Wall clock time and date at job start Fri Apr 10 2020 18:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47149 * 2 1 4 4 C 1.53002 * 109.46880 * 120.00390 * 2 1 3 5 5 C 1.53000 * 109.47209 * 64.99903 * 4 2 1 6 6 N 1.46503 * 109.46592 * 179.97438 * 5 4 2 7 7 C 1.34810 * 126.59330 * 125.00414 * 6 5 4 8 8 C 1.36594 * 106.83954 * 179.97438 * 7 6 5 9 9 C 1.47532 * 125.76931 * 179.97438 * 8 7 6 10 10 O 1.21592 * 120.00099 * 353.47054 * 9 8 7 11 11 N 1.34773 * 119.99431 * 173.47179 * 9 8 7 12 12 C 1.46499 * 120.00714 * 3.34014 * 11 9 8 13 13 C 1.46507 * 119.99449 * 183.34642 * 11 9 8 14 14 C 1.53953 * 113.73861 * 218.73976 * 13 11 9 15 15 N 1.47811 * 86.03274 * 222.08367 * 14 13 11 16 16 C 1.36945 * 134.45450 * 204.64250 * 15 14 13 17 17 H 1.07993 * 120.00025 * 174.49997 * 16 15 14 18 18 C 1.38809 * 119.99708 * 354.50965 * 16 15 14 19 19 N 1.31622 * 120.00311 * 5.00563 * 18 16 15 20 20 Si 1.86802 * 119.99857 * 185.01594 * 18 16 15 21 21 H 1.48497 * 109.47189 * 94.99149 * 20 18 16 22 22 H 1.48505 * 109.47042 * 214.99464 * 20 18 16 23 23 H 1.48503 * 109.46624 * 334.99035 * 20 18 16 24 24 C 1.47575 * 91.05424 * 24.54672 * 15 14 13 25 25 N 1.34399 * 108.46218 * 0.02562 * 8 7 6 26 26 N 1.28760 * 109.51746 * 359.97438 * 25 8 7 27 27 H 1.09001 * 109.47210 * 59.99776 * 1 2 3 28 28 H 1.09002 * 109.47240 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46923 * 300.00307 * 1 2 3 30 30 H 1.09006 * 109.46811 * 240.00134 * 2 1 3 31 31 H 1.09001 * 109.46736 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47563 * 299.99789 * 3 2 1 33 33 H 1.08998 * 109.46849 * 60.00457 * 3 2 1 34 34 H 1.09000 * 109.46956 * 304.99201 * 4 2 1 35 35 H 1.09000 * 109.46689 * 185.00094 * 4 2 1 36 36 H 1.08996 * 109.47118 * 60.00133 * 5 4 2 37 37 H 1.09000 * 109.46961 * 299.99528 * 5 4 2 38 38 H 1.08001 * 126.58004 * 359.96935 * 7 6 5 39 39 H 1.09005 * 109.46497 * 84.09350 * 12 11 9 40 40 H 1.08996 * 109.47677 * 204.09129 * 12 11 9 41 41 H 1.08998 * 109.46893 * 324.09582 * 12 11 9 42 42 H 1.08996 * 112.94461 * 350.32460 * 13 11 9 43 43 H 1.08992 * 113.76790 * 336.34425 * 14 13 11 44 44 H 1.08996 * 113.76833 * 107.74348 * 14 13 11 45 45 H 0.96997 * 120.00075 * 180.02562 * 19 18 16 46 46 H 1.08996 * 113.77701 * 221.14917 * 24 15 14 47 47 H 1.09012 * 113.76762 * 89.75508 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6352 -2.1956 1.1879 6 7 2.1240 -2.8863 2.3838 7 6 1.3874 -3.6057 3.2539 8 6 2.2450 -4.0670 4.2117 9 6 1.8755 -4.9029 5.3698 10 8 0.7053 -5.1403 5.5996 11 7 2.8350 -5.4034 6.1731 12 6 4.2395 -5.0579 5.9399 13 6 2.4735 -6.2931 7.2795 14 6 3.2978 -6.0581 8.5584 15 7 3.3594 -7.5310 8.6661 16 6 3.5361 -8.4104 9.7010 17 1 3.4536 -9.4730 9.5267 18 6 3.8210 -7.9359 10.9739 19 7 3.8242 -6.6407 11.2081 20 14 4.2002 -9.1356 12.3547 21 1 5.6707 -9.3049 12.4735 22 1 3.6577 -8.6075 13.6322 23 1 3.5733 -10.4483 12.0558 24 6 3.1518 -7.6733 7.2120 25 7 3.4823 -3.6298 3.9213 26 7 3.4480 -2.9264 2.8434 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4424 -0.0005 32 1 1.6768 1.9564 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 1.6054 -0.2618 2.1370 35 1 3.1263 -0.6444 1.2951 36 1 2.0698 -2.6550 0.3002 37 1 0.5488 -2.2724 1.1420 38 1 0.3232 -3.7832 3.2034 39 1 4.4632 -4.1042 6.4180 40 1 4.8792 -5.8339 6.3601 41 1 4.4209 -4.9785 4.8680 42 1 1.3985 -6.3403 7.4529 43 1 4.2654 -5.5901 8.3776 44 1 2.7363 -5.5808 9.3614 45 1 4.0237 -6.3092 12.0976 46 1 2.4740 -8.4832 6.9421 47 1 4.0765 -7.6807 6.6348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043856662.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:34 Heat of formation + Delta-G solvation = 120.951446 kcal Electronic energy + Delta-G solvation = -26640.999745 eV Core-core repulsion = 22863.454324 eV Total energy + Delta-G solvation = -3777.545421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.31781 -39.50190 -37.76198 -37.41938 -34.78661 -34.06729 -31.95916 -31.09350 -29.75027 -27.75041 -27.59339 -26.50703 -25.03747 -24.74824 -24.17697 -22.32289 -22.00904 -20.64415 -19.99916 -18.55733 -17.58485 -16.82133 -16.43253 -16.26021 -16.05945 -15.64959 -15.11708 -14.92494 -14.72765 -14.26444 -14.22064 -13.81638 -13.75789 -13.59105 -12.90064 -12.80499 -12.59122 -12.49107 -12.29122 -12.23887 -11.95116 -11.76605 -11.53934 -11.48007 -11.29083 -11.26201 -11.18307 -10.84869 -10.77582 -10.65837 -10.47248 -10.16123 -10.03631 -9.67644 -9.50888 -9.33673 -8.76313 -8.03457 -6.85861 -5.75995 -3.07987 1.03344 1.75575 1.83782 3.29719 3.42349 3.46743 3.47519 3.49212 3.88329 4.10828 4.18772 4.29930 4.41300 4.49147 4.59816 4.67193 4.70363 4.88300 5.03472 5.07394 5.13301 5.22688 5.26117 5.30135 5.37172 5.43383 5.51022 5.52428 5.61325 5.64466 5.73508 5.76615 5.78505 6.08009 6.10763 6.19622 6.24803 6.38662 6.52831 6.64281 6.88671 7.25137 7.38087 7.56391 7.78118 7.90370 7.98582 8.45286 9.05730 9.71855 10.60060 11.41641 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.040457 B = 0.002043 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.928202 B =13700.763141 C =13845.328544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.129 4.129 5 C 0.120 3.880 6 N -0.362 5.362 7 C 0.088 3.912 8 C -0.090 4.090 9 C 0.595 3.405 10 O -0.548 6.548 11 N -0.581 5.581 12 C 0.075 3.925 13 C 0.089 3.911 14 C 0.160 3.840 15 N -0.607 5.607 16 C -0.223 4.223 17 H 0.082 0.918 18 C -0.007 4.007 19 N -0.918 5.918 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.109 3.891 25 N -0.200 5.200 26 N -0.072 5.072 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.203 0.797 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.117 0.883 43 H 0.036 0.964 44 H 0.074 0.926 45 H 0.254 0.746 46 H 0.047 0.953 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.410 14.529 -25.811 30.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.168 4.168 5 C -0.001 4.001 6 N -0.147 5.147 7 C -0.068 4.068 8 C -0.229 4.229 9 C 0.381 3.619 10 O -0.426 6.426 11 N -0.311 5.311 12 C -0.069 4.069 13 C -0.015 4.015 14 C 0.034 3.966 15 N -0.333 5.333 16 C -0.350 4.350 17 H 0.100 0.900 18 C -0.204 4.204 19 N -0.565 5.565 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.205 1.205 24 C -0.018 4.018 25 N -0.074 5.074 26 N -0.052 5.052 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.219 0.781 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.135 0.865 43 H 0.053 0.947 44 H 0.092 0.908 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.534 14.767 -25.617 29.914 hybrid contribution -0.598 -0.802 0.835 1.303 sum -5.132 13.965 -24.782 28.905 Atomic orbital electron populations 1.21969 0.94935 1.01915 1.02399 1.21067 0.96032 0.96733 0.97395 1.21824 1.01301 0.95333 1.02079 1.21980 1.03164 0.92279 0.99343 1.22164 1.00601 0.93256 0.84035 1.50524 1.08044 1.35794 1.20356 1.23353 0.99895 0.93641 0.89953 1.21620 0.89622 1.09808 1.01882 1.16883 0.85347 0.78932 0.80765 1.90776 1.17851 1.61078 1.72846 1.47863 1.07265 1.46485 1.29533 1.22132 0.80905 1.00780 1.03059 1.24128 1.01602 0.89474 0.86258 1.22632 0.95702 0.86484 0.91831 1.45696 1.84816 1.02315 1.00505 1.18998 1.41536 0.88267 0.86205 0.90008 1.24829 1.01865 0.96143 0.97523 1.69837 1.54354 1.11179 1.21128 0.86092 0.78049 0.79952 0.81642 1.21619 1.21687 1.20509 1.22978 0.96680 0.94793 0.87380 1.74821 1.19939 1.05908 1.06691 1.81967 0.95682 1.19171 1.08362 0.92274 0.92506 0.92310 0.90647 0.92366 0.92367 0.92475 0.90845 0.89872 0.88476 0.87691 0.78053 0.92519 0.90795 0.89235 0.86518 0.94674 0.90770 0.93561 0.93483 0.94523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 8.95 37.16 0.33 -0.17 16 2 C -0.09 -0.34 2.92 -90.62 -0.26 -0.61 16 3 C -0.15 -0.61 9.19 37.16 0.34 -0.26 16 4 C -0.13 -0.66 4.89 -26.73 -0.13 -0.79 16 5 C 0.12 0.61 6.29 -4.04 -0.03 0.58 16 6 N -0.36 -3.40 3.69 -61.06 -0.23 -3.62 16 7 C 0.09 0.93 11.28 -16.84 -0.19 0.74 16 8 C -0.09 -1.29 6.69 -83.55 -0.56 -1.85 16 9 C 0.60 10.38 7.67 -12.47 -0.10 10.29 16 10 O -0.55 -10.75 16.34 5.28 0.09 -10.66 16 11 N -0.58 -10.49 3.09 -176.98 -0.55 -11.03 16 12 C 0.07 1.19 8.29 59.85 0.50 1.68 16 13 C 0.09 1.85 4.41 -70.14 -0.31 1.54 16 14 C 0.16 3.88 6.87 -2.84 -0.02 3.86 16 15 N -0.61 -15.99 3.70 -177.90 -0.66 -16.65 16 16 C -0.22 -6.36 10.70 -15.06 -0.16 -6.52 16 17 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 18 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 19 N -0.92 -27.63 11.48 55.49 0.64 -27.00 16 20 Si 0.91 22.41 29.56 -169.99 -5.02 17.38 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.11 2.35 8.43 -2.97 -0.03 2.32 16 25 N -0.20 -2.88 8.81 32.85 0.29 -2.59 16 26 N -0.07 -0.91 13.65 60.35 0.82 -0.09 16 27 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.06 0.14 6.56 -51.93 -0.34 -0.20 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.10 0.29 6.51 -51.93 -0.34 -0.05 16 38 H 0.20 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 1.22 6.13 -51.93 -0.32 0.90 16 41 H 0.09 1.33 5.31 -51.93 -0.28 1.06 16 42 H 0.12 2.58 7.20 -51.93 -0.37 2.20 16 43 H 0.04 0.85 6.70 -51.93 -0.35 0.51 16 44 H 0.07 2.00 7.31 -51.93 -0.38 1.62 16 45 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.04 0.76 6.93 -51.92 -0.36 0.40 16 LS Contribution 380.13 15.07 5.73 5.73 Total: -1.00 -34.40 380.13 -6.95 -41.35 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -7.35 Total: -3.35 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -0.71 Total: 10.53 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: 0.32 Total: -60.98 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.40 -6.95 -41.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043856662.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.303 kcal (2) G-P(sol) polarization free energy of solvation -34.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds