Wall clock time and date at job start Fri Apr 10 2020 18:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46980 * 2 1 4 4 H 1.08996 * 109.52192 * 305.07939 * 3 2 1 5 5 C 1.53191 * 109.49770 * 65.15972 * 3 2 1 6 6 N 1.47209 * 108.84981 * 174.60101 * 5 3 2 7 7 C 1.34778 * 120.81295 * 126.33714 * 6 5 3 8 8 O 1.21626 * 119.99839 * 353.59445 * 7 6 5 9 9 C 1.47228 * 120.00264 * 173.58739 * 7 6 5 10 10 C 1.37006 * 127.19192 * 332.79074 * 9 7 6 11 11 N 1.33319 * 106.37236 * 179.97438 * 10 9 7 12 12 N 1.28512 * 109.44165 * 0.02562 * 11 10 9 13 13 N 1.28717 * 110.63480 * 359.75033 * 12 11 10 14 14 C 1.46497 * 126.03391 * 180.26460 * 13 12 11 15 15 C 1.53002 * 109.47495 * 274.85449 * 14 13 12 16 16 C 1.46925 * 118.55867 * 306.48004 * 6 5 3 17 17 C 1.53187 * 108.89402 * 53.53978 * 16 6 5 18 18 C 1.53037 * 109.31281 * 305.29546 * 17 16 6 19 19 H 1.09006 * 109.45977 * 301.34608 * 18 17 16 20 20 N 1.46507 * 109.46165 * 181.37343 * 18 17 16 21 21 C 1.36937 * 120.00090 * 84.99971 * 20 18 17 22 22 H 1.08004 * 119.99655 * 359.97438 * 21 20 18 23 23 C 1.38809 * 119.99743 * 180.02562 * 21 20 18 24 24 N 1.31621 * 119.99675 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00101 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47326 * 90.00269 * 25 23 21 27 27 H 1.48503 * 109.46978 * 210.00068 * 25 23 21 28 28 H 1.48492 * 109.47393 * 329.99924 * 25 23 21 29 29 H 1.09006 * 109.47372 * 300.00267 * 1 2 3 30 30 H 1.08998 * 109.47507 * 60.00459 * 1 2 3 31 31 H 1.09003 * 109.47373 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47068 * 239.99493 * 2 1 3 33 33 H 1.09008 * 109.47096 * 119.99905 * 2 1 3 34 34 H 1.08991 * 109.58812 * 294.37475 * 5 3 2 35 35 H 1.08994 * 109.58566 * 54.65940 * 5 3 2 36 36 H 1.08001 * 126.81098 * 359.92639 * 10 9 7 37 37 H 1.09003 * 109.47216 * 34.85222 * 14 13 12 38 38 H 1.09000 * 109.47477 * 154.85271 * 14 13 12 39 39 H 1.08999 * 109.47140 * 293.58106 * 15 14 13 40 40 H 1.09002 * 109.47001 * 53.57055 * 15 14 13 41 41 H 1.08994 * 109.47197 * 173.57487 * 15 14 13 42 42 H 1.09002 * 109.58311 * 293.67659 * 16 6 5 43 43 H 1.08997 * 109.58770 * 173.39887 * 16 6 5 44 44 H 1.08996 * 109.49623 * 65.24454 * 17 16 6 45 45 H 1.09003 * 109.50009 * 185.34606 * 17 16 6 46 46 H 0.97001 * 119.99964 * 264.99890 * 20 18 17 47 47 H 0.97002 * 119.99728 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9827 -0.8407 5 6 1.6384 2.1268 1.3105 6 7 2.2450 3.4674 1.3523 7 6 1.4880 4.5613 1.5687 8 8 0.2766 4.4628 1.6162 9 6 2.1273 5.8754 1.7478 10 6 3.3855 6.1256 2.2287 11 7 3.5367 7.4501 2.2146 12 7 2.4653 7.9982 1.7635 13 7 1.5898 7.1035 1.4636 14 6 0.2538 7.3542 0.9173 15 6 -0.7212 7.6347 2.0626 16 6 3.6952 3.5888 1.1497 17 6 4.0736 2.8882 -0.1589 18 6 3.5652 1.4451 -0.1257 19 1 4.0008 0.9261 0.7282 20 7 3.9539 0.7621 -1.3622 21 6 5.1915 0.1851 -1.4657 22 1 5.8811 0.2340 -0.6360 23 6 5.5599 -0.4615 -2.6374 24 7 6.7496 -1.0157 -2.7371 25 14 4.3673 -0.5453 -4.0727 26 1 4.5687 0.6334 -4.9532 27 1 4.6111 -1.7889 -4.8469 28 1 2.9740 -0.5472 -3.5591 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 0.5532 2.2161 1.3585 35 1 1.9942 1.5365 2.1548 36 1 4.1107 5.3949 2.5552 37 1 0.2895 8.2163 0.2512 38 1 -0.0814 6.4788 0.3610 39 1 -0.8439 6.7340 2.6641 40 1 -0.3276 8.4373 2.6864 41 1 -1.6864 7.9327 1.6533 42 1 4.2208 3.1191 1.9811 43 1 3.9692 4.6422 1.0926 44 1 3.6192 3.4147 -0.9981 45 1 5.1577 2.8894 -0.2720 46 1 3.3346 0.7185 -2.1075 47 1 7.0072 -1.4672 -3.5560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037847470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:15 Heat of formation + Delta-G solvation = 80.493625 kcal Electronic energy + Delta-G solvation = -28350.680678 eV Core-core repulsion = 24571.380874 eV Total energy + Delta-G solvation = -3779.299804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.56322 -40.24417 -38.06246 -35.87177 -34.97657 -34.02458 -31.96170 -31.71621 -31.08105 -30.03233 -28.91600 -25.97408 -24.81846 -24.22066 -23.67451 -22.43598 -22.06199 -20.95217 -20.14269 -19.53185 -17.83454 -17.43621 -17.25313 -16.75759 -16.20915 -15.38651 -15.20098 -14.82777 -14.49843 -14.33178 -14.20417 -13.85041 -13.53396 -13.47167 -13.32901 -13.03898 -12.84378 -12.60150 -12.45584 -12.39027 -12.00015 -11.86082 -11.80306 -11.52354 -11.27447 -11.10766 -11.08339 -10.88331 -10.56788 -10.44772 -10.40061 -10.28424 -10.23059 -9.85013 -9.64108 -9.59674 -8.99490 -8.76339 -7.34276 -5.83637 -3.19624 0.75918 1.79098 2.09754 2.68923 2.84128 3.31468 3.34688 3.40786 3.97267 4.11522 4.42572 4.49027 4.52701 4.68119 4.77814 4.80667 4.91642 5.02424 5.05220 5.13670 5.17353 5.22791 5.37314 5.42663 5.46469 5.48921 5.52225 5.65163 5.68972 5.71756 5.80476 5.89463 5.93457 5.98229 6.11273 6.15474 6.16725 6.24480 6.31319 6.43494 6.62423 6.69029 6.84601 7.13191 7.77363 7.91366 8.13888 8.35327 9.13087 9.85833 10.05136 11.34530 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.003570 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.914742 B = 7840.872556 C = 8666.115637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.070 0.930 5 C 0.122 3.878 6 N -0.587 5.587 7 C 0.593 3.407 8 O -0.540 6.540 9 C -0.062 4.062 10 C -0.005 4.005 11 N -0.273 5.273 12 N -0.062 5.062 13 N -0.255 5.255 14 C 0.109 3.891 15 C -0.165 4.165 16 C 0.085 3.915 17 C -0.151 4.151 18 C 0.188 3.812 19 H 0.059 0.941 20 N -0.744 5.744 21 C -0.244 4.244 22 H 0.091 0.909 23 C 0.007 3.993 24 N -0.932 5.932 25 Si 0.881 3.119 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.277 1.277 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.205 0.795 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.058 0.942 45 H 0.085 0.915 46 H 0.361 0.639 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.334 12.602 9.944 21.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.128 4.128 4 H 0.088 0.912 5 C 0.001 3.999 6 N -0.318 5.318 7 C 0.378 3.622 8 O -0.418 6.418 9 C -0.197 4.197 10 C -0.165 4.165 11 N -0.135 5.135 12 N -0.042 5.042 13 N -0.052 5.052 14 C -0.011 4.011 15 C -0.223 4.223 16 C -0.038 4.038 17 C -0.192 4.192 18 C 0.078 3.922 19 H 0.077 0.923 20 N -0.386 5.386 21 C -0.374 4.374 22 H 0.109 0.891 23 C -0.189 4.189 24 N -0.580 5.580 25 Si 0.712 3.288 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.203 1.203 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.221 0.779 37 H 0.125 0.875 38 H 0.131 0.869 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.077 0.923 45 H 0.104 0.896 46 H 0.194 0.806 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.446 13.950 10.020 22.443 hybrid contribution -0.889 -1.213 -1.324 2.004 sum -15.335 12.736 8.696 21.748 Atomic orbital electron populations 1.21856 0.96600 1.01271 1.01393 1.21469 0.94554 0.95503 1.03627 1.21838 0.97802 0.96394 0.96814 0.91186 1.21888 0.99574 0.80302 0.98175 1.47939 1.09009 1.06195 1.68691 1.16709 0.86003 0.82019 0.77439 1.90796 1.13030 1.85748 1.52183 1.21984 0.96631 0.88833 1.12205 1.24163 0.95060 0.94317 1.02963 1.74924 1.15465 1.06985 1.16175 1.78238 0.94638 1.16746 1.14621 1.47877 1.14273 1.03421 1.39658 1.22285 0.75952 1.05158 0.97688 1.22106 0.98736 1.03407 0.98063 1.22487 0.78834 1.02637 0.99861 1.22651 1.02956 0.98669 0.94912 1.20180 0.90544 0.90670 0.90831 0.92298 1.42767 1.16558 1.66251 1.13038 1.19041 0.90411 1.27442 1.00487 0.89123 1.24654 0.96380 1.00200 0.97661 1.69694 1.19290 1.41465 1.27510 0.86608 0.81110 0.77363 0.83742 1.21193 1.21760 1.20300 0.92957 0.93090 0.92974 0.90288 0.91797 0.88770 0.90714 0.77859 0.87518 0.86933 0.90787 0.91551 0.89639 0.90362 0.89017 0.92312 0.89642 0.80614 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.67 37.16 0.36 -1.44 16 2 C -0.11 -1.57 5.31 -26.73 -0.14 -1.71 16 3 C -0.11 -1.51 1.92 -90.50 -0.17 -1.68 16 4 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 5 C 0.12 1.46 5.35 -3.56 -0.02 1.45 16 6 N -0.59 -7.00 2.98 -173.89 -0.52 -7.52 16 7 C 0.59 7.53 7.46 -12.61 -0.09 7.43 16 8 O -0.54 -7.73 15.03 5.25 0.08 -7.65 16 9 C -0.06 -0.75 6.46 -82.34 -0.53 -1.28 16 10 C -0.01 -0.06 9.66 -17.35 -0.17 -0.23 16 11 N -0.27 -3.68 12.35 30.47 0.38 -3.31 16 12 N -0.06 -0.82 13.14 60.35 0.79 -0.02 16 13 N -0.26 -2.96 3.39 -57.37 -0.19 -3.16 16 14 C 0.11 0.93 6.62 -4.04 -0.03 0.90 16 15 C -0.16 -1.22 10.24 37.16 0.38 -0.84 16 16 C 0.08 0.95 5.23 -3.71 -0.02 0.93 16 17 C -0.15 -2.23 5.66 -26.62 -0.15 -2.38 16 18 C 0.19 3.11 2.19 -67.89 -0.15 2.96 16 19 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 20 N -0.74 -15.91 4.13 -53.38 -0.22 -16.13 16 21 C -0.24 -6.38 10.41 -15.06 -0.16 -6.53 16 22 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 23 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 24 N -0.93 -28.25 13.97 55.49 0.78 -27.47 16 25 Si 0.88 21.30 27.73 -169.99 -4.71 16.58 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 29 H 0.05 0.55 6.70 -51.93 -0.35 0.20 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.31 7.22 -51.93 -0.37 0.94 16 33 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 34 H 0.09 1.15 5.74 -51.93 -0.30 0.85 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.20 1.74 6.32 -52.49 -0.33 1.41 16 37 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.11 0.99 6.97 -51.93 -0.36 0.63 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 0.95 4.10 -51.93 -0.21 0.74 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.36 7.79 5.38 -40.82 -0.22 7.57 16 47 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 369.73 15.07 5.57 5.57 Total: -1.00 -31.93 369.73 -6.27 -38.20 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -7.23 Total: 7.22 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -0.99 Total: -2.31 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 1.01 Total: -57.61 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: 0.08 Total: -7.65 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.71 Total: 16.58 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.93 -6.27 -38.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037847470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.694 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds