Wall clock time and date at job start Fri Apr 10 2020 18:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46980 * 2 1 4 4 H 1.08996 * 109.52192 * 305.07939 * 3 2 1 5 5 C 1.53191 * 109.49770 * 65.15972 * 3 2 1 6 6 N 1.47209 * 108.84981 * 174.60101 * 5 3 2 7 7 C 1.34778 * 120.81295 * 126.33714 * 6 5 3 8 8 O 1.21626 * 119.99839 * 353.59445 * 7 6 5 9 9 C 1.47228 * 120.00264 * 173.58739 * 7 6 5 10 10 C 1.37006 * 127.19192 * 332.79074 * 9 7 6 11 11 N 1.33319 * 106.37236 * 179.97438 * 10 9 7 12 12 N 1.28512 * 109.44165 * 0.02562 * 11 10 9 13 13 N 1.28717 * 110.63480 * 359.75033 * 12 11 10 14 14 C 1.46497 * 126.03391 * 180.26460 * 13 12 11 15 15 C 1.53002 * 109.47495 * 274.85449 * 14 13 12 16 16 C 1.46925 * 118.55867 * 306.48004 * 6 5 3 17 17 C 1.53187 * 108.89402 * 53.53978 * 16 6 5 18 18 C 1.53037 * 109.31281 * 305.29546 * 17 16 6 19 19 H 1.09006 * 109.45977 * 301.34608 * 18 17 16 20 20 N 1.46507 * 109.46165 * 181.37343 * 18 17 16 21 21 C 1.36937 * 120.00090 * 84.99971 * 20 18 17 22 22 H 1.08004 * 119.99655 * 359.97438 * 21 20 18 23 23 C 1.38809 * 119.99743 * 180.02562 * 21 20 18 24 24 N 1.31621 * 119.99675 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00101 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47326 * 90.00269 * 25 23 21 27 27 H 1.48503 * 109.46978 * 210.00068 * 25 23 21 28 28 H 1.48492 * 109.47393 * 329.99924 * 25 23 21 29 29 H 1.09006 * 109.47372 * 300.00267 * 1 2 3 30 30 H 1.08998 * 109.47507 * 60.00459 * 1 2 3 31 31 H 1.09003 * 109.47373 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47068 * 239.99493 * 2 1 3 33 33 H 1.09008 * 109.47096 * 119.99905 * 2 1 3 34 34 H 1.08991 * 109.58812 * 294.37475 * 5 3 2 35 35 H 1.08994 * 109.58566 * 54.65940 * 5 3 2 36 36 H 1.08001 * 126.81098 * 359.92639 * 10 9 7 37 37 H 1.09003 * 109.47216 * 34.85222 * 14 13 12 38 38 H 1.09000 * 109.47477 * 154.85271 * 14 13 12 39 39 H 1.08999 * 109.47140 * 293.58106 * 15 14 13 40 40 H 1.09002 * 109.47001 * 53.57055 * 15 14 13 41 41 H 1.08994 * 109.47197 * 173.57487 * 15 14 13 42 42 H 1.09002 * 109.58311 * 293.67659 * 16 6 5 43 43 H 1.08997 * 109.58770 * 173.39887 * 16 6 5 44 44 H 1.08996 * 109.49623 * 65.24454 * 17 16 6 45 45 H 1.09003 * 109.50009 * 185.34606 * 17 16 6 46 46 H 0.97001 * 119.99964 * 264.99890 * 20 18 17 47 47 H 0.97002 * 119.99728 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9827 -0.8407 5 6 1.6384 2.1268 1.3105 6 7 2.2450 3.4674 1.3523 7 6 1.4880 4.5613 1.5687 8 8 0.2766 4.4628 1.6162 9 6 2.1273 5.8754 1.7478 10 6 3.3855 6.1256 2.2287 11 7 3.5367 7.4501 2.2146 12 7 2.4653 7.9982 1.7635 13 7 1.5898 7.1035 1.4636 14 6 0.2538 7.3542 0.9173 15 6 -0.7212 7.6347 2.0626 16 6 3.6952 3.5888 1.1497 17 6 4.0736 2.8882 -0.1589 18 6 3.5652 1.4451 -0.1257 19 1 4.0008 0.9261 0.7282 20 7 3.9539 0.7621 -1.3622 21 6 5.1915 0.1851 -1.4657 22 1 5.8811 0.2340 -0.6360 23 6 5.5599 -0.4615 -2.6374 24 7 6.7496 -1.0157 -2.7371 25 14 4.3673 -0.5453 -4.0727 26 1 4.5687 0.6334 -4.9532 27 1 4.6111 -1.7889 -4.8469 28 1 2.9740 -0.5472 -3.5591 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 0.5532 2.2161 1.3585 35 1 1.9942 1.5365 2.1548 36 1 4.1107 5.3949 2.5552 37 1 0.2895 8.2163 0.2512 38 1 -0.0814 6.4788 0.3610 39 1 -0.8439 6.7340 2.6641 40 1 -0.3276 8.4373 2.6864 41 1 -1.6864 7.9327 1.6533 42 1 4.2208 3.1191 1.9811 43 1 3.9692 4.6422 1.0926 44 1 3.6192 3.4147 -0.9981 45 1 5.1577 2.8894 -0.2720 46 1 3.3346 0.7185 -2.1075 47 1 7.0072 -1.4672 -3.5560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037847470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:14 Heat of formation + Delta-G solvation = 59.287549 kcal Electronic energy + Delta-G solvation = -28351.600243 eV Core-core repulsion = 24571.380874 eV Total energy + Delta-G solvation = -3780.219368 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.47069 -41.29552 -39.23625 -36.80244 -36.12963 -35.42444 -33.62426 -32.74284 -31.84680 -31.53024 -29.99680 -27.20069 -25.72744 -25.24734 -24.95398 -23.69549 -23.03841 -22.19918 -21.32196 -20.58130 -19.53028 -18.53632 -18.19383 -17.67997 -17.19597 -16.75907 -16.30411 -16.07653 -15.74997 -15.42901 -15.22965 -15.00785 -14.71355 -14.59083 -14.54462 -14.09959 -13.98724 -13.96523 -13.46689 -13.20625 -13.14838 -13.03828 -12.88503 -12.63276 -12.59429 -12.52036 -12.17340 -12.08321 -12.02585 -11.84058 -11.63478 -11.53656 -11.32173 -11.27545 -11.12356 -10.90024 -10.50641 -9.79950 -9.24760 -7.98501 -5.29994 -0.15479 0.95464 1.16849 1.38178 1.39626 1.47109 1.75452 1.89506 2.50231 3.05202 3.32082 3.33775 3.54911 3.62659 3.72639 3.81802 3.87659 3.95998 4.00418 4.17561 4.18633 4.28491 4.31506 4.41661 4.46650 4.61680 4.63780 4.68329 4.75637 4.77834 4.81014 4.86698 4.91734 4.99757 5.01669 5.10530 5.16440 5.27069 5.32405 5.34177 5.44533 5.49731 5.62039 5.82894 6.14246 6.25939 6.79232 7.12249 7.21479 7.89485 8.06643 9.23075 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.003570 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.914742 B = 7840.872556 C = 8666.115637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C -0.097 4.097 4 H 0.062 0.938 5 C 0.128 3.872 6 N -0.585 5.585 7 C 0.598 3.402 8 O -0.556 6.556 9 C -0.074 4.074 10 C 0.001 3.999 11 N -0.299 5.299 12 N -0.076 5.076 13 N -0.250 5.250 14 C 0.100 3.900 15 C -0.157 4.157 16 C 0.094 3.906 17 C -0.144 4.144 18 C 0.181 3.819 19 H 0.055 0.945 20 N -0.747 5.747 21 C -0.215 4.215 22 H 0.064 0.936 23 C -0.063 4.063 24 N -0.984 5.984 25 Si 0.944 3.056 26 H -0.285 1.285 27 H -0.301 1.301 28 H -0.252 1.252 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.230 0.770 37 H 0.129 0.871 38 H 0.110 0.890 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.049 0.951 45 H 0.067 0.933 46 H 0.362 0.638 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.589 13.670 10.824 24.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C -0.117 4.117 4 H 0.080 0.920 5 C 0.006 3.994 6 N -0.316 5.316 7 C 0.384 3.616 8 O -0.435 6.435 9 C -0.209 4.209 10 C -0.159 4.159 11 N -0.161 5.161 12 N -0.056 5.056 13 N -0.048 5.048 14 C -0.019 4.019 15 C -0.215 4.215 16 C -0.029 4.029 17 C -0.184 4.184 18 C 0.073 3.927 19 H 0.073 0.927 20 N -0.389 5.389 21 C -0.346 4.346 22 H 0.082 0.918 23 C -0.254 4.254 24 N -0.636 5.636 25 Si 0.773 3.227 26 H -0.212 1.212 27 H -0.228 1.228 28 H -0.177 1.177 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.246 0.754 37 H 0.147 0.853 38 H 0.128 0.872 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.130 0.870 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.068 0.932 45 H 0.086 0.914 46 H 0.195 0.805 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.755 15.068 10.938 25.048 hybrid contribution -0.206 -1.502 -1.508 2.139 sum -16.961 13.566 9.430 23.678 Atomic orbital electron populations 1.21800 0.94635 1.02024 1.02029 1.21422 0.96265 0.94956 1.02388 1.21696 0.95273 0.96829 0.97899 0.91965 1.21858 0.99890 0.80263 0.97357 1.47921 1.09099 1.06087 1.68458 1.16712 0.85728 0.82171 0.77033 1.90791 1.13741 1.85957 1.52982 1.22015 0.97011 0.88819 1.13041 1.24605 0.95259 0.94090 1.01935 1.74905 1.15987 1.08012 1.17159 1.78195 0.95002 1.17213 1.15214 1.48183 1.14812 1.03112 1.38721 1.22602 0.74879 1.06007 0.98393 1.22064 0.99679 1.02318 0.97444 1.22466 0.78702 1.03195 0.98516 1.22456 1.01620 0.97506 0.96845 1.20446 0.92696 0.91062 0.88517 0.92654 1.42799 1.14868 1.66444 1.14828 1.19020 0.91325 1.25303 0.98992 0.91791 1.25362 0.98076 1.01258 1.00693 1.69864 1.21693 1.43858 1.28160 0.85573 0.80290 0.76584 0.80294 1.21224 1.22797 1.17654 0.91423 0.93315 0.92235 0.93293 0.91274 0.88357 0.88876 0.75357 0.85310 0.87186 0.92636 0.91909 0.87041 0.87934 0.87693 0.93235 0.91419 0.80550 0.93625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.67 71.98 0.70 -2.37 16 2 C -0.11 -2.89 5.31 30.59 0.16 -2.73 16 3 C -0.10 -2.50 1.92 -10.72 -0.02 -2.53 16 4 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 5 C 0.13 2.68 5.35 86.31 0.46 3.14 16 6 N -0.58 -12.30 2.98 -822.31 -2.45 -14.75 16 7 C 0.60 13.71 7.46 86.61 0.65 14.35 16 8 O -0.56 -14.66 15.03 -4.11 -0.06 -14.72 16 9 C -0.07 -1.63 6.46 40.40 0.26 -1.37 16 10 C 0.00 0.03 9.66 84.18 0.81 0.84 16 11 N -0.30 -7.62 12.35 -57.50 -0.71 -8.33 16 12 N -0.08 -1.89 13.14 37.02 0.49 -1.41 16 13 N -0.25 -5.38 3.39 -335.43 -1.14 -6.52 16 14 C 0.10 1.51 6.62 86.38 0.57 2.08 16 15 C -0.16 -2.02 10.24 71.98 0.74 -1.28 16 16 C 0.09 1.85 5.23 86.36 0.45 2.31 16 17 C -0.14 -4.05 5.66 30.67 0.17 -3.88 16 18 C 0.18 5.78 2.19 45.02 0.10 5.87 16 19 H 0.06 1.83 8.08 -2.38 -0.02 1.81 16 20 N -0.75 -31.55 4.13 -322.79 -1.33 -32.89 16 21 C -0.22 -11.38 10.41 84.03 0.87 -10.51 16 22 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 23 C -0.06 -3.55 5.50 84.86 0.47 -3.08 16 24 N -0.98 -61.48 13.97 21.65 0.30 -61.18 16 25 Si 0.94 44.40 27.73 68.60 1.90 46.31 16 26 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 27 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 28 H -0.25 -10.64 6.52 99.48 0.65 -9.99 16 29 H 0.07 1.20 6.70 -2.38 -0.02 1.19 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.57 7.22 -2.39 -0.02 1.55 16 33 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.10 2.07 5.74 -2.39 -0.01 2.06 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.23 3.20 6.32 -2.91 -0.02 3.18 16 37 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.11 1.74 6.97 -2.39 -0.02 1.73 16 39 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.11 0.83 8.14 -2.39 -0.02 0.82 16 42 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.11 1.87 4.10 -2.39 -0.01 1.86 16 44 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.36 15.21 5.38 -92.71 -0.50 14.71 16 47 H 0.25 15.34 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -70.32 369.73 3.81 -66.51 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.43 Total: 26.12 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 6.39 Total: 0.85 kcal Atomic # 7 Polarization: -120.23 SS G_CDS: -4.85 Total: -125.07 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.06 Total: -14.72 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.90 Total: 46.31 kcal Total: -70.32 3.81 -66.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037847470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.797 kcal (2) G-P(sol) polarization free energy of solvation -70.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds