Wall clock time and date at job start Fri Apr 10 2020 18:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47332 * 2 1 4 4 H 1.08999 * 109.52203 * 54.91678 * 3 2 1 5 5 C 1.53195 * 109.49597 * 294.84107 * 3 2 1 6 6 N 1.46960 * 108.88893 * 185.48855 * 5 3 2 7 7 C 1.34775 * 120.65644 * 233.53112 * 6 5 3 8 8 O 1.21602 * 119.99704 * 354.03239 * 7 6 5 9 9 C 1.47516 * 120.00103 * 174.02199 * 7 6 5 10 10 C 1.36595 * 125.76866 * 173.24442 * 9 7 6 11 11 N 1.34818 * 106.84024 * 179.97438 * 10 9 7 12 12 C 1.46500 * 126.59606 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47243 * 125.00068 * 12 11 10 14 14 N 1.40207 * 106.80734 * 359.97438 * 11 10 9 15 15 N 1.28758 * 108.36947 * 359.75005 * 14 11 10 16 16 C 1.46928 * 118.71512 * 53.35996 * 6 5 3 17 17 C 1.53197 * 108.88841 * 306.63731 * 16 6 5 18 18 C 1.53037 * 109.50068 * 175.00286 * 3 2 1 19 19 H 1.08997 * 109.46103 * 301.33261 * 18 3 2 20 20 N 1.46498 * 109.45938 * 61.29441 * 18 3 2 21 21 C 1.36939 * 119.99768 * 205.07003 * 20 18 3 22 22 H 1.08005 * 120.00172 * 359.97438 * 21 20 18 23 23 C 1.38808 * 120.00016 * 180.02562 * 21 20 18 24 24 N 1.31621 * 120.00287 * 180.02562 * 23 21 20 25 25 Si 1.86805 * 120.00021 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47247 * 90.00574 * 25 23 21 27 27 H 1.48501 * 109.46901 * 210.00402 * 25 23 21 28 28 H 1.48500 * 109.46903 * 330.00305 * 25 23 21 29 29 H 1.09005 * 109.47058 * 299.99716 * 1 2 3 30 30 H 1.08993 * 109.47456 * 60.00451 * 1 2 3 31 31 H 1.09007 * 109.46768 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47262 * 239.99527 * 2 1 3 33 33 H 1.09006 * 109.47440 * 119.99903 * 2 1 3 34 34 H 1.09005 * 109.58245 * 305.20050 * 5 3 2 35 35 H 1.09001 * 109.58502 * 65.47856 * 5 3 2 36 36 H 1.08002 * 126.58574 * 359.97438 * 10 9 7 37 37 H 1.09001 * 109.46972 * 244.99760 * 12 11 10 38 38 H 1.09000 * 109.46890 * 5.00070 * 12 11 10 39 39 H 1.09000 * 109.46882 * 59.99717 * 13 12 11 40 40 H 1.08994 * 109.47717 * 180.02562 * 13 12 11 41 41 H 1.09008 * 109.46832 * 300.00439 * 13 12 11 42 42 H 1.09001 * 109.58749 * 186.78569 * 16 6 5 43 43 H 1.08994 * 109.59219 * 66.49413 * 16 6 5 44 44 H 1.09000 * 109.50036 * 174.51541 * 17 16 6 45 45 H 1.09001 * 109.49881 * 294.61712 * 17 16 6 46 46 H 0.96998 * 120.00458 * 25.07349 * 20 18 3 47 47 H 0.97001 * 120.00427 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9827 0.8407 5 6 1.6385 2.1267 -1.3105 6 7 2.2455 3.4644 -1.3542 7 6 1.4868 4.5565 -1.5738 8 8 0.3080 4.4332 -1.8456 9 6 2.0864 5.9013 -1.4841 10 6 1.4669 7.0748 -1.8081 11 7 2.3575 8.0617 -1.5831 12 6 2.1419 9.4962 -1.7877 13 6 2.4470 10.2480 -0.4905 14 7 3.5294 7.4511 -1.1144 15 7 3.3321 6.1797 -1.0634 16 6 3.6952 3.5888 -1.1500 17 6 4.0736 2.8882 0.1587 18 6 3.5652 1.4450 0.1257 19 1 3.8546 0.9369 1.0455 20 7 4.1506 0.7475 -1.0219 21 6 5.3879 0.1706 -0.9141 22 1 5.9322 0.2301 0.0168 23 6 5.9428 -0.4899 -2.0015 24 7 7.1318 -1.0449 -1.8978 25 14 5.0016 -0.5924 -3.6119 26 1 5.3459 0.5757 -4.4617 27 1 5.3678 -1.8450 -4.3204 28 1 3.5429 -0.5893 -3.3336 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.9964 1.5376 -2.1549 35 1 0.5531 2.2137 -1.3596 36 1 0.4575 7.1902 -2.1743 37 1 2.8015 9.8536 -2.5785 38 1 1.1045 9.6705 -2.0733 39 1 3.4844 10.0735 -0.2050 40 1 2.2861 11.3152 -0.6426 41 1 1.7874 9.8904 0.3003 42 1 3.9669 4.6428 -1.0920 43 1 4.2228 3.1206 -1.9809 44 1 5.1577 2.8894 0.2718 45 1 3.6192 3.4148 0.9980 46 1 3.6619 0.6943 -1.8581 47 1 7.5195 -1.5068 -2.6576 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037970920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:22 Heat of formation + Delta-G solvation = 62.642451 kcal Electronic energy + Delta-G solvation = -28302.445362 eV Core-core repulsion = 24522.371473 eV Total energy + Delta-G solvation = -3780.073889 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.31797 -41.18923 -39.21014 -36.53264 -35.85942 -35.33357 -33.56343 -32.36158 -31.55371 -31.45747 -29.87923 -26.93325 -25.73999 -25.23225 -24.91104 -23.89840 -22.73415 -22.08785 -21.07927 -19.97603 -19.74362 -18.50142 -17.55939 -17.17412 -17.11826 -16.63038 -16.27152 -16.10253 -15.74194 -15.43803 -15.23072 -15.09035 -14.91309 -14.54245 -14.43410 -14.24196 -13.83726 -13.73761 -13.51154 -13.33938 -13.15563 -12.97322 -12.89254 -12.68008 -12.60340 -12.42072 -12.21854 -12.01250 -11.87046 -11.65911 -11.52259 -11.47956 -11.32538 -11.20926 -11.05153 -10.66226 -10.37599 -9.62524 -9.22017 -7.98011 -5.28431 0.16242 0.55812 1.13552 1.35435 1.37396 1.43984 1.94038 2.17960 2.49189 3.09577 3.34163 3.36833 3.62096 3.66557 3.82311 3.94843 3.97487 4.01147 4.05254 4.20045 4.29760 4.35329 4.38118 4.39745 4.45380 4.54286 4.62177 4.69469 4.76236 4.82985 4.90894 4.96864 5.06848 5.11754 5.15953 5.23753 5.25458 5.27778 5.35533 5.45172 5.49662 5.53993 5.69528 5.84307 6.26060 6.34275 6.82982 7.08832 7.12678 7.89597 8.08498 9.24093 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.014444 B = 0.003826 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.997654 B = 7316.810815 C = 8264.250943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.094 4.094 4 H 0.090 0.910 5 C 0.120 3.880 6 N -0.591 5.591 7 C 0.602 3.398 8 O -0.568 6.568 9 C -0.125 4.125 10 C 0.115 3.885 11 N -0.346 5.346 12 C 0.106 3.894 13 C -0.166 4.166 14 N -0.089 5.089 15 N -0.226 5.226 16 C 0.085 3.915 17 C -0.134 4.134 18 C 0.177 3.823 19 H 0.049 0.951 20 N -0.741 5.741 21 C -0.211 4.211 22 H 0.060 0.940 23 C -0.061 4.061 24 N -0.985 5.985 25 Si 0.939 3.061 26 H -0.285 1.285 27 H -0.297 1.297 28 H -0.254 1.254 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.100 0.900 36 H 0.241 0.759 37 H 0.113 0.887 38 H 0.145 0.855 39 H 0.053 0.947 40 H 0.109 0.891 41 H 0.056 0.944 42 H 0.142 0.858 43 H 0.043 0.957 44 H 0.057 0.943 45 H 0.070 0.930 46 H 0.362 0.638 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.928 23.384 1.345 29.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.114 4.114 4 H 0.108 0.892 5 C -0.002 4.002 6 N -0.321 5.321 7 C 0.389 3.611 8 O -0.448 6.448 9 C -0.264 4.264 10 C -0.043 4.043 11 N -0.131 5.131 12 C -0.012 4.012 13 C -0.223 4.223 14 N -0.068 5.068 15 N -0.098 5.098 16 C -0.038 4.038 17 C -0.175 4.175 18 C 0.069 3.931 19 H 0.068 0.932 20 N -0.385 5.385 21 C -0.342 4.342 22 H 0.078 0.922 23 C -0.252 4.252 24 N -0.636 5.636 25 Si 0.767 3.233 26 H -0.212 1.212 27 H -0.224 1.224 28 H -0.179 1.179 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.258 0.742 37 H 0.131 0.869 38 H 0.162 0.838 39 H 0.072 0.928 40 H 0.128 0.872 41 H 0.075 0.925 42 H 0.158 0.842 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.089 0.911 46 H 0.196 0.804 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.923 23.579 1.785 29.078 hybrid contribution -0.403 -0.826 -1.414 1.687 sum -17.326 22.753 0.371 28.601 Atomic orbital electron populations 1.21795 0.94244 1.02143 1.02186 1.21399 0.96533 0.94747 1.02059 1.21698 0.95070 0.96945 0.97654 0.89177 1.21692 0.99421 0.81566 0.97563 1.47971 1.09033 1.06254 1.68810 1.17054 0.84956 0.82711 0.76369 1.90738 1.15976 1.86640 1.51405 1.21446 0.93214 0.95735 1.16040 1.23842 0.98466 0.85821 0.96219 1.50966 1.09409 1.10119 1.42617 1.22602 1.06782 0.70909 1.00936 1.22083 1.02439 1.02124 0.95682 1.81933 1.05580 0.99800 1.19488 1.74149 1.15113 1.07266 1.13280 1.22584 0.78145 1.05656 0.97399 1.22271 1.00900 0.97313 0.97019 1.20440 0.91419 0.91117 0.90168 0.93246 1.42778 1.18216 1.65701 1.11775 1.19014 0.92936 1.24685 0.97607 0.92152 1.25297 0.97518 1.01331 1.01034 1.69858 1.18457 1.43600 1.31730 0.85648 0.79651 0.76739 0.81214 1.21226 1.22398 1.17890 0.91764 0.92664 0.92028 0.93402 0.91775 0.93088 0.88196 0.74238 0.86894 0.83755 0.92815 0.87203 0.92482 0.84208 0.93878 0.92416 0.91137 0.80432 0.93624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.67 71.98 0.70 -2.73 16 2 C -0.11 -3.25 5.19 30.59 0.16 -3.09 16 3 C -0.09 -2.92 2.14 -10.72 -0.02 -2.94 16 4 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 5 C 0.12 3.85 5.01 86.36 0.43 4.28 16 6 N -0.59 -19.44 2.98 -822.57 -2.45 -21.89 16 7 C 0.60 18.68 7.68 86.69 0.67 19.34 16 8 O -0.57 -18.76 16.32 -4.04 -0.07 -18.83 16 9 C -0.12 -3.29 6.74 40.81 0.28 -3.02 16 10 C 0.11 1.94 11.28 83.85 0.95 2.88 16 11 N -0.35 -5.38 3.69 -347.09 -1.28 -6.67 16 12 C 0.11 0.52 7.26 86.38 0.63 1.15 16 13 C -0.17 -0.95 10.12 71.98 0.73 -0.22 16 14 N -0.09 -2.20 13.64 37.02 0.51 -1.69 16 15 N -0.23 -6.54 8.71 -50.00 -0.44 -6.97 16 16 C 0.09 3.02 6.05 86.36 0.52 3.54 16 17 C -0.13 -4.82 5.78 30.67 0.18 -4.64 16 18 C 0.18 6.70 2.53 45.02 0.11 6.82 16 19 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 20 N -0.74 -34.13 3.53 -322.82 -1.14 -35.27 16 21 C -0.21 -11.92 10.41 84.03 0.87 -11.04 16 22 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 23 C -0.06 -3.61 5.50 84.86 0.47 -3.15 16 24 N -0.98 -63.86 13.97 21.65 0.30 -63.56 16 25 Si 0.94 46.77 27.74 68.60 1.90 48.67 16 26 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 27 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 28 H -0.25 -11.51 6.52 99.48 0.65 -10.86 16 29 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.05 1.28 6.70 -2.39 -0.02 1.26 16 31 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.05 1.65 7.70 -2.38 -0.02 1.63 16 33 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.05 1.80 6.64 -2.38 -0.02 1.78 16 35 H 0.10 3.02 5.77 -2.39 -0.01 3.00 16 36 H 0.24 2.05 8.06 -2.91 -0.02 2.02 16 37 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.14 -0.35 8.08 -2.39 -0.02 -0.37 16 39 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 41 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 42 H 0.14 4.79 3.66 -92.56 -0.34 4.45 16 43 H 0.04 1.75 7.74 -2.39 -0.02 1.73 16 44 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.36 16.51 3.81 -92.71 -0.35 16.16 16 47 H 0.25 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -76.60 370.70 4.24 -72.37 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 0.24 Total: 26.66 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 6.66 Total: 7.19 kcal Atomic # 7 Polarization: -131.55 SS G_CDS: -4.50 Total: -136.05 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.07 Total: -18.83 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.90 Total: 48.67 kcal Total: -76.60 4.24 -72.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037970920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.009 kcal (2) G-P(sol) polarization free energy of solvation -76.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds