Wall clock time and date at job start Fri Apr 10 2020 18:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47039 * 2 1 4 4 H 1.09001 * 109.50498 * 55.06029 * 3 2 1 5 5 C 1.53191 * 109.49656 * 294.99324 * 3 2 1 6 6 N 1.46929 * 108.77987 * 185.41601 * 5 3 2 7 7 C 1.34770 * 120.63540 * 233.63527 * 6 5 3 8 8 O 1.21600 * 119.99865 * 353.56253 * 7 6 5 9 9 C 1.47522 * 120.00149 * 173.56601 * 7 6 5 10 10 C 1.36598 * 125.76837 * 173.36169 * 9 7 6 11 11 N 1.34810 * 106.83913 * 179.89797 * 10 9 7 12 12 C 1.46501 * 126.59769 * 180.10546 * 11 10 9 13 13 C 1.52996 * 109.47261 * 125.27154 * 12 11 10 14 14 N 1.40213 * 106.80932 * 0.35702 * 11 10 9 15 15 N 1.28762 * 108.36947 * 359.77240 * 14 11 10 16 16 C 1.46932 * 118.73468 * 53.60561 * 6 5 3 17 17 C 1.53190 * 108.77720 * 306.39670 * 16 6 5 18 18 C 1.53040 * 109.31355 * 54.63389 * 17 16 6 19 19 H 1.09003 * 109.45835 * 58.65851 * 18 17 16 20 20 N 1.46498 * 109.45711 * 178.61147 * 18 17 16 21 21 C 1.36940 * 120.00424 * 275.06966 * 20 18 17 22 22 H 1.07998 * 119.99849 * 359.97438 * 21 20 18 23 23 C 1.38813 * 120.00180 * 180.02562 * 21 20 18 24 24 N 1.31614 * 120.00039 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99897 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.47063 * 90.00170 * 25 23 21 27 27 H 1.48498 * 109.46970 * 209.99821 * 25 23 21 28 28 H 1.48501 * 109.47101 * 330.00132 * 25 23 21 29 29 H 1.08992 * 109.46980 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46518 * 60.00288 * 1 2 3 31 31 H 1.08998 * 109.47227 * 300.00492 * 1 2 3 32 32 H 1.09002 * 109.46518 * 119.99712 * 2 1 3 33 33 H 1.08998 * 109.47227 * 239.99507 * 2 1 3 34 34 H 1.09002 * 109.59085 * 305.20392 * 5 3 2 35 35 H 1.09000 * 109.58808 * 65.48443 * 5 3 2 36 36 H 1.08003 * 126.57876 * 0.02933 * 10 9 7 37 37 H 1.09003 * 109.47124 * 245.27618 * 12 11 10 38 38 H 1.08998 * 109.46797 * 5.27341 * 12 11 10 39 39 H 1.08996 * 109.47174 * 180.02562 * 13 12 11 40 40 H 1.09003 * 109.47430 * 300.00276 * 13 12 11 41 41 H 1.08998 * 109.47062 * 60.00349 * 13 12 11 42 42 H 1.09008 * 109.58323 * 66.18310 * 16 6 5 43 43 H 1.09000 * 109.58566 * 186.60334 * 16 6 5 44 44 H 1.09003 * 109.49673 * 174.58741 * 17 16 6 45 45 H 1.09000 * 109.49522 * 294.65076 * 17 16 6 46 46 H 0.97001 * 119.99647 * 95.07411 * 20 18 17 47 47 H 0.97001 * 120.00005 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6066 1.9817 0.8423 5 6 1.6352 2.1279 -1.3088 6 7 2.2417 3.4655 -1.3495 7 6 1.4817 4.5579 -1.5631 8 8 0.3042 4.4346 -1.8404 9 6 2.0785 5.9031 -1.4607 10 6 1.4572 7.0782 -1.7754 11 7 2.3448 8.0649 -1.5386 12 6 2.1259 9.5009 -1.7288 13 6 2.4333 10.2407 -0.4254 14 7 3.5198 7.4519 -1.0808 15 7 3.3272 6.1792 -1.0474 16 6 3.6924 3.5897 -1.1523 17 6 4.0741 2.8879 0.1548 18 6 3.5656 1.4449 0.1217 19 1 3.9990 0.9266 -0.7337 20 7 3.9578 0.7608 1.3564 21 6 5.1962 0.1850 1.4565 22 1 5.8836 0.2347 0.6250 23 6 5.5676 -0.4636 2.6262 24 7 6.7576 -1.0175 2.7222 25 14 4.3783 -0.5503 4.0641 26 1 3.5449 -1.7736 3.9442 27 1 5.1425 -0.5948 5.3366 28 1 3.5020 0.6486 4.0547 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.9909 1.5396 -2.1547 35 1 0.5497 2.2149 -1.3552 36 1 0.4478 7.1947 -2.1415 37 1 2.7825 9.8671 -2.5181 38 1 1.0874 9.6760 -2.0098 39 1 2.2700 11.3091 -0.5668 40 1 1.7767 9.8745 0.3639 41 1 3.4718 10.0657 -0.1445 42 1 4.2159 3.1205 -1.9854 43 1 3.9643 4.6437 -1.0942 44 1 5.1586 2.8891 0.2650 45 1 3.6224 3.4142 0.9957 46 1 3.3402 0.7158 2.1030 47 1 7.0173 -1.4704 3.5398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037970926.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:08 Heat of formation + Delta-G solvation = 59.540162 kcal Electronic energy + Delta-G solvation = -27874.892768 eV Core-core repulsion = 24094.684354 eV Total energy + Delta-G solvation = -3780.208414 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.31057 -41.09550 -39.12907 -36.58309 -36.13380 -35.28458 -33.61051 -32.36014 -31.63951 -31.42403 -29.89780 -26.96815 -25.74476 -25.15844 -24.64603 -23.45762 -22.69111 -22.15010 -21.37449 -20.60837 -19.48045 -18.52519 -17.58506 -17.15341 -17.12392 -16.71022 -16.23960 -16.02128 -15.74087 -15.44888 -15.14519 -15.10977 -14.70660 -14.58498 -14.47945 -14.08180 -13.95525 -13.79744 -13.54078 -13.34724 -13.16949 -12.95689 -12.89552 -12.78624 -12.53335 -12.38900 -12.20050 -12.10351 -11.83916 -11.67536 -11.54013 -11.49452 -11.32534 -11.12357 -11.11030 -10.71175 -10.37401 -9.64755 -9.24581 -7.99404 -5.31038 0.16918 0.56367 1.13960 1.37350 1.39470 1.46495 1.94806 2.18890 2.49525 3.09511 3.32223 3.37025 3.55480 3.67209 3.80872 3.95540 3.98400 4.00958 4.08849 4.22344 4.29863 4.31697 4.35748 4.40990 4.48105 4.55460 4.64276 4.74637 4.76008 4.80787 4.84755 4.90516 5.00504 5.07529 5.14880 5.22225 5.27632 5.32281 5.37674 5.49280 5.49987 5.54211 5.70177 5.81294 6.24945 6.32237 6.83466 7.09550 7.10665 7.87377 8.06754 9.22490 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.014775 B = 0.003406 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.587420 B = 8219.173331 C = 9372.984210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.096 4.096 4 H 0.061 0.939 5 C 0.125 3.875 6 N -0.593 5.593 7 C 0.603 3.397 8 O -0.566 6.566 9 C -0.125 4.125 10 C 0.114 3.886 11 N -0.346 5.346 12 C 0.107 3.893 13 C -0.167 4.167 14 N -0.090 5.090 15 N -0.227 5.227 16 C 0.081 3.919 17 C -0.134 4.134 18 C 0.182 3.818 19 H 0.047 0.953 20 N -0.746 5.746 21 C -0.218 4.218 22 H 0.059 0.941 23 C -0.063 4.063 24 N -0.985 5.985 25 Si 0.948 3.052 26 H -0.277 1.277 27 H -0.298 1.298 28 H -0.259 1.259 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.242 0.758 37 H 0.115 0.885 38 H 0.145 0.855 39 H 0.110 0.890 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.069 0.931 43 H 0.142 0.858 44 H 0.056 0.944 45 H 0.046 0.954 46 H 0.362 0.638 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.825 23.063 -12.572 31.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.116 4.116 4 H 0.080 0.920 5 C 0.003 3.997 6 N -0.323 5.323 7 C 0.390 3.610 8 O -0.446 6.446 9 C -0.265 4.265 10 C -0.044 4.044 11 N -0.131 5.131 12 C -0.011 4.011 13 C -0.225 4.225 14 N -0.069 5.069 15 N -0.099 5.099 16 C -0.043 4.043 17 C -0.175 4.175 18 C 0.074 3.926 19 H 0.066 0.934 20 N -0.388 5.388 21 C -0.349 4.349 22 H 0.077 0.923 23 C -0.254 4.254 24 N -0.636 5.636 25 Si 0.776 3.224 26 H -0.203 1.203 27 H -0.225 1.225 28 H -0.184 1.184 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.258 0.742 37 H 0.133 0.867 38 H 0.162 0.838 39 H 0.128 0.872 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.158 0.842 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.195 0.805 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.793 23.252 -12.309 30.685 hybrid contribution -0.629 -0.681 1.100 1.439 sum -16.423 22.571 -11.209 30.079 Atomic orbital electron populations 1.21798 0.94344 1.02160 1.02101 1.21420 0.96511 0.94694 1.02311 1.21687 0.95001 0.97023 0.97896 0.92004 1.21739 0.99722 0.81296 0.96943 1.47980 1.08922 1.06402 1.69027 1.17025 0.84913 0.82700 0.76349 1.90747 1.16042 1.86623 1.51172 1.21491 0.93114 0.95849 1.16034 1.23865 0.98515 0.85861 0.96153 1.50968 1.09505 1.10072 1.42605 1.22593 1.06795 0.70884 1.00860 1.22089 1.02371 1.02291 0.95718 1.81947 1.05464 0.99729 1.19793 1.74145 1.15346 1.07323 1.13061 1.22753 0.78535 1.06320 0.96693 1.22337 1.00757 0.97303 0.97066 1.20420 0.92935 0.90943 0.88322 0.93449 1.42775 1.15003 1.66463 1.14596 1.19008 0.91538 1.25213 0.99114 0.92304 1.25388 0.98247 1.01100 1.00699 1.69870 1.21648 1.43753 1.28354 0.85504 0.78870 0.78603 0.79374 1.20306 1.22546 1.18388 0.91933 0.91521 0.93115 0.93084 0.91547 0.90096 0.88293 0.74210 0.86657 0.83751 0.87175 0.92728 0.92864 0.91294 0.84199 0.92526 0.93530 0.80470 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.67 71.98 0.70 -2.80 16 2 C -0.11 -3.32 5.31 30.59 0.16 -3.16 16 3 C -0.10 -3.04 1.93 -10.72 -0.02 -3.06 16 4 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 5 C 0.13 3.47 5.30 86.36 0.46 3.93 16 6 N -0.59 -17.33 2.97 -822.64 -2.45 -19.78 16 7 C 0.60 17.22 7.68 86.69 0.67 17.88 16 8 O -0.57 -17.46 16.32 -4.03 -0.07 -17.53 16 9 C -0.13 -3.09 6.75 40.82 0.28 -2.81 16 10 C 0.11 1.78 11.28 83.85 0.95 2.73 16 11 N -0.35 -5.06 3.69 -347.10 -1.28 -6.34 16 12 C 0.11 0.45 7.26 86.38 0.63 1.08 16 13 C -0.17 -0.98 10.12 71.98 0.73 -0.25 16 14 N -0.09 -2.14 13.65 37.02 0.51 -1.64 16 15 N -0.23 -6.23 8.70 -50.00 -0.44 -6.67 16 16 C 0.08 2.47 6.32 86.36 0.55 3.02 16 17 C -0.13 -4.93 5.66 30.67 0.17 -4.76 16 18 C 0.18 7.03 2.19 45.02 0.10 7.13 16 19 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 20 N -0.75 -35.25 4.14 -322.81 -1.34 -36.59 16 21 C -0.22 -12.47 10.41 84.03 0.87 -11.60 16 22 H 0.06 3.69 8.06 -2.91 -0.02 3.66 16 23 C -0.06 -3.78 5.50 84.86 0.47 -3.32 16 24 N -0.98 -64.11 13.97 21.65 0.30 -63.81 16 25 Si 0.95 46.83 27.74 68.60 1.90 48.74 16 26 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 27 H -0.30 -14.98 7.11 99.48 0.71 -14.28 16 28 H -0.26 -11.82 6.52 99.48 0.65 -11.17 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.41 6.69 -2.39 -0.02 1.40 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.79 7.22 -2.39 -0.02 1.77 16 33 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.10 2.65 5.77 -2.39 -0.01 2.64 16 36 H 0.24 1.73 8.06 -2.91 -0.02 1.70 16 37 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.14 -0.45 8.08 -2.39 -0.02 -0.47 16 39 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 43 H 0.14 4.29 3.66 -92.51 -0.34 3.95 16 44 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.36 16.81 5.37 -92.71 -0.50 16.31 16 47 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -77.76 374.28 3.93 -73.82 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.09 Total: 25.78 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 6.70 Total: 4.02 kcal Atomic # 7 Polarization: -130.14 SS G_CDS: -4.69 Total: -134.83 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.07 Total: -17.53 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.90 Total: 48.74 kcal Total: -77.76 3.93 -73.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037970926.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.362 kcal (2) G-P(sol) polarization free energy of solvation -77.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds