Wall clock time and date at job start Fri Apr 10 2020 18:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46956 * 2 1 4 4 H 1.08997 * 109.49623 * 305.06366 * 3 2 1 5 5 C 1.53198 * 109.52204 * 65.14511 * 3 2 1 6 6 N 1.46922 * 108.77210 * 174.60257 * 5 3 2 7 7 C 1.34780 * 120.63170 * 126.41750 * 6 5 3 8 8 O 1.21590 * 119.99708 * 352.68988 * 7 6 5 9 9 C 1.47518 * 120.00160 * 172.69095 * 7 6 5 10 10 C 1.36597 * 125.77198 * 172.66451 * 9 7 6 11 11 N 1.34819 * 106.83940 * 179.89712 * 10 9 7 12 12 C 1.46503 * 126.59063 * 180.12994 * 11 10 9 13 13 C 1.53000 * 109.46895 * 125.29694 * 12 11 10 14 14 N 1.40205 * 106.80987 * 0.35832 * 11 10 9 15 15 N 1.28761 * 108.36798 * 359.76809 * 14 11 10 16 16 C 1.46929 * 118.74084 * 306.38885 * 6 5 3 17 17 C 1.53192 * 108.77318 * 53.61023 * 16 6 5 18 18 C 1.53038 * 109.49651 * 184.99712 * 3 2 1 19 19 H 1.09000 * 109.45897 * 58.64789 * 18 3 2 20 20 N 1.46498 * 109.46417 * 298.67396 * 18 3 2 21 21 C 1.36931 * 120.00278 * 155.00087 * 20 18 3 22 22 H 1.08001 * 120.00231 * 359.97438 * 21 20 18 23 23 C 1.38809 * 120.00127 * 180.02562 * 21 20 18 24 24 N 1.31618 * 120.00356 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00105 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.46863 * 90.00386 * 25 23 21 27 27 H 1.48500 * 109.46935 * 330.00858 * 25 23 21 28 28 H 1.48498 * 109.47345 * 209.99993 * 25 23 21 29 29 H 1.08993 * 109.47128 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47514 * 300.00135 * 1 2 3 31 31 H 1.09002 * 109.46991 * 59.99692 * 1 2 3 32 32 H 1.09000 * 109.47067 * 240.00449 * 2 1 3 33 33 H 1.08994 * 109.47005 * 119.99649 * 2 1 3 34 34 H 1.09001 * 109.58706 * 294.38836 * 5 3 2 35 35 H 1.08999 * 109.58382 * 54.67072 * 5 3 2 36 36 H 1.07998 * 126.57547 * 0.03867 * 10 9 7 37 37 H 1.08997 * 109.47172 * 245.29287 * 12 11 10 38 38 H 1.09003 * 109.47064 * 5.29903 * 12 11 10 39 39 H 1.08997 * 109.47322 * 59.99553 * 13 12 11 40 40 H 1.08993 * 109.47437 * 179.97438 * 13 12 11 41 41 H 1.09006 * 109.47159 * 299.99666 * 13 12 11 42 42 H 1.08999 * 109.59071 * 173.40288 * 16 6 5 43 43 H 1.08997 * 109.58508 * 293.68531 * 16 6 5 44 44 H 1.09007 * 109.49695 * 185.41331 * 17 16 6 45 45 H 1.08998 * 109.49603 * 65.31946 * 17 16 6 46 46 H 0.97003 * 119.99932 * 335.00071 * 20 18 3 47 47 H 0.97005 * 120.00653 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6047 1.9823 -0.8410 5 6 1.6384 2.1275 1.3102 6 7 2.2449 3.4652 1.3496 7 6 1.4855 4.5573 1.5665 8 8 0.2741 4.4587 1.5993 9 6 2.1241 5.8724 1.7640 10 6 1.4742 7.0707 1.8508 11 7 2.4190 8.0152 2.0318 12 6 2.1966 9.4555 2.1820 13 6 2.8524 9.9405 3.4764 14 7 3.6557 7.3547 2.0434 15 7 3.4442 6.0947 1.8833 16 6 3.6950 3.5896 1.1487 17 6 4.0735 2.8882 -0.1596 18 6 3.5652 1.4451 -0.1257 19 1 3.8546 0.9367 -1.0454 20 7 4.1507 0.7483 1.0223 21 6 5.3886 0.1726 0.9152 22 1 5.9331 0.2319 -0.0156 23 6 5.9431 -0.4881 2.0027 24 7 7.1331 -1.0410 1.9001 25 14 5.0011 -0.5914 3.6125 26 1 4.1585 -1.8142 3.6153 27 1 4.1355 0.6065 3.7572 28 1 5.9604 -0.6488 4.7447 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5531 2.2168 1.3581 35 1 1.9942 1.5376 2.1548 36 1 0.4079 7.2304 1.7889 37 1 2.6347 9.9812 1.3337 38 1 1.1257 9.6557 2.2201 39 1 3.9231 9.7402 3.4385 40 1 2.6873 11.0121 3.5880 41 1 2.4143 9.4148 4.3249 42 1 3.9668 4.6436 1.0902 43 1 4.2207 3.1224 1.9815 44 1 5.1577 2.8895 -0.2726 45 1 3.6191 3.4144 -0.9990 46 1 3.6616 0.6946 1.8582 47 1 7.5206 -1.5031 2.6599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037970922.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:27 Heat of formation + Delta-G solvation = 83.634177 kcal Electronic energy + Delta-G solvation = -28286.392251 eV Core-core repulsion = 24507.228632 eV Total energy + Delta-G solvation = -3779.163619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.39005 -39.87534 -37.81570 -35.78313 -34.41227 -33.78636 -31.69036 -31.57085 -30.68568 -29.71941 -28.61606 -25.59593 -25.00620 -23.80389 -23.21548 -22.70896 -21.95998 -20.74998 -19.93463 -18.51275 -17.82144 -17.40843 -16.51266 -16.30705 -15.97377 -15.17790 -14.93454 -14.84385 -14.42848 -14.32435 -14.03319 -13.64912 -13.43471 -13.28839 -13.19436 -13.01387 -12.80160 -12.46904 -12.38641 -12.35471 -12.16669 -11.74959 -11.53728 -11.37884 -11.17627 -10.89608 -10.80893 -10.65577 -10.48132 -10.30967 -10.19464 -10.14442 -9.71615 -9.67800 -9.48021 -9.40674 -8.84857 -8.24806 -7.19677 -5.72112 -3.06471 0.97935 1.65531 1.80140 3.16277 3.33810 3.40502 3.43363 3.49028 3.95266 4.09289 4.33385 4.51381 4.59236 4.63264 4.78712 4.98692 5.00924 5.08782 5.17791 5.26632 5.33312 5.40760 5.46887 5.58562 5.60360 5.63366 5.73164 5.77324 5.84173 5.93638 6.02985 6.12416 6.14373 6.25065 6.32150 6.36223 6.49247 6.55264 6.67757 6.73681 6.78267 6.87196 7.03115 7.61782 7.85365 8.04917 8.28643 8.47162 9.25879 9.98691 10.18882 11.46521 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.013540 B = 0.003954 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.388890 B = 7079.702250 C = 8260.536444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.072 0.928 5 C 0.117 3.883 6 N -0.586 5.586 7 C 0.600 3.400 8 O -0.554 6.554 9 C -0.093 4.093 10 C 0.088 3.912 11 N -0.362 5.362 12 C 0.118 3.882 13 C -0.168 4.168 14 N -0.066 5.066 15 N -0.196 5.196 16 C 0.091 3.909 17 C -0.148 4.148 18 C 0.184 3.816 19 H 0.059 0.941 20 N -0.743 5.743 21 C -0.236 4.236 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.935 5.935 25 Si 0.877 3.123 26 H -0.285 1.285 27 H -0.278 1.278 28 H -0.292 1.292 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.203 0.797 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.117 0.883 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.048 0.952 46 H 0.360 0.640 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.505 20.526 -1.246 25.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.091 0.909 5 C -0.005 4.005 6 N -0.316 5.316 7 C 0.386 3.614 8 O -0.432 6.432 9 C -0.232 4.232 10 C -0.068 4.068 11 N -0.148 5.148 12 C -0.002 4.002 13 C -0.226 4.226 14 N -0.046 5.046 15 N -0.069 5.069 16 C -0.032 4.032 17 C -0.189 4.189 18 C 0.074 3.926 19 H 0.077 0.923 20 N -0.387 5.387 21 C -0.366 4.366 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.583 5.583 25 Si 0.708 3.292 26 H -0.211 1.211 27 H -0.204 1.204 28 H -0.218 1.218 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.220 0.780 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.134 0.866 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.067 0.933 46 H 0.194 0.806 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.389 20.602 -1.162 24.598 hybrid contribution -1.464 -0.110 1.209 1.902 sum -14.853 20.492 0.047 25.309 Atomic orbital electron populations 1.21858 0.96649 1.01113 1.01490 1.21433 0.94445 0.95725 1.03308 1.21796 0.97550 0.96108 0.97111 0.90944 1.21736 0.99022 0.81541 0.98209 1.47957 1.09550 1.05842 1.68210 1.16806 0.85698 0.81966 0.76978 1.90753 1.13022 1.85490 1.53971 1.21517 0.89737 0.95607 1.16300 1.23326 0.97421 0.87857 0.98213 1.50617 1.06407 1.08947 1.48844 1.22021 1.03043 0.74177 1.01004 1.22089 1.02751 1.02070 0.95714 1.82027 1.01636 0.99049 1.21874 1.74587 1.14755 1.07603 1.10001 1.22483 0.77741 1.03909 0.99022 1.22492 1.02193 0.98383 0.95818 1.20212 0.89339 0.90944 0.92106 0.92306 1.42829 1.19736 1.65790 1.10321 1.19057 0.92171 1.26247 0.99151 0.89179 1.24615 0.96466 1.00448 0.97435 1.69690 1.16292 1.41478 1.30838 0.86668 0.79460 0.77769 0.85330 1.21125 1.20421 1.21840 0.93091 0.92844 0.93114 0.91484 0.91164 0.89201 0.91433 0.78016 0.88355 0.87784 0.90596 0.89940 0.91691 0.86615 0.90508 0.90277 0.93297 0.80639 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.67 37.16 0.36 -1.61 16 2 C -0.11 -1.70 5.19 -26.73 -0.14 -1.84 16 3 C -0.11 -1.70 2.13 -90.49 -0.19 -1.89 16 4 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 5 C 0.12 1.95 5.04 -3.71 -0.02 1.93 16 6 N -0.59 -9.94 2.97 -174.00 -0.52 -10.45 16 7 C 0.60 9.84 7.67 -12.48 -0.10 9.74 16 8 O -0.55 -9.77 16.30 5.29 0.09 -9.68 16 9 C -0.09 -1.32 6.69 -83.55 -0.56 -1.88 16 10 C 0.09 0.91 11.28 -16.83 -0.19 0.72 16 11 N -0.36 -3.42 3.69 -61.06 -0.23 -3.64 16 12 C 0.12 0.54 7.26 -4.04 -0.03 0.51 16 13 C -0.17 -0.77 10.12 37.16 0.38 -0.40 16 14 N -0.07 -0.88 13.65 60.35 0.82 -0.06 16 15 N -0.20 -3.00 8.79 32.84 0.29 -2.71 16 16 C 0.09 1.61 5.82 -3.71 -0.02 1.59 16 17 C -0.15 -2.61 5.78 -26.61 -0.15 -2.76 16 18 C 0.18 3.45 2.53 -67.89 -0.17 3.28 16 19 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 20 N -0.74 -16.83 3.53 -53.39 -0.19 -17.02 16 21 C -0.24 -6.45 10.41 -15.06 -0.16 -6.61 16 22 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 23 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 24 N -0.93 -29.23 13.97 55.49 0.78 -28.46 16 25 Si 0.88 22.23 27.74 -169.99 -4.71 17.51 16 26 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 28 H -0.29 -7.58 7.11 56.52 0.40 -7.17 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.68 6.70 -51.93 -0.35 0.33 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.21 7.70 -51.93 -0.40 0.81 16 34 H 0.09 1.45 5.72 -51.93 -0.30 1.15 16 35 H 0.07 1.21 6.65 -51.93 -0.35 0.87 16 36 H 0.20 1.38 8.06 -52.49 -0.42 0.95 16 37 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.10 0.18 8.08 -51.93 -0.42 -0.24 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.12 1.97 4.12 -77.88 -0.32 1.65 16 43 H 0.08 1.55 7.74 -51.93 -0.40 1.15 16 44 H 0.08 1.50 8.14 -51.92 -0.42 1.08 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.36 8.21 3.81 -40.82 -0.16 8.05 16 47 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 370.92 15.07 5.59 5.59 Total: -1.00 -33.99 370.92 -6.52 -40.52 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -7.35 Total: 7.56 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.09 Total: 0.84 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: 0.96 Total: -62.34 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.99 -6.52 -40.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037970922.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.150 kcal (2) G-P(sol) polarization free energy of solvation -33.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds