Wall clock time and date at job start Fri Apr 10 2020 18:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47039 * 2 1 4 4 H 1.09001 * 109.50498 * 55.06029 * 3 2 1 5 5 C 1.53191 * 109.49656 * 294.99324 * 3 2 1 6 6 N 1.46929 * 108.77987 * 185.41601 * 5 3 2 7 7 C 1.34770 * 120.63540 * 233.63527 * 6 5 3 8 8 O 1.21600 * 119.99865 * 353.56253 * 7 6 5 9 9 C 1.47522 * 120.00149 * 173.56601 * 7 6 5 10 10 C 1.36598 * 125.76837 * 173.36169 * 9 7 6 11 11 N 1.34810 * 106.83913 * 179.89797 * 10 9 7 12 12 C 1.46501 * 126.59769 * 180.10546 * 11 10 9 13 13 C 1.52996 * 109.47261 * 125.27154 * 12 11 10 14 14 N 1.40213 * 106.80932 * 0.35702 * 11 10 9 15 15 N 1.28762 * 108.36947 * 359.77240 * 14 11 10 16 16 C 1.46932 * 118.73468 * 53.60561 * 6 5 3 17 17 C 1.53190 * 108.77720 * 306.39670 * 16 6 5 18 18 C 1.53040 * 109.31355 * 54.63389 * 17 16 6 19 19 H 1.09003 * 109.45835 * 58.65851 * 18 17 16 20 20 N 1.46498 * 109.45711 * 178.61147 * 18 17 16 21 21 C 1.36940 * 120.00424 * 275.06966 * 20 18 17 22 22 H 1.07998 * 119.99849 * 359.97438 * 21 20 18 23 23 C 1.38813 * 120.00180 * 180.02562 * 21 20 18 24 24 N 1.31614 * 120.00039 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99897 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.47063 * 90.00170 * 25 23 21 27 27 H 1.48498 * 109.46970 * 209.99821 * 25 23 21 28 28 H 1.48501 * 109.47101 * 330.00132 * 25 23 21 29 29 H 1.08992 * 109.46980 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46518 * 60.00288 * 1 2 3 31 31 H 1.08998 * 109.47227 * 300.00492 * 1 2 3 32 32 H 1.09002 * 109.46518 * 119.99712 * 2 1 3 33 33 H 1.08998 * 109.47227 * 239.99507 * 2 1 3 34 34 H 1.09002 * 109.59085 * 305.20392 * 5 3 2 35 35 H 1.09000 * 109.58808 * 65.48443 * 5 3 2 36 36 H 1.08003 * 126.57876 * 0.02933 * 10 9 7 37 37 H 1.09003 * 109.47124 * 245.27618 * 12 11 10 38 38 H 1.08998 * 109.46797 * 5.27341 * 12 11 10 39 39 H 1.08996 * 109.47174 * 180.02562 * 13 12 11 40 40 H 1.09003 * 109.47430 * 300.00276 * 13 12 11 41 41 H 1.08998 * 109.47062 * 60.00349 * 13 12 11 42 42 H 1.09008 * 109.58323 * 66.18310 * 16 6 5 43 43 H 1.09000 * 109.58566 * 186.60334 * 16 6 5 44 44 H 1.09003 * 109.49673 * 174.58741 * 17 16 6 45 45 H 1.09000 * 109.49522 * 294.65076 * 17 16 6 46 46 H 0.97001 * 119.99647 * 95.07411 * 20 18 17 47 47 H 0.97001 * 120.00005 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6066 1.9817 0.8423 5 6 1.6352 2.1279 -1.3088 6 7 2.2417 3.4655 -1.3495 7 6 1.4817 4.5579 -1.5631 8 8 0.3042 4.4346 -1.8404 9 6 2.0785 5.9031 -1.4607 10 6 1.4572 7.0782 -1.7754 11 7 2.3448 8.0649 -1.5386 12 6 2.1259 9.5009 -1.7288 13 6 2.4333 10.2407 -0.4254 14 7 3.5198 7.4519 -1.0808 15 7 3.3272 6.1792 -1.0474 16 6 3.6924 3.5897 -1.1523 17 6 4.0741 2.8879 0.1548 18 6 3.5656 1.4449 0.1217 19 1 3.9990 0.9266 -0.7337 20 7 3.9578 0.7608 1.3564 21 6 5.1962 0.1850 1.4565 22 1 5.8836 0.2347 0.6250 23 6 5.5676 -0.4636 2.6262 24 7 6.7576 -1.0175 2.7222 25 14 4.3783 -0.5503 4.0641 26 1 3.5449 -1.7736 3.9442 27 1 5.1425 -0.5948 5.3366 28 1 3.5020 0.6486 4.0547 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.9909 1.5396 -2.1547 35 1 0.5497 2.2149 -1.3552 36 1 0.4478 7.1947 -2.1415 37 1 2.7825 9.8671 -2.5181 38 1 1.0874 9.6760 -2.0098 39 1 2.2700 11.3091 -0.5668 40 1 1.7767 9.8745 0.3639 41 1 3.4718 10.0657 -0.1445 42 1 4.2159 3.1205 -1.9854 43 1 3.9643 4.6437 -1.0942 44 1 5.1586 2.8891 0.2650 45 1 3.6224 3.4142 0.9957 46 1 3.3402 0.7158 2.1030 47 1 7.0173 -1.4704 3.5398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037970926.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:09 Heat of formation + Delta-G solvation = 83.076286 kcal Electronic energy + Delta-G solvation = -27873.872165 eV Core-core repulsion = 24094.684354 eV Total energy + Delta-G solvation = -3779.187811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.47369 -39.87188 -37.77573 -35.85776 -34.70198 -33.81057 -31.69819 -31.63947 -30.78617 -29.76563 -28.70956 -25.55548 -25.06963 -23.84723 -23.27539 -22.22530 -21.84412 -20.72497 -20.10782 -19.34648 -17.75269 -17.38739 -16.60559 -16.33145 -16.06972 -15.27448 -15.02503 -14.79948 -14.57287 -14.28277 -14.04399 -13.70422 -13.40524 -13.29543 -13.24013 -12.85708 -12.79593 -12.64000 -12.46935 -12.37586 -12.24726 -11.82154 -11.68722 -11.34122 -11.18874 -10.93627 -10.74665 -10.67132 -10.49615 -10.35774 -10.21958 -10.17008 -9.78190 -9.60930 -9.51614 -9.48727 -8.82014 -8.41504 -7.18967 -5.71992 -3.06393 0.91377 1.56056 1.73246 3.05952 3.25610 3.41224 3.44797 3.49027 3.89870 4.00571 4.29337 4.43924 4.54881 4.63821 4.71304 4.93341 4.95938 5.05890 5.12286 5.21300 5.29344 5.33837 5.44563 5.55785 5.56576 5.62513 5.66386 5.70332 5.83638 5.91605 6.06428 6.07941 6.10025 6.19966 6.32664 6.37182 6.42679 6.48676 6.60151 6.72940 6.79475 6.94923 7.09964 7.49250 7.77929 8.05059 8.19207 8.47481 9.26287 9.99164 10.19666 11.46613 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.014775 B = 0.003406 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.587420 B = 8219.173331 C = 9372.984210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.068 0.932 5 C 0.121 3.879 6 N -0.588 5.588 7 C 0.601 3.399 8 O -0.551 6.551 9 C -0.093 4.093 10 C 0.090 3.910 11 N -0.361 5.361 12 C 0.118 3.882 13 C -0.169 4.169 14 N -0.064 5.064 15 N -0.198 5.198 16 C 0.070 3.930 17 C -0.144 4.144 18 C 0.186 3.814 19 H 0.056 0.944 20 N -0.746 5.746 21 C -0.237 4.237 22 H 0.090 0.910 23 C 0.004 3.996 24 N -0.935 5.935 25 Si 0.881 3.119 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.278 1.278 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.204 0.796 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.135 0.865 44 H 0.079 0.921 45 H 0.056 0.944 46 H 0.360 0.640 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.642 20.799 -11.524 27.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.087 0.913 5 C -0.002 4.002 6 N -0.318 5.318 7 C 0.387 3.613 8 O -0.429 6.429 9 C -0.232 4.232 10 C -0.067 4.067 11 N -0.147 5.147 12 C -0.003 4.003 13 C -0.227 4.227 14 N -0.043 5.043 15 N -0.070 5.070 16 C -0.054 4.054 17 C -0.185 4.185 18 C 0.077 3.923 19 H 0.074 0.926 20 N -0.387 5.387 21 C -0.367 4.367 22 H 0.108 0.892 23 C -0.191 4.191 24 N -0.584 5.584 25 Si 0.711 3.289 26 H -0.211 1.211 27 H -0.219 1.219 28 H -0.204 1.204 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.221 0.779 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.151 0.849 44 H 0.097 0.903 45 H 0.075 0.925 46 H 0.193 0.807 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.583 20.924 -11.230 26.875 hybrid contribution -1.616 -0.144 0.893 1.852 sum -14.200 20.780 -10.338 27.208 Atomic orbital electron populations 1.21860 0.96688 1.01143 1.01434 1.21461 0.94476 0.95727 1.03426 1.21827 0.97831 0.96155 0.96997 0.91307 1.21769 0.99307 0.81354 0.97764 1.47964 1.09202 1.05970 1.68666 1.16807 0.85172 0.82156 0.77152 1.90768 1.15564 1.86225 1.50351 1.21512 0.92534 0.95622 1.13505 1.23342 0.97639 0.87138 0.98580 1.50614 1.10889 1.08487 1.44685 1.22040 1.03884 0.73763 1.00585 1.22094 1.04137 1.00551 0.95888 1.82036 1.03594 1.00132 1.18560 1.74282 1.14425 1.06294 1.12047 1.22889 0.77999 1.06144 0.98352 1.22532 1.02419 0.97937 0.95599 1.20217 0.90532 0.91063 0.90505 0.92582 1.42785 1.16574 1.66348 1.13033 1.19068 0.90667 1.26560 1.00413 0.89187 1.24640 0.96427 1.00461 0.97618 1.69695 1.19292 1.41805 1.27570 0.86600 0.80986 0.77771 0.83500 1.21136 1.21888 1.20374 0.93068 0.92892 0.93117 0.90513 0.91874 0.91285 0.89095 0.77944 0.88308 0.87727 0.89895 0.91651 0.90571 0.91993 0.84867 0.90255 0.92523 0.80711 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.67 37.16 0.36 -1.65 16 2 C -0.11 -1.75 5.31 -26.73 -0.14 -1.89 16 3 C -0.11 -1.75 1.93 -90.50 -0.17 -1.93 16 4 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 5 C 0.12 1.77 5.30 -3.71 -0.02 1.75 16 6 N -0.59 -8.90 2.97 -173.99 -0.52 -9.42 16 7 C 0.60 9.06 7.68 -12.48 -0.10 8.97 16 8 O -0.55 -9.11 16.32 5.28 0.09 -9.02 16 9 C -0.09 -1.21 6.75 -83.55 -0.56 -1.78 16 10 C 0.09 0.84 11.28 -16.84 -0.19 0.65 16 11 N -0.36 -3.11 3.69 -61.06 -0.23 -3.33 16 12 C 0.12 0.46 7.26 -4.04 -0.03 0.43 16 13 C -0.17 -0.69 10.12 37.16 0.38 -0.32 16 14 N -0.06 -0.79 13.65 60.35 0.82 0.03 16 15 N -0.20 -2.77 8.70 32.85 0.29 -2.49 16 16 C 0.07 1.07 6.32 -3.71 -0.02 1.04 16 17 C -0.14 -2.59 5.66 -26.61 -0.15 -2.74 16 18 C 0.19 3.57 2.19 -67.89 -0.15 3.42 16 19 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 20 N -0.75 -17.40 4.14 -53.38 -0.22 -17.63 16 21 C -0.24 -6.60 10.41 -15.06 -0.16 -6.76 16 22 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 23 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 24 N -0.94 -29.48 13.97 55.49 0.78 -28.70 16 25 Si 0.88 22.35 27.74 -169.99 -4.71 17.64 16 26 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 28 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.64 6.69 -51.93 -0.35 0.29 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.38 7.22 -51.93 -0.37 1.00 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.33 5.77 -51.93 -0.30 1.03 16 36 H 0.20 1.20 8.06 -52.48 -0.42 0.78 16 37 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.10 0.11 8.08 -51.93 -0.42 -0.31 16 39 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 43 H 0.13 2.03 3.66 -121.58 -0.45 1.59 16 44 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.36 8.43 5.37 -40.82 -0.22 8.21 16 47 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 374.28 15.07 5.64 5.64 Total: -1.00 -34.59 374.28 -6.73 -41.32 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -7.61 Total: 6.75 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -1.05 Total: -0.80 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: 0.92 Total: -61.53 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.71 Total: 17.64 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.59 -6.73 -41.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037970926.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.400 kcal (2) G-P(sol) polarization free energy of solvation -34.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds