Wall clock time and date at job start Fri Apr 10 2020 18:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49908 * 2 1 4 4 C 1.53188 * 109.49955 * 239.93411 * 2 1 3 5 5 N 1.46925 * 108.77700 * 185.38400 * 4 2 1 6 6 C 1.34784 * 120.62853 * 233.58870 * 5 4 2 7 7 O 1.21279 * 119.99875 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99582 * 180.02562 * 6 5 4 9 9 C 1.53006 * 109.46998 * 179.97438 * 8 6 5 10 10 C 1.50691 * 109.47344 * 179.97438 * 9 8 6 11 11 C 1.39677 * 127.04943 * 124.70654 * 10 9 8 12 12 N 1.31386 * 105.90072 * 179.84212 * 11 10 9 13 13 N 1.28595 * 108.71844 * 0.43110 * 12 11 10 14 14 C 1.46500 * 124.62058 * 179.71676 * 13 12 11 15 15 N 1.28605 * 110.75825 * 359.71804 * 13 12 11 16 16 C 1.46920 * 118.73823 * 53.60843 * 5 4 2 17 17 C 1.53193 * 108.77550 * 306.39057 * 16 5 4 18 18 C 1.53040 * 109.31153 * 54.63854 * 17 16 5 19 19 H 1.08997 * 109.46043 * 178.61049 * 18 17 16 20 20 N 1.46505 * 109.46056 * 58.64998 * 18 17 16 21 21 C 1.36946 * 119.99484 * 84.93338 * 20 18 17 22 22 H 1.07997 * 120.00087 * 0.02562 * 21 20 18 23 23 C 1.38805 * 119.99308 * 179.97438 * 21 20 18 24 24 N 1.31623 * 119.99372 * 179.97438 * 23 21 20 25 25 Si 1.86791 * 120.00770 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.47241 * 89.99529 * 25 23 21 27 27 H 1.48498 * 109.47806 * 210.00081 * 25 23 21 28 28 H 1.48507 * 109.47156 * 329.99832 * 25 23 21 29 29 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46897 * 300.00381 * 1 2 3 31 31 H 1.09001 * 109.46854 * 59.99814 * 1 2 3 32 32 H 1.09000 * 109.58701 * 305.17103 * 4 2 1 33 33 H 1.09005 * 109.58454 * 65.59138 * 4 2 1 34 34 H 1.09001 * 109.47077 * 299.99541 * 8 6 5 35 35 H 1.08999 * 109.47395 * 60.00261 * 8 6 5 36 36 H 1.09007 * 109.46993 * 300.00268 * 9 8 6 37 37 H 1.09004 * 109.46672 * 59.99544 * 9 8 6 38 38 H 1.08001 * 127.05053 * 0.02562 * 11 10 9 39 39 H 1.09003 * 109.46614 * 269.99706 * 14 13 12 40 40 H 1.08997 * 109.46692 * 29.99812 * 14 13 12 41 41 H 1.09000 * 109.46992 * 150.00302 * 14 13 12 42 42 H 1.09004 * 109.58885 * 66.17987 * 16 5 4 43 43 H 1.09000 * 109.58663 * 186.46129 * 16 5 4 44 44 H 1.09005 * 109.49580 * 174.58602 * 17 16 5 45 45 H 1.08994 * 109.49562 * 294.64929 * 17 16 5 46 46 H 0.96999 * 120.00270 * 264.93201 * 20 18 17 47 47 H 0.97003 * 119.99726 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7234 -1.2497 5 7 3.5047 -0.8282 -1.1701 6 6 4.2808 -0.3849 -2.1790 7 8 3.7723 0.1055 -3.1648 8 6 5.7803 -0.4999 -2.0825 9 6 6.4182 0.0719 -3.3503 10 6 7.9177 -0.0425 -3.2537 11 6 8.7746 -0.6651 -4.1641 12 7 9.9859 -0.5175 -3.6772 13 7 9.9085 0.1245 -2.5656 14 6 11.0560 0.4739 -1.7246 15 7 8.6864 0.4179 -2.2929 16 6 4.1059 -1.4256 0.0300 17 6 3.5715 -0.6942 1.2655 18 6 2.0414 -0.7230 1.2482 19 1 1.6588 -0.2247 2.1389 20 7 1.5796 -2.1132 1.2305 21 6 1.4500 -2.8065 2.4044 22 1 1.6879 -2.3284 3.3430 23 6 1.0119 -4.1235 2.3877 24 7 0.8879 -4.7901 3.5158 25 14 0.5998 -4.9504 0.7642 26 1 1.8152 -5.6087 0.2214 27 1 -0.4592 -5.9685 0.9819 28 1 0.1156 -3.9314 -0.2015 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6057 -1.7214 -1.2982 33 1 1.7633 -0.1576 -2.1389 34 1 6.1324 0.0580 -1.2148 35 1 6.0583 -1.5486 -1.9776 36 1 6.0660 -0.4863 -4.2178 37 1 6.1401 1.1206 -3.4557 38 1 8.4984 -1.1630 -5.0819 39 1 11.2400 -0.3281 -1.0097 40 1 11.9371 0.6115 -2.3512 41 1 10.8443 1.3982 -1.1870 42 1 3.8386 -2.4808 0.0860 43 1 5.1903 -1.3252 -0.0159 44 1 3.9345 -1.1888 2.1664 45 1 3.9166 0.3396 1.2538 46 1 1.3656 -2.5425 0.3875 47 1 0.5813 -5.7103 3.5042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036182705.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:43 Heat of formation + Delta-G solvation = 60.809184 kcal Electronic energy + Delta-G solvation = -27533.780214 eV Core-core repulsion = 23753.626829 eV Total energy + Delta-G solvation = -3780.153385 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.50000 -41.37253 -39.26217 -35.94768 -35.85191 -34.52834 -33.84383 -33.16662 -32.51220 -31.43994 -28.99669 -27.61710 -26.72381 -25.21291 -24.81581 -23.27953 -23.01351 -21.73356 -20.68829 -19.85180 -19.46421 -18.40669 -17.90023 -17.74605 -16.89904 -16.79180 -16.52522 -16.00262 -15.68663 -15.49243 -15.20079 -15.06728 -14.68966 -14.48845 -14.36789 -14.20542 -13.79453 -13.63112 -13.54837 -13.30122 -13.17615 -12.95751 -12.80930 -12.74253 -12.59463 -12.41962 -12.03395 -11.96321 -11.95080 -11.87928 -11.77648 -11.66970 -11.23940 -11.19452 -10.94937 -10.74514 -10.04901 -9.61067 -9.22729 -7.97884 -5.28633 0.82536 1.37624 1.38470 1.42700 1.45944 1.53470 1.64309 2.05085 2.49819 3.15232 3.34356 3.49386 3.63040 3.79952 3.84946 4.01245 4.04290 4.14316 4.19355 4.28605 4.32347 4.36197 4.37589 4.41945 4.53618 4.58755 4.61168 4.68816 4.72009 4.82487 4.84968 4.97514 5.01347 5.06271 5.13719 5.19377 5.19955 5.27627 5.29897 5.33225 5.44682 5.64035 5.79055 5.84851 6.26385 6.46649 7.13211 7.17022 7.35318 7.90225 8.08504 9.24097 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.015924 B = 0.002949 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.951624 B = 9493.197715 C =10062.978606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.101 4.101 3 H 0.090 0.910 4 C 0.119 3.881 5 N -0.606 5.606 6 C 0.516 3.484 7 O -0.579 6.579 8 C -0.124 4.124 9 C -0.004 4.004 10 C -0.004 4.004 11 C -0.027 4.027 12 N -0.311 5.311 13 N -0.164 5.164 14 C 0.096 3.904 15 N -0.303 5.303 16 C 0.117 3.883 17 C -0.143 4.143 18 C 0.176 3.824 19 H 0.048 0.952 20 N -0.742 5.742 21 C -0.211 4.211 22 H 0.061 0.939 23 C -0.061 4.061 24 N -0.985 5.985 25 Si 0.940 3.060 26 H -0.281 1.281 27 H -0.301 1.301 28 H -0.256 1.256 29 H 0.041 0.959 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.222 0.778 39 H 0.102 0.898 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.056 0.944 43 H 0.105 0.895 44 H 0.063 0.937 45 H 0.079 0.921 46 H 0.362 0.638 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.317 12.764 -14.072 25.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.121 4.121 3 H 0.108 0.892 4 C -0.004 4.004 5 N -0.338 5.338 6 C 0.306 3.694 7 O -0.460 6.460 8 C -0.165 4.165 9 C -0.044 4.044 10 C -0.166 4.166 11 C -0.208 4.208 12 N -0.153 5.153 13 N -0.065 5.065 14 C -0.042 4.042 15 N -0.147 5.147 16 C -0.006 4.006 17 C -0.183 4.183 18 C 0.068 3.932 19 H 0.066 0.934 20 N -0.386 5.386 21 C -0.342 4.342 22 H 0.079 0.921 23 C -0.252 4.252 24 N -0.637 5.637 25 Si 0.769 3.231 26 H -0.207 1.207 27 H -0.229 1.229 28 H -0.180 1.180 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.239 0.761 39 H 0.120 0.880 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.074 0.926 43 H 0.123 0.877 44 H 0.082 0.918 45 H 0.097 0.903 46 H 0.196 0.804 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 18.195 13.329 -13.554 26.314 hybrid contribution -1.239 -1.405 -0.749 2.017 sum 16.956 11.924 -14.302 25.185 Atomic orbital electron populations 1.21656 0.94008 1.01602 1.02133 1.21662 0.96654 0.99723 0.94012 0.89173 1.21543 0.79697 1.00139 0.99020 1.48205 1.06718 1.60165 1.18677 1.21035 0.90312 0.76420 0.81590 1.90652 1.76422 1.46738 1.32156 1.21599 0.89412 1.04553 1.00907 1.19544 0.83715 1.03044 0.98096 1.23295 0.98202 1.01944 0.93136 1.25159 0.87310 1.04592 1.03753 1.74025 1.26324 1.14624 1.00284 1.48394 1.06109 1.37242 1.14799 1.22515 0.83240 1.04390 0.94089 1.73962 0.92209 1.22178 1.26313 1.21700 0.98599 0.96968 0.83300 1.22363 0.97857 1.00619 0.97494 1.20419 0.92520 0.83996 0.96221 0.93406 1.42807 1.80703 1.10832 1.04255 1.18999 1.34524 0.93783 0.86905 0.92103 1.25313 1.03063 0.97762 0.99105 1.69863 1.55853 1.11065 1.26906 0.85640 0.77640 0.78617 0.81251 1.20738 1.22861 1.18049 0.94014 0.92228 0.91259 0.93123 0.89183 0.87531 0.87806 0.88130 0.89982 0.76133 0.87979 0.86413 0.86655 0.92600 0.87702 0.91809 0.90274 0.80363 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.06 71.98 0.65 -3.18 16 2 C -0.10 -2.86 2.67 -10.72 -0.03 -2.89 16 3 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 4 C 0.12 3.48 5.42 86.36 0.47 3.95 16 5 N -0.61 -16.55 2.97 -818.91 -2.43 -18.98 16 6 C 0.52 13.50 7.70 87.65 0.67 14.18 16 7 O -0.58 -18.33 15.40 -3.03 -0.05 -18.38 16 8 C -0.12 -2.43 4.02 29.85 0.12 -2.31 16 9 C 0.00 -0.08 5.10 29.85 0.15 0.07 16 10 C 0.00 -0.07 6.61 42.97 0.28 0.21 16 11 C -0.03 -0.48 12.15 85.11 1.03 0.55 16 12 N -0.31 -6.28 12.05 -56.86 -0.69 -6.97 16 13 N -0.16 -3.02 4.35 -206.55 -0.90 -3.92 16 14 C 0.10 0.80 11.57 127.77 1.48 2.28 16 15 N -0.30 -6.41 12.04 -47.26 -0.57 -6.98 16 16 C 0.12 3.14 6.08 86.36 0.53 3.67 16 17 C -0.14 -4.16 5.78 30.67 0.18 -3.99 16 18 C 0.18 6.01 2.53 45.02 0.11 6.12 16 19 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 20 N -0.74 -31.58 3.45 -322.81 -1.11 -32.69 16 21 C -0.21 -11.25 10.41 84.03 0.87 -10.37 16 22 H 0.06 3.57 8.06 -2.91 -0.02 3.54 16 23 C -0.06 -3.49 5.50 84.86 0.47 -3.03 16 24 N -0.99 -61.84 13.97 21.65 0.30 -61.54 16 25 Si 0.94 44.67 27.73 68.60 1.90 46.58 16 26 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 27 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 28 H -0.26 -11.05 6.52 99.48 0.65 -10.41 16 29 H 0.04 1.36 7.54 -2.39 -0.02 1.35 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 1.64 6.64 -2.39 -0.02 1.62 16 33 H 0.09 2.62 7.01 -2.38 -0.02 2.60 16 34 H 0.11 1.96 7.69 -2.39 -0.02 1.95 16 35 H 0.10 1.85 7.94 -2.39 -0.02 1.83 16 36 H 0.10 1.71 8.09 -2.38 -0.02 1.69 16 37 H 0.08 1.64 8.10 -2.38 -0.02 1.62 16 38 H 0.22 2.47 8.06 -2.91 -0.02 2.45 16 39 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.06 1.80 7.74 -2.38 -0.02 1.78 16 43 H 0.10 2.20 5.93 -2.39 -0.01 2.19 16 44 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 45 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.36 15.32 3.79 -92.71 -0.35 14.97 16 47 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -73.37 375.40 4.01 -69.36 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.56 Total: 28.26 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 6.99 Total: 5.27 kcal Atomic # 7 Polarization: -125.68 SS G_CDS: -5.40 Total: -131.08 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.05 Total: -18.38 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.90 Total: 46.58 kcal Total: -73.37 4.01 -69.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036182705.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.167 kcal (2) G-P(sol) polarization free energy of solvation -73.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds