.48498 * 109.47806 * 210.00081 * 25 23 21 28 28 H 1.48507 * 109.47156 * 329.99832 * 25 23 21 29 29 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46897 * 300.00381 * 1 2 3 31 31 H 1.09001 * 109.46854 * 59.99814 * 1 2 3 32 32 H 1.09000 * 109.58701 * 305.17103 * 4 2 1 33 33 H 1.09005 * 109.58454 * 65.59138 * 4 2 1 34 34 H 1.09001 * 109.47077 * 299.99541 * 8 6 5 35 35 H 1.08999 * 109.47395 * 60.00261 * 8 6 5 36 36 H 1.09007 * 109.46993 * 300.00268 * 9 8 6 37 37 H 1.09004 * 109.46672 * 59.99544 * 9 8 6 38 38 H 1.08001 * 127.05053 * 0.02562 * 11 10 9 39 39 H 1.09003 * 109.46614 * 269.99706 * 14 13 12 40 40 H 1.08997 * 109.46692 * 29.99812 * 14 13 12 41 41 H 1.09000 * 109.46992 * 150.00302 * 14 13 12 42 42 H 1.09004 * 109.58885 * 66.17987 * 16 5 4 43 43 H 1.09000 * 109.58663 * 186.46129 * 16 5 4 44 44 H 1.09005 * 109.49580 * 174.58602 * 17 16 5 45 45 H 1.08994 * 109.49562 * 294.64929 * 17 16 5 46 46 H 0.96999 * 120.00270 * 264.93201 * 20 18 17 47 47 H 0.97003 * 119.99726 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7234 -1.2497 5 7 3.5047 -0.8282 -1.1701 6 6 4.2808 -0.3849 -2.1790 7 8 3.7723 0.1055 -3.1648 8 6 5.7803 -0.4999 -2.0825 9 6 6.4182 0.0719 -3.3503 10 6 7.9177 -0.0425 -3.2537 11 6 8.7746 -0.6651 -4.1641 12 7 9.9859 -0.5175 -3.6772 13 7 9.9085 0.1245 -2.5656 14 6 11.0560 0.4739 -1.7246 15 7 8.6864 0.4179 -2.2929 16 6 4.1059 -1.4256 0.0300 17 6 3.5715 -0.6942 1.2655 18 6 2.0414 -0.7230 1.2482 19 1 1.6588 -0.2247 2.1389 20 7 1.5796 -2.1132 1.2305 21 6 1.4500 -2.8065 2.4044 22 1 1.6879 -2.3284 3.3430 23 6 1.0119 -4.1235 2.3877 24 7 0.8879 -4.7901 3.5158 25 14 0.5998 -4.9504 0.7642 26 1 1.8152 -5.6087 0.2214 27 1 -0.4592 -5.9685 0.9819 28 1 0.1156 -3.9314 -0.2015 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6057 -1.7214 -1.2982 33 1 1.7633 -0.1576 -2.1389 34 1 6.1324 0.0580 -1.2148 35 1 6.0583 -1.5486 -1.9776 36 1 6.0660 -0.4863 -4.2178 37 1 6.1401 1.1206 -3.4557 38 1 8.4984 -1.1630 -5.0819 39 1 11.2400 -0.3281 -1.0097 40 1 11.9371 0.6115 -2.3512 41 1 10.8443 1.3982 -1.1870 42 1 3.8386 -2.4808 0.0860 43 1 5.1903 -1.3252 -0.0159 44 1 3.9345 -1.1888 2.1664 45 1 3.9166 0.3396 1.2538 46 1 1.3656 -2.5425 0.3875 47 1 0.5813 -5.7103 3.5042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036182705.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:44 Heat of formation + Delta-G solvation = 83.113409 kcal Electronic energy + Delta-G solvation = -27532.813030 eV Core-core repulsion = 23753.626829 eV Total energy + Delta-G solvation = -3779.186202 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.77220 -40.16273 -37.94939 -35.08877 -34.40015 -33.23780 -32.86673 -31.79059 -31.46457 -29.75774 -28.24162 -26.55491 -25.43533 -24.07669 -23.14953 -22.57475 -21.68389 -20.90190 -19.47240 -18.20906 -17.90283 -17.56515 -17.09129 -16.82762 -15.74242 -15.64159 -15.03696 -14.82723 -14.50303 -14.23437 -13.93736 -13.74177 -13.57466 -13.46719 -13.33497 -13.09877 -12.82748 -12.59047 -12.41134 -12.15216 -11.83752 -11.67800 -11.58281 -11.39924 -11.12279 -11.02148 -10.99852 -10.93477 -10.60672 -10.51557 -10.44604 -10.22908 -9.86992 -9.65020 -9.57107 -9.32411 -8.97147 -8.34244 -7.30230 -5.80927 -3.16146 1.56869 2.07646 2.18430 2.76299 3.18624 3.32696 3.35563 3.42333 3.82595 4.40909 4.54626 4.63849 4.65595 4.70958 4.89890 4.95336 5.03331 5.09867 5.14850 5.18872 5.25425 5.35903 5.43747 5.53218 5.60325 5.62535 5.65278 5.78032 5.84120 5.89012 5.93972 5.94126 6.07000 6.09038 6.22013 6.30462 6.38092 6.43977 6.48684 6.56920 6.66385 6.75395 6.89281 7.61957 7.95730 8.09244 8.30887 8.38354 9.16632 9.89275 10.09218 11.37531 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.015924 B = 0.002949 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.951624 B = 9493.197715 C =10062.978606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 H 0.071 0.929 4 C 0.118 3.882 5 N -0.604 5.604 6 C 0.515 3.485 7 O -0.554 6.554 8 C -0.133 4.133 9 C -0.012 4.012 10 C 0.007 3.993 11 C -0.022 4.022 12 N -0.292 5.292 13 N -0.162 5.162 14 C 0.109 3.891 15 N -0.285 5.285 16 C 0.111 3.889 17 C -0.149 4.149 18 C 0.185 3.815 19 H 0.059 0.941 20 N -0.744 5.744 21 C -0.240 4.240 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.934 5.934 25 Si 0.878 3.122 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.277 1.277 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.198 0.802 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.053 0.947 46 H 0.360 0.640 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.977 11.509 -12.171 23.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 H 0.089 0.911 4 C -0.005 4.005 5 N -0.336 5.336 6 C 0.303 3.697 7 O -0.433 6.433 8 C -0.174 4.174 9 C -0.052 4.052 10 C -0.156 4.156 11 C -0.204 4.204 12 N -0.134 5.134 13 N -0.062 5.062 14 C -0.031 4.031 15 N -0.128 5.128 16 C -0.011 4.011 17 C -0.190 4.190 18 C 0.075 3.925 19 H 0.077 0.923 20 N -0.387 5.387 21 C -0.370 4.370 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.581 5.581 25 Si 0.709 3.291 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.204 1.204 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.214 0.786 39 H 0.108 0.892 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.071 0.929 46 H 0.194 0.806 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 16.826 12.014 -11.621 23.717 hybrid contribution -0.891 -1.151 -1.391 2.013 sum 15.935 10.863 -13.012 23.264 Atomic orbital electron populations 1.21679 0.94258 1.02806 1.00882 1.21749 0.96483 0.99286 0.95621 0.91065 1.21627 0.78979 1.00950 0.98939 1.48170 1.07005 1.60055 1.18418 1.20550 0.89230 0.77454 0.82440 1.90659 1.75694 1.45681 1.31278 1.21625 0.91950 1.03687 1.00123 1.19633 0.83867 1.03447 0.98245 1.23239 0.98106 1.01454 0.92807 1.24691 0.87763 1.04922 1.03061 1.74035 1.25746 1.13945 0.99648 1.47911 1.05655 1.37917 1.14755 1.22110 0.83919 1.03300 0.93807 1.74011 0.91405 1.21638 1.25705 1.21758 0.96874 0.98587 0.83888 1.22492 0.99938 0.99031 0.97579 1.20181 0.90972 0.86125 0.95242 0.92253 1.42849 1.80597 1.09440 1.05861 1.19055 1.37521 0.94053 0.86341 0.89183 1.24639 1.01563 0.96739 0.96036 1.69694 1.53168 1.10835 1.24447 0.86658 0.78179 0.79567 0.84717 1.21158 1.21745 1.20367 0.91670 0.92361 0.93545 0.91647 0.89457 0.88311 0.88903 0.88816 0.89271 0.78564 0.89230 0.88068 0.87939 0.90289 0.90729 0.90248 0.92868 0.80585 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.06 37.16 0.34 -1.74 16 2 C -0.11 -1.71 2.67 -90.50 -0.24 -1.95 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.12 1.84 5.42 -3.71 -0.02 1.82 16 5 N -0.60 -8.99 2.97 -172.77 -0.51 -9.51 16 6 C 0.51 7.39 7.70 -10.98 -0.08 7.31 16 7 O -0.55 -9.38 15.40 5.56 0.09 -9.29 16 8 C -0.13 -1.49 4.02 -27.88 -0.11 -1.60 16 9 C -0.01 -0.13 5.10 -27.88 -0.14 -0.27 16 10 C 0.01 0.07 6.61 -82.26 -0.54 -0.47 16 11 C -0.02 -0.22 12.15 -17.21 -0.21 -0.43 16 12 N -0.29 -3.22 12.05 30.68 0.37 -2.85 16 13 N -0.16 -1.64 4.35 -16.64 -0.07 -1.72 16 14 C 0.11 0.56 11.57 59.85 0.69 1.25 16 15 N -0.29 -3.29 12.04 33.71 0.41 -2.88 16 16 C 0.11 1.63 6.08 -3.71 -0.02 1.60 16 17 C -0.15 -2.32 5.78 -26.61 -0.15 -2.47 16 18 C 0.18 3.25 2.53 -67.89 -0.17 3.08 16 19 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 20 N -0.74 -16.03 3.45 -53.38 -0.18 -16.22 16 21 C -0.24 -6.31 10.41 -15.06 -0.16 -6.47 16 22 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 23 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 24 N -0.93 -28.46 13.97 55.49 0.78 -27.68 16 25 Si 0.88 21.46 27.73 -169.99 -4.71 16.74 16 26 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 28 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 29 H 0.06 1.11 7.54 -51.93 -0.39 0.72 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.11 6.64 -51.93 -0.34 0.77 16 33 H 0.09 1.37 7.01 -51.93 -0.36 1.01 16 34 H 0.10 1.07 7.69 -51.93 -0.40 0.67 16 35 H 0.09 0.97 7.94 -51.93 -0.41 0.56 16 36 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 37 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 38 H 0.20 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 1.33 7.74 -51.93 -0.40 0.93 16 43 H 0.07 0.90 5.93 -51.93 -0.31 0.59 16 44 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.36 7.83 3.79 -40.82 -0.15 7.67 16 47 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 375.40 15.07 5.66 5.66 Total: -1.00 -33.74 375.40 -6.55 -40.29 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -7.43 Total: 7.71 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -0.93 Total: -0.26 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: 0.78 Total: -60.85 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.71 Total: 16.74 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.74 -6.55 -40.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036182705.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.399 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds