Wall clock time and date at job start Fri Apr 10 2020 18:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 110.99433 * 2 1 4 4 C 1.46902 * 111.00241 * 123.95153 * 2 1 3 5 5 C 1.52994 * 109.47439 * 170.00061 * 4 2 1 6 6 N 1.46491 * 109.47480 * 179.97438 * 5 4 2 7 7 C 1.34258 * 125.75446 * 124.99776 * 6 5 4 8 8 C 1.38044 * 107.41965 * 180.02562 * 7 6 5 9 9 C 1.47429 * 126.41765 * 179.97438 * 8 7 6 10 10 O 1.21597 * 120.00261 * 187.47149 * 9 8 7 11 11 N 1.34782 * 119.99733 * 7.46265 * 9 8 7 12 12 C 1.46493 * 120.00162 * 7.77916 * 11 9 8 13 13 C 1.46499 * 119.99661 * 187.77787 * 11 9 8 14 14 C 1.53496 * 114.20629 * 240.00204 * 13 11 9 15 15 N 1.47069 * 87.98546 * 220.15110 * 14 13 11 16 16 C 1.36934 * 136.05635 * 207.08872 * 15 14 13 17 17 H 1.07999 * 120.00518 * 353.10187 * 16 15 14 18 18 C 1.38813 * 120.00136 * 173.10204 * 16 15 14 19 19 N 1.31616 * 120.00171 * 177.30231 * 18 16 15 20 20 Si 1.86801 * 119.99800 * 357.31038 * 18 16 15 21 21 H 1.48500 * 109.46966 * 173.65482 * 20 18 16 22 22 H 1.48502 * 109.46664 * 293.65380 * 20 18 16 23 23 H 1.48497 * 109.47594 * 53.65069 * 20 18 16 24 24 C 1.47066 * 87.88773 * 27.34041 * 15 14 13 25 25 C 1.41294 * 107.17072 * 0.22557 * 8 7 6 26 26 N 1.30450 * 108.01860 * 359.61876 * 25 8 7 27 27 H 1.09000 * 109.47281 * 296.04435 * 1 2 3 28 28 H 1.08998 * 109.47186 * 56.04719 * 1 2 3 29 29 H 1.09008 * 109.46757 * 176.04542 * 1 2 3 30 30 H 1.09005 * 109.46949 * 183.95459 * 3 2 1 31 31 H 1.08998 * 109.47223 * 303.94861 * 3 2 1 32 32 H 1.09000 * 109.47581 * 63.95626 * 3 2 1 33 33 H 1.09011 * 109.46875 * 49.99975 * 4 2 1 34 34 H 1.09004 * 109.46931 * 290.00476 * 4 2 1 35 35 H 1.08997 * 109.46907 * 60.00002 * 5 4 2 36 36 H 1.09000 * 109.47063 * 300.00455 * 5 4 2 37 37 H 1.08008 * 126.29237 * 0.04891 * 7 6 5 38 38 H 1.09001 * 109.47531 * 275.39049 * 12 11 9 39 39 H 1.09002 * 109.47317 * 35.39314 * 12 11 9 40 40 H 1.08999 * 109.47383 * 155.38745 * 12 11 9 41 41 H 1.09004 * 113.28329 * 13.07317 * 13 11 9 42 42 H 1.08997 * 113.46844 * 105.37287 * 14 13 11 43 43 H 1.09000 * 113.46740 * 334.92897 * 14 13 11 44 44 H 0.97001 * 120.00041 * 5.06172 * 19 18 16 45 45 H 1.09001 * 113.46295 * 87.43576 * 24 15 14 46 46 H 1.08998 * 113.47098 * 217.87829 * 24 15 14 47 47 H 1.07996 * 125.98955 * 179.73721 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9956 -0.7659 1.1376 5 6 3.5045 -0.9553 0.9704 6 7 4.0296 -1.7185 2.1051 7 6 4.7407 -2.8545 2.0247 8 6 5.0386 -3.2477 3.3140 9 6 5.8053 -4.4433 3.7093 10 8 5.8850 -4.7541 4.8822 11 7 6.4176 -5.1920 2.7706 12 6 6.4668 -4.7289 1.3817 13 6 7.0339 -6.4688 3.1394 14 6 8.5415 -6.5438 2.8604 15 7 8.3355 -7.9265 2.4035 16 6 9.0921 -9.0659 2.3369 17 1 10.1445 -9.0301 2.5764 18 6 8.5063 -10.2671 1.9615 19 7 9.2437 -11.3511 1.8459 20 14 6.6714 -10.3449 1.6200 21 1 6.3225 -11.6887 1.0931 22 1 5.9229 -10.0969 2.8784 23 1 6.3101 -9.3109 0.6173 24 6 6.9614 -7.5453 2.0438 25 6 4.4662 -2.2929 4.1841 26 7 3.8742 -1.3869 3.4557 27 1 -0.3634 0.4512 0.9233 28 1 -0.3633 0.5739 -0.8524 29 1 -0.3633 -1.0253 -0.0709 30 1 3.0827 1.3433 -0.0709 31 1 1.5897 1.9163 -0.8525 32 1 1.7043 1.8724 0.9233 33 1 1.5090 -1.7407 1.1757 34 1 1.7975 -0.2247 2.0628 35 1 3.9909 0.0194 0.9323 36 1 3.7024 -1.4965 0.0452 37 1 5.0273 -3.3665 1.1179 38 1 5.5480 -5.0158 0.8702 39 1 6.5691 -3.6439 1.3638 40 1 7.3201 -5.1825 0.8774 41 1 6.7452 -6.8161 4.1315 42 1 9.1535 -6.4704 3.7593 43 1 8.8706 -5.8699 2.0694 44 1 10.1813 -11.3286 2.0935 45 1 6.8740 -7.1353 1.0376 46 1 6.2273 -8.3249 2.2471 47 1 4.5125 -2.3091 5.2629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044030477.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:38 Heat of formation + Delta-G solvation = 118.127647 kcal Electronic energy + Delta-G solvation = -26962.204766 eV Core-core repulsion = 23184.536896 eV Total energy + Delta-G solvation = -3777.667870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.53321 -41.10953 -39.35290 -38.59664 -36.13951 -34.57067 -34.42092 -31.71078 -30.21870 -29.46068 -28.52137 -28.16675 -27.06598 -25.76426 -25.00936 -23.08391 -22.62759 -21.79932 -21.08404 -20.33851 -19.57129 -18.19891 -17.94145 -17.40994 -17.04597 -16.93145 -16.57133 -16.19828 -15.95707 -15.72257 -15.39948 -15.19794 -15.03058 -14.76793 -14.48630 -14.02423 -13.93891 -13.70641 -13.52764 -13.37423 -13.27708 -13.16745 -12.99077 -12.68672 -12.68255 -12.54441 -12.37503 -12.25208 -12.20342 -11.74963 -11.34473 -11.16048 -11.00404 -10.89683 -10.56355 -9.79249 -9.50193 -9.45294 -9.23890 -8.64906 -5.51019 0.51751 1.13402 1.33252 1.39227 1.51100 1.70347 1.97701 2.41041 2.54250 2.92547 2.99188 3.23172 3.41016 3.57037 3.77007 3.78137 3.86575 4.00783 4.12379 4.22839 4.23282 4.28380 4.33363 4.44136 4.46352 4.50627 4.56575 4.57072 4.60562 4.64111 4.67591 4.72726 4.76771 4.84404 4.92658 5.00251 5.04138 5.07225 5.15855 5.39902 5.61275 5.79060 5.91461 5.92853 5.99436 6.42298 6.57142 6.67601 7.23110 7.29045 8.21666 8.88794 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.020649 B = 0.002522 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.647655 B =11100.100731 C =11790.241441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.548 5.548 3 C 0.015 3.985 4 C 0.048 3.952 5 C 0.129 3.871 6 N -0.354 5.354 7 C 0.113 3.887 8 C -0.308 4.308 9 C 0.591 3.409 10 O -0.593 6.593 11 N -0.596 5.596 12 C 0.049 3.951 13 C 0.125 3.875 14 C 0.112 3.888 15 N -0.655 5.655 16 C -0.289 4.289 17 H 0.050 0.950 18 C -0.084 4.084 19 N -0.969 5.969 20 Si 1.111 2.889 21 H -0.305 1.305 22 H -0.283 1.283 23 H -0.246 1.246 24 C 0.094 3.906 25 C 0.097 3.903 26 N -0.321 5.321 27 H 0.023 0.977 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.022 0.978 33 H 0.076 0.924 34 H 0.033 0.967 35 H 0.099 0.901 36 H 0.139 0.861 37 H 0.237 0.763 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.038 0.962 43 H 0.070 0.930 44 H 0.246 0.754 45 H 0.082 0.918 46 H 0.043 0.957 47 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.259 29.556 -8.488 35.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.272 5.272 3 C -0.133 4.133 4 C -0.081 4.081 5 C 0.009 3.991 6 N -0.132 5.132 7 C -0.038 4.038 8 C -0.323 4.323 9 C 0.382 3.618 10 O -0.474 6.474 11 N -0.328 5.328 12 C -0.092 4.092 13 C 0.019 3.981 14 C -0.014 4.014 15 N -0.384 5.384 16 C -0.417 4.417 17 H 0.068 0.932 18 C -0.275 4.275 19 N -0.614 5.614 20 Si 0.937 3.063 21 H -0.233 1.233 22 H -0.211 1.211 23 H -0.170 1.170 24 C -0.031 4.031 25 C -0.090 4.090 26 N -0.141 5.141 27 H 0.042 0.958 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.041 0.959 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.117 0.883 36 H 0.157 0.843 37 H 0.253 0.747 38 H 0.110 0.890 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.119 0.881 42 H 0.057 0.943 43 H 0.088 0.912 44 H 0.055 0.945 45 H 0.100 0.900 46 H 0.060 0.940 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -19.854 29.199 -8.974 36.432 hybrid contribution 2.202 0.077 1.877 2.895 sum -17.652 29.275 -7.097 34.914 Atomic orbital electron populations 1.22440 0.86040 1.02940 1.01086 1.61977 1.09055 1.14714 1.41488 1.22578 1.01621 0.88042 1.01080 1.22224 0.94283 0.99265 0.92284 1.22088 0.94018 0.97940 0.85050 1.48783 1.39638 1.19058 1.05766 1.24631 0.91584 0.87434 1.00176 1.20168 1.16015 1.02183 0.93975 1.17729 0.77593 0.82067 0.84395 1.90739 1.64328 1.72676 1.19686 1.47591 1.55171 1.19684 1.10310 1.22692 1.04372 1.01794 0.80378 1.22857 0.93190 0.83166 0.98859 1.22952 0.95361 0.85412 0.97688 1.45740 1.12162 1.06559 1.73902 1.19965 0.91703 0.85819 1.44173 0.93233 1.27122 1.10264 0.90551 0.99604 1.71029 1.08204 1.30048 1.52102 0.83261 0.70347 0.75138 0.77565 1.23315 1.21089 1.17017 1.23408 0.87040 0.94619 0.98057 1.24113 0.93548 0.90469 1.00884 1.77157 1.25188 1.24270 0.87476 0.95829 0.89850 0.90983 0.90130 0.90037 0.95901 0.90560 0.94831 0.88270 0.84302 0.74717 0.89044 0.87877 0.89913 0.88133 0.94309 0.91228 0.94477 0.90034 0.93968 0.79149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.57 127.69 1.22 1.40 16 2 N -0.55 -4.86 5.02 -948.82 -4.76 -9.63 16 3 C 0.01 0.10 9.32 127.69 1.19 1.29 16 4 C 0.05 0.50 5.13 86.30 0.44 0.94 16 5 C 0.13 1.02 6.41 86.38 0.55 1.57 16 6 N -0.35 -5.12 3.65 -346.32 -1.26 -6.38 16 7 C 0.11 1.58 9.34 84.28 0.79 2.37 16 8 C -0.31 -6.94 5.94 -20.15 -0.12 -7.06 16 9 C 0.59 17.57 7.65 86.66 0.66 18.24 16 10 O -0.59 -23.10 16.49 -4.02 -0.07 -23.16 16 11 N -0.60 -15.97 3.11 -825.27 -2.57 -18.54 16 12 C 0.05 0.75 7.45 127.77 0.95 1.70 16 13 C 0.12 4.42 4.54 45.55 0.21 4.63 16 14 C 0.11 4.35 8.23 83.18 0.68 5.03 16 15 N -0.65 -31.62 3.67 -737.91 -2.71 -34.33 16 16 C -0.29 -16.99 11.09 84.03 0.93 -16.06 16 17 H 0.05 3.16 8.05 -2.91 -0.02 3.13 16 18 C -0.08 -5.04 5.50 84.86 0.47 -4.57 16 19 N -0.97 -63.06 13.70 21.65 0.30 -62.77 16 20 Si 1.11 53.28 25.01 68.60 1.72 54.99 16 21 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 22 H -0.28 -13.07 6.89 99.48 0.69 -12.39 16 23 H -0.25 -9.95 6.22 99.48 0.62 -9.33 16 24 C 0.09 3.62 5.36 83.28 0.45 4.07 16 25 C 0.10 2.23 11.84 85.65 1.01 3.25 16 26 N -0.32 -6.72 12.33 -56.27 -0.69 -7.42 16 27 H 0.02 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.08 0.48 8.12 -2.39 -0.02 0.46 16 29 H 0.07 0.55 8.12 -2.38 -0.02 0.53 16 30 H 0.08 0.38 6.47 -2.38 -0.02 0.36 16 31 H 0.08 0.40 8.12 -2.39 -0.02 0.38 16 32 H 0.02 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.08 0.89 8.06 -2.38 -0.02 0.87 16 34 H 0.03 0.48 8.12 -2.38 -0.02 0.46 16 35 H 0.10 0.65 6.55 -2.39 -0.02 0.63 16 36 H 0.14 0.33 8.06 -2.39 -0.02 0.31 16 37 H 0.24 1.33 4.48 -2.91 -0.01 1.32 16 38 H 0.09 0.89 7.24 -2.39 -0.02 0.87 16 39 H 0.10 1.01 5.51 -2.39 -0.01 1.00 16 40 H 0.08 1.38 5.96 -2.39 -0.01 1.37 16 41 H 0.10 4.10 7.36 -2.38 -0.02 4.08 16 42 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.07 2.32 7.04 -2.39 -0.02 2.30 16 44 H 0.25 16.11 8.73 -92.71 -0.81 15.31 16 45 H 0.08 2.65 6.43 -2.39 -0.02 2.63 16 46 H 0.04 1.73 3.94 -2.39 -0.01 1.72 16 47 H 0.19 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -82.84 369.42 0.22 -82.62 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 0.83 Total: 7.81 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 9.44 Total: 16.80 kcal Atomic # 7 Polarization: -127.36 SS G_CDS: -11.70 Total: -139.06 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.07 Total: -23.16 kcal Atomic # 14 Polarization: 53.28 SS G_CDS: 1.72 Total: 54.99 kcal Total: -82.84 0.22 -82.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044030477.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.751 kcal (2) G-P(sol) polarization free energy of solvation -82.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds