Wall clock time and date at job start Fri Apr 10 2020 18:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47094 * 2 1 4 4 H 1.08997 * 109.50167 * 304.93590 * 3 2 1 5 5 C 1.53191 * 109.49723 * 65.00266 * 3 2 1 6 6 N 1.46924 * 108.77823 * 174.58153 * 5 3 2 7 7 C 1.34784 * 120.62992 * 126.36358 * 6 5 3 8 8 O 1.21592 * 119.99999 * 352.87145 * 7 6 5 9 9 C 1.47521 * 120.00119 * 173.13552 * 7 6 5 10 10 C 1.36590 * 125.77165 * 172.29761 * 9 7 6 11 11 N 1.34814 * 106.84127 * 180.02562 * 10 9 7 12 12 C 1.46501 * 126.59651 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47202 * 124.99526 * 12 11 10 14 14 N 1.40206 * 106.80965 * 359.97438 * 11 10 9 15 15 N 1.28763 * 108.37202 * 359.72636 * 14 11 10 16 16 C 1.46925 * 118.74063 * 306.64838 * 6 5 3 17 17 C 1.52761 * 109.00909 * 53.30545 * 16 6 5 18 18 C 1.53038 * 109.38394 * 305.58828 * 17 16 6 19 19 H 1.08999 * 109.46021 * 301.22448 * 18 17 16 20 20 N 1.46497 * 109.46421 * 181.26212 * 18 17 16 21 21 C 1.36932 * 120.00279 * 84.92918 * 20 18 17 22 22 H 1.08002 * 119.99863 * 0.02562 * 21 20 18 23 23 C 1.38807 * 120.00329 * 180.02562 * 21 20 18 24 24 N 1.31617 * 120.00154 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00295 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46918 * 60.00157 * 25 23 21 27 27 H 1.48493 * 109.47228 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47056 * 300.00675 * 25 23 21 29 29 H 1.08999 * 109.46812 * 299.99453 * 1 2 3 30 30 H 1.09004 * 109.47428 * 59.99762 * 1 2 3 31 31 H 1.09004 * 109.47594 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46993 * 240.00122 * 2 1 3 33 33 H 1.08994 * 109.47208 * 120.00777 * 2 1 3 34 34 H 1.09008 * 109.58601 * 54.79938 * 5 3 2 35 35 H 1.09004 * 109.70576 * 294.44383 * 5 3 2 36 36 H 1.08000 * 126.58257 * 359.97438 * 10 9 7 37 37 H 1.09001 * 109.46781 * 244.99554 * 12 11 10 38 38 H 1.09001 * 109.47195 * 4.99311 * 12 11 10 39 39 H 1.09001 * 109.47275 * 299.99725 * 13 12 11 40 40 H 1.09002 * 109.46767 * 60.00068 * 13 12 11 41 41 H 1.09003 * 109.46840 * 180.02562 * 13 12 11 42 42 H 1.09003 * 109.58939 * 173.13792 * 16 6 5 43 43 H 1.08999 * 109.58419 * 293.56497 * 16 6 5 44 44 H 1.09003 * 109.56385 * 185.55637 * 17 16 6 45 45 H 1.09002 * 109.36262 * 65.49812 * 17 16 6 46 46 H 0.97008 * 119.99914 * 264.93491 * 20 18 17 47 47 H 0.97000 * 120.00438 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6351 2.1279 1.3088 6 7 2.2416 3.4655 1.3495 7 6 1.4815 4.5579 1.5630 8 8 0.2701 4.4589 1.5949 9 6 2.1192 5.8747 1.7521 10 6 1.4687 7.0734 1.8276 11 7 2.4129 8.0199 2.0012 12 6 2.1899 9.4615 2.1363 13 6 2.8363 9.9585 3.4309 14 7 3.6492 7.3591 2.0288 15 7 3.4381 6.0970 1.8854 16 6 3.6914 3.5903 1.1467 17 6 4.0741 2.8879 -0.1548 18 6 3.5656 1.4449 -0.1217 19 1 3.9989 0.9267 0.7337 20 7 3.9578 0.7607 -1.3564 21 6 5.1961 0.1849 -1.4564 22 1 5.8836 0.2348 -0.6249 23 6 5.5679 -0.4629 -2.6264 24 7 4.7304 -0.5232 -3.6399 25 14 7.2570 -1.2490 -2.7626 26 1 7.4045 -2.2899 -1.7139 27 1 7.4068 -1.8710 -4.1026 28 1 8.3025 -0.2104 -2.5797 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.9908 1.5396 2.1547 35 1 0.5497 2.2172 1.3565 36 1 0.4026 7.2325 1.7603 37 1 2.6346 9.9791 1.2862 38 1 1.1190 9.6625 2.1644 39 1 2.3917 9.4409 4.2810 40 1 3.9073 9.7575 3.4027 41 1 2.6700 11.0310 3.5316 42 1 3.9624 4.6443 1.0848 43 1 4.2182 3.1236 1.9791 44 1 5.1585 2.8891 -0.2650 45 1 3.6219 3.4138 -0.9957 46 1 3.3402 0.7157 -2.1031 47 1 4.9903 -0.9756 -4.4577 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037970924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:05 Heat of formation + Delta-G solvation = 54.883542 kcal Electronic energy + Delta-G solvation = -27722.282172 eV Core-core repulsion = 23941.871831 eV Total energy + Delta-G solvation = -3780.410340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.29151 -41.07965 -39.06202 -36.53881 -36.05658 -35.25719 -33.45545 -32.34901 -31.54900 -31.08142 -29.81192 -26.91242 -25.70869 -25.25019 -24.71574 -23.54834 -22.68496 -22.15182 -21.25086 -20.46421 -19.07993 -18.49558 -17.57957 -17.22844 -17.07182 -16.71281 -16.13540 -15.83637 -15.65237 -15.46634 -15.33628 -14.96527 -14.72220 -14.55190 -14.45904 -14.02346 -13.77997 -13.59642 -13.44574 -13.31427 -13.07273 -12.89534 -12.80056 -12.74105 -12.50095 -12.35937 -12.21210 -12.13473 -11.83700 -11.71305 -11.51300 -11.49130 -11.29943 -11.11754 -11.07095 -10.69138 -10.35761 -9.63845 -8.93831 -7.89609 -5.16998 0.16896 0.58330 1.14480 1.48385 1.50922 1.56646 1.93582 2.20505 2.59019 3.10900 3.37714 3.43512 3.69552 3.80687 3.85467 3.96476 4.01284 4.03745 4.14031 4.27552 4.30275 4.35732 4.36257 4.42778 4.49990 4.59234 4.67736 4.76550 4.81680 4.82446 4.89146 4.91897 5.03267 5.09178 5.15059 5.21322 5.27060 5.34170 5.39458 5.49964 5.52454 5.54189 5.59255 5.70282 6.31260 6.33735 6.83562 7.09455 7.38175 8.14155 8.38385 9.33755 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.015458 B = 0.003155 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.919537 B = 8872.282084 C =10286.306340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.092 4.092 4 H 0.052 0.948 5 C 0.125 3.875 6 N -0.594 5.594 7 C 0.601 3.399 8 O -0.568 6.568 9 C -0.126 4.126 10 C 0.112 3.888 11 N -0.347 5.347 12 C 0.106 3.894 13 C -0.165 4.165 14 N -0.090 5.090 15 N -0.224 5.224 16 C 0.100 3.900 17 C -0.139 4.139 18 C 0.179 3.821 19 H 0.047 0.953 20 N -0.730 5.730 21 C -0.231 4.231 22 H 0.075 0.925 23 C -0.076 4.076 24 N -0.971 5.971 25 Si 0.968 3.032 26 H -0.278 1.278 27 H -0.299 1.299 28 H -0.280 1.280 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.239 0.761 37 H 0.112 0.888 38 H 0.143 0.857 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.109 0.891 42 H 0.125 0.875 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.038 0.962 46 H 0.371 0.629 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.902 21.177 15.671 28.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.112 4.112 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.324 5.324 7 C 0.389 3.611 8 O -0.448 6.448 9 C -0.265 4.265 10 C -0.046 4.046 11 N -0.132 5.132 12 C -0.013 4.013 13 C -0.223 4.223 14 N -0.069 5.069 15 N -0.097 5.097 16 C -0.024 4.024 17 C -0.180 4.180 18 C 0.071 3.929 19 H 0.065 0.935 20 N -0.369 5.369 21 C -0.363 4.363 22 H 0.093 0.907 23 C -0.268 4.268 24 N -0.622 5.622 25 Si 0.798 3.202 26 H -0.204 1.204 27 H -0.225 1.225 28 H -0.206 1.206 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.256 0.744 37 H 0.130 0.870 38 H 0.161 0.839 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.128 0.872 42 H 0.142 0.858 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.057 0.943 46 H 0.203 0.797 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.827 21.310 15.901 28.015 hybrid contribution 0.042 -0.803 -1.098 1.361 sum -8.786 20.507 14.802 26.774 Atomic orbital electron populations 1.21776 0.94591 1.01966 1.01867 1.21351 0.96282 0.94869 1.01958 1.21613 0.95474 0.96706 0.97369 0.92921 1.21753 0.99673 0.81217 0.97053 1.47986 1.09123 1.06443 1.68861 1.17058 0.85511 0.82494 0.76047 1.90744 1.13644 1.85876 1.54506 1.21444 0.90169 0.95810 1.19075 1.23844 0.98803 0.86603 0.95349 1.50952 1.05094 1.10400 1.46769 1.22590 1.05805 0.71242 1.01621 1.22079 1.01228 1.03681 0.95270 1.81911 1.03576 0.98581 1.22878 1.74431 1.15439 1.08716 1.11126 1.22349 0.78576 1.04679 0.96806 1.22385 1.00905 0.97946 0.96724 1.20419 0.92679 0.90849 0.88967 0.93526 1.42561 1.15487 1.64907 1.13897 1.19551 0.92642 1.25748 0.98363 0.90715 1.25478 1.01637 1.03234 0.96480 1.69813 1.37138 1.50145 1.05083 0.85287 0.80322 0.78401 0.76227 1.20438 1.22506 1.20638 0.91460 0.93550 0.92057 0.93508 0.91659 0.89879 0.88548 0.74445 0.86967 0.83894 0.92461 0.92734 0.87245 0.85802 0.90770 0.92024 0.94264 0.79740 0.94261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 9.67 71.98 0.70 -3.25 16 2 C -0.11 -3.55 5.31 30.59 0.16 -3.39 16 3 C -0.09 -3.16 1.93 -10.72 -0.02 -3.18 16 4 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 5 C 0.13 3.71 5.33 86.36 0.46 4.17 16 6 N -0.59 -18.19 2.98 -823.49 -2.45 -20.64 16 7 C 0.60 18.09 7.67 86.69 0.67 18.76 16 8 O -0.57 -18.63 16.30 -4.00 -0.07 -18.70 16 9 C -0.13 -3.21 6.68 40.81 0.27 -2.94 16 10 C 0.11 1.88 11.28 83.85 0.95 2.83 16 11 N -0.35 -5.31 3.69 -347.10 -1.28 -6.59 16 12 C 0.11 0.52 7.26 86.38 0.63 1.14 16 13 C -0.16 -0.88 10.12 71.98 0.73 -0.15 16 14 N -0.09 -2.14 13.64 37.02 0.51 -1.64 16 15 N -0.22 -6.17 8.81 -49.99 -0.44 -6.61 16 16 C 0.10 3.10 6.05 86.22 0.52 3.62 16 17 C -0.14 -5.21 5.64 30.53 0.17 -5.04 16 18 C 0.18 7.22 2.20 45.02 0.10 7.32 16 19 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 20 N -0.73 -37.01 4.33 -322.82 -1.40 -38.41 16 21 C -0.23 -12.85 9.93 84.03 0.83 -12.02 16 22 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 23 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 24 N -0.97 -60.22 13.06 21.65 0.28 -59.94 16 25 Si 0.97 46.86 29.55 68.60 2.03 48.88 16 26 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 27 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 28 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 29 H 0.07 1.61 6.70 -2.39 -0.02 1.59 16 30 H 0.05 1.30 8.14 -2.38 -0.02 1.29 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.91 7.22 -2.38 -0.02 1.90 16 33 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 35 H 0.10 2.81 5.72 -2.39 -0.01 2.79 16 36 H 0.24 2.10 8.06 -2.91 -0.02 2.07 16 37 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.14 -0.32 8.08 -2.39 -0.02 -0.34 16 39 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 42 H 0.12 3.86 4.14 -32.00 -0.13 3.73 16 43 H 0.07 2.16 8.14 -2.39 -0.02 2.15 16 44 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.37 20.52 7.51 -92.70 -0.70 19.83 16 47 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -74.20 377.61 3.96 -70.23 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: 0.16 Total: 29.50 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 6.63 Total: 3.90 kcal Atomic # 7 Polarization: -129.04 SS G_CDS: -4.79 Total: -133.82 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.07 Total: -18.70 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.88 kcal Total: -74.20 3.96 -70.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037970924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.115 kcal (2) G-P(sol) polarization free energy of solvation -74.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds