Wall clock time and date at job start Fri Apr 10 2020 18:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47332 * 2 1 4 4 H 1.08999 * 109.52203 * 54.91678 * 3 2 1 5 5 C 1.53195 * 109.49597 * 294.84107 * 3 2 1 6 6 N 1.46960 * 108.88893 * 185.48855 * 5 3 2 7 7 C 1.34775 * 120.65644 * 233.53112 * 6 5 3 8 8 O 1.21602 * 119.99704 * 354.03239 * 7 6 5 9 9 C 1.47516 * 120.00103 * 174.02199 * 7 6 5 10 10 C 1.36595 * 125.76866 * 173.24442 * 9 7 6 11 11 N 1.34818 * 106.84024 * 179.97438 * 10 9 7 12 12 C 1.46500 * 126.59606 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47243 * 125.00068 * 12 11 10 14 14 N 1.40207 * 106.80734 * 359.97438 * 11 10 9 15 15 N 1.28758 * 108.36947 * 359.75005 * 14 11 10 16 16 C 1.46928 * 118.71512 * 53.35996 * 6 5 3 17 17 C 1.53197 * 108.88841 * 306.63731 * 16 6 5 18 18 C 1.53037 * 109.50068 * 175.00286 * 3 2 1 19 19 H 1.08997 * 109.46103 * 301.33261 * 18 3 2 20 20 N 1.46498 * 109.45938 * 61.29441 * 18 3 2 21 21 C 1.36939 * 119.99768 * 205.07003 * 20 18 3 22 22 H 1.08005 * 120.00172 * 359.97438 * 21 20 18 23 23 C 1.38808 * 120.00016 * 180.02562 * 21 20 18 24 24 N 1.31621 * 120.00287 * 180.02562 * 23 21 20 25 25 Si 1.86805 * 120.00021 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47247 * 90.00574 * 25 23 21 27 27 H 1.48501 * 109.46901 * 210.00402 * 25 23 21 28 28 H 1.48500 * 109.46903 * 330.00305 * 25 23 21 29 29 H 1.09005 * 109.47058 * 299.99716 * 1 2 3 30 30 H 1.08993 * 109.47456 * 60.00451 * 1 2 3 31 31 H 1.09007 * 109.46768 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47262 * 239.99527 * 2 1 3 33 33 H 1.09006 * 109.47440 * 119.99903 * 2 1 3 34 34 H 1.09005 * 109.58245 * 305.20050 * 5 3 2 35 35 H 1.09001 * 109.58502 * 65.47856 * 5 3 2 36 36 H 1.08002 * 126.58574 * 359.97438 * 10 9 7 37 37 H 1.09001 * 109.46972 * 244.99760 * 12 11 10 38 38 H 1.09000 * 109.46890 * 5.00070 * 12 11 10 39 39 H 1.09000 * 109.46882 * 59.99717 * 13 12 11 40 40 H 1.08994 * 109.47717 * 180.02562 * 13 12 11 41 41 H 1.09008 * 109.46832 * 300.00439 * 13 12 11 42 42 H 1.09001 * 109.58749 * 186.78569 * 16 6 5 43 43 H 1.08994 * 109.59219 * 66.49413 * 16 6 5 44 44 H 1.09000 * 109.50036 * 174.51541 * 17 16 6 45 45 H 1.09001 * 109.49881 * 294.61712 * 17 16 6 46 46 H 0.96998 * 120.00458 * 25.07349 * 20 18 3 47 47 H 0.97001 * 120.00427 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9827 0.8407 5 6 1.6385 2.1267 -1.3105 6 7 2.2455 3.4644 -1.3542 7 6 1.4868 4.5565 -1.5738 8 8 0.3080 4.4332 -1.8456 9 6 2.0864 5.9013 -1.4841 10 6 1.4669 7.0748 -1.8081 11 7 2.3575 8.0617 -1.5831 12 6 2.1419 9.4962 -1.7877 13 6 2.4470 10.2480 -0.4905 14 7 3.5294 7.4511 -1.1144 15 7 3.3321 6.1797 -1.0634 16 6 3.6952 3.5888 -1.1500 17 6 4.0736 2.8882 0.1587 18 6 3.5652 1.4450 0.1257 19 1 3.8546 0.9369 1.0455 20 7 4.1506 0.7475 -1.0219 21 6 5.3879 0.1706 -0.9141 22 1 5.9322 0.2301 0.0168 23 6 5.9428 -0.4899 -2.0015 24 7 7.1318 -1.0449 -1.8978 25 14 5.0016 -0.5924 -3.6119 26 1 5.3459 0.5757 -4.4617 27 1 5.3678 -1.8450 -4.3204 28 1 3.5429 -0.5893 -3.3336 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.9964 1.5376 -2.1549 35 1 0.5531 2.2137 -1.3596 36 1 0.4575 7.1902 -2.1743 37 1 2.8015 9.8536 -2.5785 38 1 1.1045 9.6705 -2.0733 39 1 3.4844 10.0735 -0.2050 40 1 2.2861 11.3152 -0.6426 41 1 1.7874 9.8904 0.3003 42 1 3.9669 4.6428 -1.0920 43 1 4.2228 3.1206 -1.9809 44 1 5.1577 2.8894 0.2718 45 1 3.6192 3.4148 0.9980 46 1 3.6619 0.6943 -1.8581 47 1 7.5195 -1.5068 -2.6576 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037970920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:23 Heat of formation + Delta-G solvation = 85.385027 kcal Electronic energy + Delta-G solvation = -28301.459170 eV Core-core repulsion = 24522.371473 eV Total energy + Delta-G solvation = -3779.087697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.41392 -39.86296 -37.81643 -35.80684 -34.40651 -33.77894 -31.67732 -31.58881 -30.70961 -29.69524 -28.61260 -25.59652 -25.03800 -23.79557 -23.22457 -22.70289 -21.98275 -20.73926 -19.95885 -18.46926 -17.81524 -17.45860 -16.52317 -16.26741 -15.98194 -15.23080 -14.99926 -14.67695 -14.61464 -14.20501 -14.08385 -13.65663 -13.46374 -13.30457 -13.19087 -12.97545 -12.82282 -12.48800 -12.39061 -12.32497 -12.21739 -11.77253 -11.52182 -11.38439 -11.16919 -10.89571 -10.81251 -10.63258 -10.47324 -10.28862 -10.16832 -10.13165 -9.73360 -9.60740 -9.47254 -9.42680 -8.82822 -8.24236 -7.19251 -5.72079 -3.06284 0.96899 1.63133 1.78408 3.16374 3.33824 3.39642 3.42835 3.48454 3.94329 4.07259 4.32280 4.50764 4.58742 4.62981 4.77814 4.96988 4.99391 5.08667 5.18936 5.25270 5.34139 5.38240 5.47658 5.57453 5.59003 5.64023 5.73389 5.80771 5.84735 5.95042 6.04149 6.12578 6.13677 6.25847 6.33267 6.38460 6.52135 6.56836 6.72753 6.75213 6.80043 6.89594 7.06226 7.61497 7.85873 8.05371 8.28714 8.47306 9.26120 9.98909 10.19246 11.46606 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.014444 B = 0.003826 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.997654 B = 7316.810815 C = 8264.250943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.072 0.928 5 C 0.118 3.882 6 N -0.585 5.585 7 C 0.599 3.401 8 O -0.554 6.554 9 C -0.091 4.091 10 C 0.089 3.911 11 N -0.361 5.361 12 C 0.118 3.882 13 C -0.168 4.168 14 N -0.065 5.065 15 N -0.197 5.197 16 C 0.076 3.924 17 C -0.142 4.142 18 C 0.183 3.817 19 H 0.058 0.942 20 N -0.743 5.743 21 C -0.235 4.235 22 H 0.091 0.909 23 C 0.005 3.995 24 N -0.935 5.935 25 Si 0.877 3.123 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.278 1.278 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.203 0.797 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.131 0.869 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.050 0.950 46 H 0.359 0.641 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.586 20.779 1.849 25.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.090 0.910 5 C -0.005 4.005 6 N -0.315 5.315 7 C 0.385 3.615 8 O -0.432 6.432 9 C -0.230 4.230 10 C -0.068 4.068 11 N -0.147 5.147 12 C -0.003 4.003 13 C -0.226 4.226 14 N -0.045 5.045 15 N -0.069 5.069 16 C -0.047 4.047 17 C -0.183 4.183 18 C 0.073 3.927 19 H 0.076 0.924 20 N -0.387 5.387 21 C -0.365 4.365 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.583 5.583 25 Si 0.708 3.292 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.204 1.204 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.220 0.780 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.147 0.853 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.069 0.931 46 H 0.193 0.807 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.542 20.908 2.261 25.013 hybrid contribution -1.408 -0.215 -1.664 2.190 sum -14.949 20.692 0.597 25.535 Atomic orbital electron populations 1.21860 0.96688 1.01123 1.01438 1.21437 0.94414 0.95738 1.03343 1.21794 0.97663 0.96083 0.97031 0.91007 1.21733 0.98925 0.81611 0.98187 1.47976 1.09487 1.05813 1.68190 1.16813 0.85198 0.82159 0.77342 1.90760 1.15515 1.86227 1.50745 1.21517 0.92552 0.95647 1.13269 1.23329 0.97574 0.87142 0.98738 1.50601 1.10852 1.08506 1.44786 1.22030 1.03900 0.73862 1.00495 1.22090 1.04085 1.00436 0.95985 1.82023 1.03777 1.00310 1.18365 1.74322 1.14263 1.06145 1.12192 1.22742 0.77627 1.05280 0.99025 1.22404 1.02124 0.97951 0.95841 1.20232 0.89280 0.91132 0.92050 0.92354 1.42830 1.19685 1.65749 1.10454 1.19069 0.91913 1.26395 0.99157 0.89161 1.24618 0.96475 1.00485 0.97458 1.69691 1.16356 1.41513 1.30784 0.86668 0.79648 0.77334 0.85568 1.21213 1.21837 1.20385 0.93152 0.92845 0.93090 0.91080 0.91512 0.91493 0.89285 0.77988 0.88329 0.87756 0.90596 0.89936 0.91694 0.85283 0.91017 0.90363 0.93148 0.80666 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.67 37.16 0.36 -1.64 16 2 C -0.11 -1.73 5.19 -26.73 -0.14 -1.87 16 3 C -0.11 -1.71 2.14 -90.50 -0.19 -1.90 16 4 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 5 C 0.12 1.97 5.01 -3.69 -0.02 1.95 16 6 N -0.58 -9.90 2.98 -173.97 -0.52 -10.41 16 7 C 0.60 9.79 7.68 -12.48 -0.10 9.69 16 8 O -0.55 -9.79 16.32 5.28 0.09 -9.70 16 9 C -0.09 -1.28 6.74 -83.56 -0.56 -1.84 16 10 C 0.09 0.90 11.28 -16.83 -0.19 0.71 16 11 N -0.36 -3.34 3.69 -61.06 -0.23 -3.56 16 12 C 0.12 0.52 7.26 -4.04 -0.03 0.49 16 13 C -0.17 -0.71 10.12 37.16 0.38 -0.34 16 14 N -0.07 -0.85 13.64 60.35 0.82 -0.03 16 15 N -0.20 -2.92 8.71 32.84 0.29 -2.63 16 16 C 0.08 1.34 6.05 -3.71 -0.02 1.31 16 17 C -0.14 -2.53 5.78 -26.61 -0.15 -2.68 16 18 C 0.18 3.46 2.53 -67.89 -0.17 3.28 16 19 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 20 N -0.74 -16.90 3.53 -53.39 -0.19 -17.09 16 21 C -0.24 -6.44 10.41 -15.06 -0.16 -6.60 16 22 H 0.09 2.66 8.06 -52.48 -0.42 2.23 16 23 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 24 N -0.94 -29.27 13.97 55.49 0.78 -28.50 16 25 Si 0.88 22.22 27.74 -169.99 -4.71 17.51 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 28 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.69 6.70 -51.93 -0.35 0.34 16 31 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.07 1.25 7.70 -51.93 -0.40 0.85 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.21 6.64 -51.93 -0.34 0.86 16 35 H 0.09 1.44 5.77 -51.93 -0.30 1.14 16 36 H 0.20 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.10 0.16 8.08 -51.93 -0.42 -0.26 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 41 H 0.06 0.33 8.14 -51.92 -0.42 -0.10 16 42 H 0.13 2.19 3.66 -121.62 -0.44 1.75 16 43 H 0.07 1.43 7.74 -51.93 -0.40 1.02 16 44 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.36 8.23 3.81 -40.82 -0.16 8.07 16 47 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 370.70 15.07 5.59 5.59 Total: -1.00 -33.97 370.70 -6.66 -40.63 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -7.48 Total: 7.59 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -1.09 Total: 0.61 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: 0.95 Total: -62.22 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.97 -6.66 -40.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037970920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.016 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds