Wall clock time and date at job start Fri Apr 10 2020 18:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46735 * 2 1 4 4 H 1.08994 * 109.52720 * 305.08257 * 3 2 1 5 5 C 1.53191 * 109.49922 * 65.16519 * 3 2 1 6 6 N 1.46928 * 108.77570 * 174.57923 * 5 3 2 7 7 C 1.34778 * 120.62689 * 126.36794 * 6 5 3 8 8 O 1.21285 * 120.00435 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.99841 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.47077 * 180.02562 * 9 7 6 11 11 N 1.46498 * 109.47256 * 179.97438 * 10 9 7 12 12 C 1.35319 * 125.86873 * 124.99986 * 11 10 9 13 13 C 1.35348 * 106.17528 * 180.02562 * 12 11 10 14 14 N 1.33772 * 106.49782 * 0.02562 * 13 12 11 15 15 N 1.28635 * 108.88593 * 359.73157 * 14 13 12 16 16 C 1.46926 * 118.74188 * 306.39608 * 6 5 3 17 17 C 1.53190 * 108.77633 * 53.60440 * 16 6 5 18 18 C 1.53040 * 109.31480 * 305.36629 * 17 16 6 19 19 H 1.09000 * 109.44982 * 301.35618 * 18 17 16 20 20 N 1.46492 * 109.46346 * 181.38918 * 18 17 16 21 21 C 1.36935 * 120.00376 * 84.93006 * 20 18 17 22 22 H 1.08003 * 119.99724 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00063 * 180.02562 * 21 20 18 24 24 N 1.31622 * 119.99887 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00212 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.47297 * 89.99941 * 25 23 21 27 27 H 1.48503 * 109.47261 * 330.00122 * 25 23 21 28 28 H 1.48500 * 109.47454 * 210.00115 * 25 23 21 29 29 H 1.09007 * 109.46827 * 299.99641 * 1 2 3 30 30 H 1.08999 * 109.47106 * 59.99505 * 1 2 3 31 31 H 1.08995 * 109.47195 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.46725 * 240.00495 * 2 1 3 33 33 H 1.09004 * 109.47180 * 120.00017 * 2 1 3 34 34 H 1.08993 * 109.58510 * 294.37075 * 5 3 2 35 35 H 1.09001 * 109.58698 * 54.65474 * 5 3 2 36 36 H 1.09000 * 109.47210 * 299.99477 * 9 7 6 37 37 H 1.08999 * 109.47561 * 60.00093 * 9 7 6 38 38 H 1.08998 * 109.47333 * 299.99930 * 10 9 7 39 39 H 1.09008 * 109.47385 * 59.99892 * 10 9 7 40 40 H 1.07997 * 126.91239 * 359.97438 * 12 11 10 41 41 H 1.08006 * 126.75231 * 179.97438 * 13 12 11 42 42 H 1.09001 * 109.58740 * 173.39201 * 16 6 5 43 43 H 1.09006 * 109.58199 * 293.67407 * 16 6 5 44 44 H 1.09001 * 109.49566 * 185.41415 * 17 16 6 45 45 H 1.08998 * 109.49566 * 65.31927 * 17 16 6 46 46 H 0.97009 * 119.99477 * 264.93591 * 20 18 17 47 47 H 0.97006 * 119.99732 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9828 -0.8406 5 6 1.6385 2.1268 1.3105 6 7 2.2452 3.4644 1.3508 7 6 1.4857 4.5565 1.5673 8 8 0.2897 4.4406 1.7317 9 6 2.1227 5.9217 1.6052 10 6 1.0477 6.9789 1.8654 11 7 1.6670 8.3061 1.9028 12 6 1.3095 9.3695 1.1462 13 6 2.1366 10.3802 1.5015 14 7 2.9493 9.8920 2.4452 15 7 2.6419 8.6623 2.6641 16 6 3.6953 3.5888 1.1498 17 6 4.0737 2.8882 -0.1589 18 6 3.5653 1.4451 -0.1258 19 1 4.0009 0.9263 0.7281 20 7 3.9542 0.7621 -1.3620 21 6 5.1923 0.1863 -1.4659 22 1 5.8819 0.2354 -0.6362 23 6 5.5609 -0.4604 -2.6375 24 7 6.7508 -1.0142 -2.7371 25 14 4.3679 -0.5459 -4.0723 26 1 4.5678 0.6328 -4.9533 27 1 2.9747 -0.5490 -3.5582 28 1 4.6126 -1.7895 -4.8462 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5533 2.2161 1.3586 35 1 1.9944 1.5364 2.1549 36 1 2.8646 5.9545 2.4031 37 1 2.6073 6.1233 0.6499 38 1 0.3055 6.9464 1.0679 39 1 0.5634 6.7773 2.8209 40 1 0.5230 9.4044 0.4069 41 1 2.1404 11.3833 1.1011 42 1 3.9671 4.6428 1.0918 43 1 4.2210 3.1211 1.9824 44 1 5.1578 2.8895 -0.2720 45 1 3.6192 3.4149 -0.9980 46 1 3.3346 0.7177 -2.1072 47 1 7.0086 -1.4658 -3.5560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037828870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:59 Heat of formation + Delta-G solvation = 49.588267 kcal Electronic energy + Delta-G solvation = -27448.656853 eV Core-core repulsion = 23668.016893 eV Total energy + Delta-G solvation = -3780.639961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.16783 -41.44837 -39.35540 -36.38061 -36.21672 -35.36243 -33.62721 -32.30283 -31.90045 -31.50847 -30.07972 -27.27921 -25.88905 -25.03787 -24.08739 -23.56178 -22.40468 -22.18021 -21.32003 -20.20877 -19.46922 -18.90683 -17.65005 -17.51651 -17.06240 -16.71465 -16.64320 -16.03512 -15.80666 -15.44759 -15.25976 -14.97040 -14.83042 -14.70232 -14.57386 -14.30614 -13.98143 -13.81574 -13.67756 -13.30049 -13.06465 -12.89474 -12.82492 -12.68579 -12.57121 -12.42603 -12.18040 -12.03382 -11.86118 -11.84552 -11.64267 -11.56194 -11.19395 -11.14266 -10.98339 -10.82258 -10.30808 -9.72412 -9.27435 -8.00524 -5.32513 0.67617 1.33774 1.37147 1.38965 1.46522 1.49604 1.65948 2.01006 2.48686 3.31031 3.38725 3.39923 3.53728 3.63794 3.73659 3.78919 3.95844 3.99482 4.16872 4.23315 4.27036 4.29725 4.35778 4.41740 4.44426 4.46773 4.60819 4.63417 4.67676 4.78256 4.80519 4.86203 4.88924 4.99034 5.02445 5.15112 5.25972 5.30596 5.32417 5.44139 5.47719 5.61917 5.65729 5.79916 6.23683 6.33052 7.01943 7.09995 7.54664 7.86896 8.04813 9.21105 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.015595 B = 0.002897 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.029309 B = 9661.397363 C =10671.468396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C -0.095 4.095 4 H 0.065 0.935 5 C 0.125 3.875 6 N -0.604 5.604 7 C 0.526 3.474 8 O -0.574 6.574 9 C -0.147 4.147 10 C 0.133 3.867 11 N -0.290 5.290 12 C -0.034 4.034 13 C -0.066 4.066 14 N -0.313 5.313 15 N -0.124 5.124 16 C 0.113 3.887 17 C -0.145 4.145 18 C 0.181 3.819 19 H 0.046 0.954 20 N -0.747 5.747 21 C -0.217 4.217 22 H 0.060 0.940 23 C -0.064 4.064 24 N -0.985 5.985 25 Si 0.947 3.053 26 H -0.282 1.282 27 H -0.252 1.252 28 H -0.301 1.301 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.135 0.865 39 H 0.107 0.893 40 H 0.232 0.768 41 H 0.216 0.784 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.363 0.637 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.782 17.632 8.007 25.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C -0.115 4.115 4 H 0.084 0.916 5 C 0.002 3.998 6 N -0.336 5.336 7 C 0.315 3.685 8 O -0.454 6.454 9 C -0.187 4.187 10 C 0.013 3.987 11 N -0.084 5.084 12 C -0.185 4.185 13 C -0.224 4.224 14 N -0.179 5.179 15 N -0.103 5.103 16 C -0.010 4.010 17 C -0.185 4.185 18 C 0.073 3.927 19 H 0.064 0.936 20 N -0.389 5.389 21 C -0.348 4.348 22 H 0.078 0.922 23 C -0.255 4.255 24 N -0.636 5.636 25 Si 0.776 3.224 26 H -0.209 1.209 27 H -0.177 1.177 28 H -0.228 1.228 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.153 0.847 39 H 0.125 0.875 40 H 0.249 0.751 41 H 0.233 0.767 42 H 0.124 0.876 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.196 0.804 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.206 17.009 9.283 25.261 hybrid contribution -0.561 -0.356 -2.097 2.200 sum -16.766 16.653 7.185 24.700 Atomic orbital electron populations 1.21790 0.94534 1.02018 1.02039 1.21429 0.96371 0.95224 1.02116 1.21683 0.95088 0.96700 0.98068 0.91633 1.21655 0.99696 0.81731 0.96718 1.48175 1.08892 1.06697 1.69796 1.20462 0.86330 0.86257 0.75477 1.90699 1.15749 1.87101 1.51880 1.21843 0.99750 0.90401 1.06737 1.21938 0.94601 0.74887 1.07294 1.47716 1.23079 1.12461 1.25138 1.24444 1.05475 0.86571 1.01991 1.24252 0.95904 1.03150 0.99056 1.75079 1.23896 1.01947 1.16955 1.78257 1.05686 1.09492 1.16872 1.21886 0.78878 1.02684 0.97521 1.22456 1.01361 0.97435 0.97278 1.20413 0.92793 0.91288 0.88233 0.93614 1.42772 1.14766 1.66543 1.14811 1.18990 0.91305 1.25606 0.98946 0.92215 1.25404 0.98186 1.01100 1.00812 1.69875 1.21756 1.43769 1.28220 0.85519 0.80129 0.76698 0.80063 1.20891 1.17652 1.22800 0.91623 0.93058 0.92243 0.93267 0.91817 0.88684 0.90432 0.86654 0.86784 0.84659 0.87482 0.75125 0.76694 0.87638 0.90011 0.91943 0.92342 0.80427 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.68 71.98 0.70 -2.49 16 2 C -0.11 -3.07 5.31 30.60 0.16 -2.91 16 3 C -0.10 -2.56 1.92 -10.71 -0.02 -2.58 16 4 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 5 C 0.12 2.80 5.33 86.36 0.46 3.26 16 6 N -0.60 -12.50 2.97 -818.90 -2.43 -14.94 16 7 C 0.53 10.29 7.70 87.66 0.67 10.96 16 8 O -0.57 -14.14 15.40 -3.05 -0.05 -14.18 16 9 C -0.15 -2.02 4.18 29.85 0.12 -1.90 16 10 C 0.13 1.62 5.74 86.38 0.50 2.11 16 11 N -0.29 -4.52 3.44 -347.73 -1.20 -5.71 16 12 C -0.03 -0.37 11.57 83.49 0.97 0.60 16 13 C -0.07 -0.98 12.05 83.73 1.01 0.03 16 14 N -0.31 -7.41 12.41 -58.25 -0.72 -8.13 16 15 N -0.12 -2.82 12.92 37.02 0.48 -2.35 16 16 C 0.11 2.25 6.34 86.36 0.55 2.80 16 17 C -0.14 -4.08 5.66 30.67 0.17 -3.91 16 18 C 0.18 5.98 2.19 45.02 0.10 6.08 16 19 H 0.05 1.63 8.08 -2.39 -0.02 1.61 16 20 N -0.75 -31.99 4.13 -322.82 -1.33 -33.32 16 21 C -0.22 -11.67 10.41 84.03 0.87 -10.79 16 22 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 23 C -0.06 -3.64 5.50 84.86 0.47 -3.18 16 24 N -0.99 -61.91 13.97 21.65 0.30 -61.60 16 25 Si 0.95 44.44 27.73 68.60 1.90 46.34 16 26 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 27 H -0.25 -10.61 6.52 99.48 0.65 -9.96 16 28 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 29 H 0.06 1.26 6.70 -2.38 -0.02 1.24 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.62 7.22 -2.39 -0.02 1.61 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.09 2.17 5.73 -2.39 -0.01 2.15 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.12 1.59 7.92 -2.39 -0.02 1.57 16 37 H 0.11 1.39 7.69 -2.39 -0.02 1.37 16 38 H 0.14 1.11 8.03 -2.39 -0.02 1.09 16 39 H 0.11 1.38 8.10 -2.38 -0.02 1.36 16 40 H 0.23 0.36 8.06 -2.91 -0.02 0.33 16 41 H 0.22 1.63 8.06 -2.91 -0.02 1.61 16 42 H 0.11 1.60 5.93 -2.39 -0.01 1.59 16 43 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 44 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.36 15.32 5.37 -92.70 -0.50 14.82 16 47 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -74.93 375.67 4.09 -70.84 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.41 Total: 24.98 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 6.73 Total: -1.91 kcal Atomic # 7 Polarization: -121.15 SS G_CDS: -4.91 Total: -126.06 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.05 Total: -14.18 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.90 Total: 46.34 kcal Total: -74.93 4.09 -70.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037828870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.425 kcal (2) G-P(sol) polarization free energy of solvation -74.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds